PDB Chemical Component GNX

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GNX

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N2	S1	1.600	1.656
N2	C2	1.450	1.465
C1	O1	1.410	1.428
C1	C2	1.524	1.531
C1	O5	1.410	1.429
S1	O1S	1.460	1.421
S1	O2S	1.460	1.421
S1	O3S	1.461	1.522
C2	C3	1.524	1.532
C3	O3	1.410	1.429
C3	C4	1.525	1.532
O3	S12	1.387	1.522
C4	O4	1.410	1.429
C4	C5	1.524	1.530
C5	O5	1.410	1.428
C5	C6	1.524	1.531
C6	O6	1.410	1.429
O12	S12	1.502	1.521
S12	O22	1.463	1.421
S12	O32	1.466	1.421
N2	HN21	1.000	0.970
C1	H1	1.100	1.090
O1	HO1	0.951	0.967
C2	H2	1.100	1.090
C3	H3	1.100	1.090
C4	H4	1.100	1.089
O4	HO4	0.950	0.968
C5	H5	1.100	1.091
C6	H61	1.100	1.090
C6	H62	1.100	1.090
O6	HO6	0.950	0.967
O12	HO12	0.950	0.967
O3S	HO3S	0.950	0.967

Bond Angles for GNX

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
S1	N2	C2	120.0	120.0
N2	S1	O1S	106.8	106.4
N2	S1	O2S	106.8	106.5
N2	S1	O3S	106.8	107.2
S1	N2	HN21	106.1	120.0
N2	C2	C1	110.0	109.6
N2	C2	C3	110.0	109.5
C2	N2	HN21	106.1	120.0
N2	C2	H2	109.2	109.5
O1	C1	C2	109.5	109.5
O1	C1	O5	109.5	109.5
O1	C1	H1	109.5	109.5
C1	O1	HO1	109.5	114.0
C2	C1	O5	109.5	109.4
C1	C2	C3	110.9	109.2
C2	C1	H1	109.5	109.5
C1	C2	H2	108.3	109.6
C1	O5	C5	111.8	114.1
O5	C1	H1	109.5	109.5
O1S	S1	O2S	112.3	123.1
O1S	S1	O3S	111.8	106.4
O2S	S1	O3S	111.9	106.4
S1	O3S	HO3S	109.5	114.0
C2	C3	O3	109.5	109.5
C2	C3	C4	111.0	109.0
C3	C2	H2	108.3	109.6
C2	C3	H3	108.4	109.6
O3	C3	C4	109.4	109.6
C3	O3	S12	137.3	114.0
O3	C3	H3	110.0	109.5
C3	C4	O4	109.5	109.5
C3	C4	C5	111.0	109.1
C4	C3	H3	108.5	109.7
C3	C4	H4	108.5	109.6
O3	S12	O12	111.4	107.2
O3	S12	O22	126.3	106.4
O3	S12	O32	95.6	106.4
O4	C4	C5	109.5	109.5
O4	C4	H4	110.0	109.6
C4	O4	HO4	109.5	113.9
C4	C5	O5	109.5	109.4
C4	C5	C6	111.0	109.5
C5	C4	H4	108.5	109.6
C4	C5	H5	108.4	109.5
O5	C5	C6	109.5	109.5
O5	C5	H5	110.0	109.5
C5	C6	O6	109.5	109.5
C6	C5	H5	108.4	109.5
C5	C6	H61	109.5	109.4
C5	C6	H62	109.5	109.4
O6	C6	H61	109.5	109.5
O6	C6	H62	109.5	109.5
C6	O6	HO6	109.5	114.0
O12	S12	O22	107.5	106.4
O12	S12	O32	107.8	106.4
S12	O12	HO12	109.5	114.0
O22	S12	O32	106.4	123.1
H61	C6	H62	109.5	109.5

Torsion Angles for GNX

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
S1	N2	C2	C1	107.8	94.9
S1	N2	C2	C3	230.3	214.6
C2	N2	S1	HN21	240.0	180.4
S1	N2	C2	H2	349.0	334.8
O1S	S1	N2	O2S	239.6	227.0
O1S	S1	N2	O3S	119.8	113.5
O2S	S1	N2	O3S	240.2	246.5
N2	S1	O3S	HO3S	243.5	180.0
C2	N2	S1	O1S	49.3	178.6
C2	N2	S1	O2S	169.6	311.5
C2	N2	S1	O3S	289.5	65.1
S1	N2	C2	HN21	120.0	179.6
O1	C1	C2	N2	57.7	57.5
N2	C2	C1	O5	177.8	177.5
C1	C2	N2	C3	237.5	240.3
N2	C2	C1	H1	297.8	297.5
C1	C2	N2	H2	118.7	120.2
N2	C2	C3	O3	68.9	63.2
N2	C2	C3	C4	189.9	183.0
C3	C2	N2	H2	241.2	239.8
N2	C2	C3	H3	308.9	303.0
N2	C2	C1	O1	57.7	57.5
C2	C1	O1	O5	120.0	119.9
O1	C1	C2	C3	295.8	297.6
C2	C1	O1	H1	240.0	240.0
O1	C1	C2	H2	177.1	177.6
O1	C1	O5	C5	54.4	58.8
O5	C1	O1	H1	120.0	120.0
N2	C2	C1	C3	122.0	119.9
C1	C2	N2	HN21	347.7	275.4
N2	C2	C1	H2	240.7	239.9
O1	C1	C2	O5	239.9	240.0
O1	C1	C2	H1	120.0	120.0
C2	C1	O1	HO1	180.0	180.0
C2	C1	O5	C5	294.3	298.8
O5	C1	C2	H1	240.0	240.0
C1	C2	C3	O3	190.9	183.1
C1	C2	C3	C4	311.8	303.0
C3	C2	C1	H2	118.7	120.0
C1	C2	C3	H3	70.9	63.0
O1	C1	O5	C2	120.0	120.0
O1	C1	O5	H1	240.0	240.0
O5	C1	O1	HO1	59.9	60.1
O5	C1	C2	C3	55.8	57.6
C2	C1	O5	H1	120.0	120.0
O5	C1	C2	H2	297.1	297.6
C4	C5	O5	C1	65.6	61.2
C1	O5	C5	C6	187.5	181.2
C1	O5	C5	H5	306.6	301.2
O1S	S1	N2	C2	49.3	178.6
N2	S1	O1S	O2S	116.8	123.0
N2	S1	O1S	O3S	243.5	245.9
O1S	S1	N2	HN21	169.3	358.2
O2S	S1	O1S	O3S	126.8	122.9
O1S	S1	O3S	HO3S	127.0	66.5
O2S	S1	N2	C2	169.6	311.5
N2	S1	O2S	O1S	243.2	237.0
N2	S1	O2S	O3S	116.5	114.1
O2S	S1	N2	HN21	289.6	131.1
O1S	S1	O2S	O3S	233.3	237.1
O2S	S1	O3S	HO3S	0.0	293.6
O3S	S1	N2	C2	289.5	65.1
N2	S1	O3S	O1S	116.5	113.5
N2	S1	O3S	O2S	243.5	246.4
O3S	S1	N2	HN21	49.5	244.6
O1S	S1	O3S	O2S	127.0	132.9
N2	C2	C3	C1	238.0	240.1
C3	C2	N2	HN21	110.3	35.1
N2	C2	C3	H2	119.3	120.1
C3	C2	C1	O5	55.8	57.6
C3	C2	C1	H1	175.8	177.6
C1	C2	C3	H2	241.3	240.0
O3	C3	C2	C4	239.1	240.2
C2	C3	O3	S12	215.4	215.0
O3	C3	C2	H3	120.0	120.1
C2	C3	C4	O4	169.0	176.9
C2	C3	C4	C5	48.1	57.0
C4	C3	C2	H3	241.0	240.0
C2	C3	C4	H4	289.1	297.0
C2	C3	O3	C4	121.9	119.5
O3	C3	C2	H2	309.6	303.1
C2	C3	O3	H3	241.0	239.8
O3	C3	C4	O4	290.0	296.7
O3	C3	C4	C5	169.1	176.8
C4	C3	O3	H3	119.1	120.3
O3	C3	C4	H4	50.0	56.9
C3	O3	S12	O12	188.9	75.0
C3	O3	S12	O22	322.3	188.6
C3	O3	S12	O32	77.3	321.5
C2	C3	C4	O3	239.0	240.2
C4	C3	C2	H2	70.5	63.0
C2	C3	C4	H3	119.0	119.9
C4	C3	O3	S12	93.6	95.5
O3	C3	C4	H3	240.0	239.8
O4	C4	C3	C5	120.9	119.8
O4	C4	C3	H4	240.0	239.8
C3	C4	O4	HO4	180.0	180.0
C3	C4	C5	O5	304.3	302.3
C3	C4	C5	C6	183.3	182.4
C5	C4	C3	H4	119.0	120.0
C3	C4	C5	H5	64.3	62.3
S12	O3	C3	C4	93.6	95.5
S12	O3	C3	H3	334.5	335.2
O12	S12	O3	O22	226.5	246.4
O12	S12	O3	O32	111.6	113.6
O3	S12	O12	HO12	142.1	180.0
O22	S12	O3	O32	245.0	227.1
C3	C4	O4	C5	238.1	240.4
O4	C4	C3	H3	50.0	56.9
C3	C4	O4	H4	119.1	120.2
O4	C4	C5	O5	183.3	182.5
O4	C4	C5	C6	62.4	62.6
C5	C4	O4	H4	240.9	239.8
O4	C4	C5	H5	303.4	302.5
C1	O5	C5	C4	65.6	61.2
C3	C4	C5	O4	120.9	119.8
C5	C4	C3	H3	289.1	297.1
C3	C4	C5	H4	241.0	240.0
O4	C4	C5	H4	120.0	120.2
C5	C4	O4	HO4	301.9	299.6
O5	C5	C4	C6	121.0	120.0
O5	C5	C4	H5	240.0	240.0
C4	C5	C6	O6	138.4	185.0
C6	C5	C4	H5	119.0	120.0
C4	C5	C6	H61	258.4	305.0
C4	C5	C6	H62	18.4	65.0
C5	O5	C1	H1	174.4	178.8
C4	C5	O5	C6	238.1	240.0
O5	C5	C4	H4	63.3	62.3
C4	C5	O5	H5	119.0	120.0
O5	C5	C6	O6	17.4	65.1
C6	C5	O5	H5	241.0	240.0
O5	C5	C6	H61	137.4	185.1
O5	C5	C6	H62	257.4	305.0
C4	C5	C6	O5	121.0	119.9
C6	C5	C4	H4	302.4	302.3
C4	C5	C6	H5	241.0	239.9
O5	C5	C6	H5	120.0	120.0
O6	C6	C5	H61	240.0	240.0
O6	C6	C5	H62	120.0	120.0
C5	C6	O6	HO6	180.0	180.0
H61	C6	C5	H62	240.0	240.0
O6	C6	C5	H5	257.4	305.1
C5	C6	O6	H61	120.0	120.0
C5	C6	O6	H62	240.0	240.0
H61	C6	O6	H62	120.0	120.1
O3	S12	O12	O22	142.1	113.5
O3	S12	O12	O32	256.4	246.4
O22	S12	O12	O32	114.2	132.9
O3	S12	O22	O12	225.1	245.9
O3	S12	O22	O32	109.9	122.9
O12	S12	O22	O32	244.8	237.0
O22	S12	O12	HO12	360.0	66.4
O3	S12	O32	O12	114.6	114.1
O3	S12	O32	O22	229.6	237.1
O12	S12	O32	O22	115.0	123.0
O32	S12	O12	HO12	245.7	293.5
S1	N2	HN21	C2	231.4	180.4
HN21	N2	S1	O1S	169.3	358.2
HN21	N2	S1	O2S	289.6	131.1
HN21	N2	S1	O3S	49.5	244.6
HN21	N2	C2	C1	347.7	275.4
HN21	N2	C2	C3	110.3	35.1
HN21	N2	C2	H2	229.0	155.2
O1	C1	H1	C2	240.0	240.0
O1	C1	H1	O5	120.0	120.1
H1	C1	O1	HO1	299.9	300.0
C2	C1	H1	O5	240.0	240.1
H1	C1	C2	C3	175.8	177.6
H1	C1	C2	H2	57.1	57.6
H1	C1	O5	C5	174.4	178.8
HO1	O1	C1	C2	180.0	180.0
HO1	O1	C1	O5	59.9	60.1
HO1	O1	C1	H1	299.9	300.0
N2	C2	H2	C1	119.8	120.2
N2	C2	H2	C3	240.2	239.9
H2	C2	N2	HN21	229.0	155.2
H2	C2	C1	O5	297.1	297.6
C1	C2	H2	C3	120.4	119.7
H2	C2	C1	H1	57.1	57.6
H2	C2	C3	O3	309.6	303.1
H2	C2	C3	C4	70.5	63.0
H2	C2	C3	H3	189.6	183.0
C2	C3	H3	O3	119.7	120.1
C2	C3	H3	C4	239.4	240.4
H3	C3	C2	H2	189.6	183.0
O3	C3	H3	C4	119.7	120.2
H3	C3	O3	S12	334.5	335.2
H3	C3	C4	O4	50.0	56.9
H3	C3	C4	C5	289.1	297.1
H3	C3	C4	H4	170.1	177.1
C3	C4	H4	O4	240.3	239.9
C3	C4	H4	C5	120.6	119.7
H4	C4	C3	H3	170.1	177.1
O4	C4	H4	C5	240.3	239.8
H4	C4	O4	HO4	60.9	59.8
H4	C4	C5	O5	63.3	62.3
H4	C4	C5	C6	302.4	302.3
H4	C4	C5	H5	183.3	182.3
HO4	O4	C4	C5	301.9	299.6
HO4	O4	C4	H4	60.9	59.8
C4	C5	H5	O5	240.3	240.0
C4	C5	H5	C6	120.6	120.0
H5	C5	C4	H4	183.3	182.3
O5	C5	H5	C6	240.3	240.0
H5	C5	C6	O6	257.4	305.1
H5	C5	C6	H61	17.4	65.1
H5	C5	C6	H62	137.4	185.0
C5	C6	H61	O6	240.0	240.0
H61	C6	C5	H5	17.4	65.1
C5	C6	H61	H62	120.0	119.9
O6	C6	H61	H62	240.0	239.9
H61	C6	O6	HO6	60.0	60.1
C5	C6	H62	O6	120.0	120.0
H62	C6	C5	H5	137.4	185.0
C5	C6	H62	H61	240.0	240.1
O6	C6	H62	H61	120.0	120.1
H62	C6	O6	HO6	300.0	300.0
HO6	O6	C6	H61	60.0	60.1
HO6	O6	C6	H62	300.0	300.0
HO12	O12	S12	O22	360.0	66.4
HO12	O12	S12	O32	245.7	293.5