PDB Chemical Component GNT

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GNT

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.320	1.290
C1	C42	1.556	1.491
C1	H1	1.103	1.080
C2	C3	1.503	1.496
C2	H2	1.103	1.080
C3	C4	1.582	1.514
C3	O18	1.406	1.429
C3	H3	1.115	1.091
C4	C41	1.546	1.505
C4	H41A	1.114	1.090
C4	H42	1.115	1.090
C41	C42	1.563	1.530
C41	O5	1.479	1.433
C41	H41	1.115	1.090
C42	C12	1.537	1.515
C42	C14	1.548	1.519
O5	C13	1.374	1.351
C6	C7	1.415	1.389
C6	C13	1.421	1.400
C6	O17	1.385	1.361
C7	C8	1.392	1.373
C7	H7	1.103	1.080
C8	C15	1.416	1.404
C8	H8	1.104	1.080
C9	N10	1.491	1.447
C9	C15	1.489	1.500
C9	H91	1.115	1.090
C9	H92	1.115	1.091
N10	C11	1.489	1.432
N10	C19	1.505	1.469
C11	C12	1.531	1.500
C11	H111	1.116	1.089
C11	H112	1.114	1.090
C12	H121	1.114	1.091
C12	H122	1.115	1.089
C13	C14	1.419	1.400
C14	C15	1.399	1.360
C16	O17	1.397	1.429
C16	H161	1.115	1.090
C16	H162	1.115	1.089
C16	H163	1.115	1.089
O18	H18	0.950	0.966
C19	H191	1.114	1.089
C19	H192	1.116	1.090
C19	H193	1.116	1.090

Bond Angles for GNT

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C42	125.2	125.2
C2	C1	H1	108.4	117.4
C1	C2	C3	124.1	123.8
C1	C2	H2	111.0	118.1
C42	C1	H1	126.4	117.4
C1	C42	C41	111.5	112.9
C1	C42	C12	112.7	111.8
C1	C42	C14	107.8	109.2
C3	C2	H2	124.9	118.1
C2	C3	C4	114.4	111.9
C2	C3	O18	107.7	109.0
C2	C3	H3	106.9	109.0
C4	C3	O18	108.1	109.0
C4	C3	H3	106.5	109.0
C3	C4	C41	112.5	113.8
C3	C4	H41A	111.1	108.6
C3	C4	H42	111.1	108.6
O18	C3	H3	113.3	109.0
C3	O18	H18	107.7	106.9
C41	C4	H41A	111.1	108.6
C41	C4	H42	111.1	108.7
C4	C41	C42	115.3	114.2
C4	C41	O5	109.6	112.2
C4	C41	H41	104.7	109.0
H41A	C4	H42	99.3	108.4
C42	C41	O5	107.3	104.0
C42	C41	H41	107.1	108.2
C41	C42	C12	112.0	110.1
C41	C42	C14	98.4	102.0
O5	C41	H41	113.0	108.9
C41	O5	C13	105.6	109.0
C12	C42	C14	113.6	110.4
C42	C12	C11	118.3	112.3
C42	C12	H121	109.0	108.9
C42	C12	H122	109.0	109.0
C42	C14	C13	108.4	105.7
C42	C14	C15	130.8	131.2
O5	C13	C6	124.8	127.3
O5	C13	C14	112.8	112.3
C7	C6	C13	116.1	116.8
C7	C6	O17	125.0	121.6
C6	C7	C8	121.1	121.7
C6	C7	H7	120.3	119.1
C13	C6	O17	117.8	121.6
C6	C13	C14	122.4	120.3
C6	O17	C16	120.2	106.8
C8	C7	H7	118.6	119.2
C7	C8	C15	123.0	122.0
C7	C8	H8	117.6	119.0
C15	C8	H8	119.5	119.0
C8	C15	C9	120.9	115.6
C8	C15	C14	116.8	116.2
N10	C9	C15	113.4	113.2
N10	C9	H91	110.8	108.8
N10	C9	H92	110.8	108.8
C9	N10	C11	113.6	111.9
C9	N10	C19	110.0	106.7
C15	C9	H91	110.7	108.7
C15	C9	H92	110.8	108.7
C9	C15	C14	122.3	128.1
H91	C9	H92	99.5	108.6
C11	N10	C19	111.8	106.7
N10	C11	C12	112.8	115.2
N10	C11	H111	111.0	108.3
N10	C11	H112	111.0	108.3
N10	C19	H191	110.0	109.5
N10	C19	H192	112.0	109.5
N10	C19	H193	112.0	109.5
C12	C11	H111	111.0	108.3
C12	C11	H112	111.0	108.4
C11	C12	H121	109.0	108.9
C11	C12	H122	109.0	109.0
H111	C11	H112	99.3	108.1
H121	C12	H122	101.1	108.8
C13	C14	C15	120.6	122.9
O17	C16	H161	120.2	109.4
O17	C16	H162	108.4	109.5
O17	C16	H163	108.4	109.5
H161	C16	H162	108.4	109.5
H161	C16	H163	108.3	109.5
H162	C16	H163	101.5	109.5
H191	C19	H192	112.0	109.5
H191	C19	H193	112.1	109.4
H192	C19	H193	98.4	109.4

Torsion Angles for GNT

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C42	C1	C2	H1	180.0	180.0
C2	C1	C42	C41	351.1	353.3
C2	C1	C42	C12	117.9	118.0
C2	C1	C42	C14	244.1	240.6
C3	C2	C1	H2	180.0	180.0
C1	C2	C3	C4	350.4	341.9
C1	C2	C3	O18	110.6	102.5
C1	C2	C3	H3	232.7	221.3
C2	C1	C42	H1	180.0	180.0
C42	C1	C2	C3	356.1	0.4
C42	C1	C2	H2	176.1	180.4
C4	C41	C42	C1	35.5	31.0
C1	C42	C41	O5	273.1	268.3
C1	C42	C41	H41	151.5	152.6
C41	C42	C1	C12	233.1	235.3
C41	C42	C1	C14	106.9	112.7
C12	C42	C1	C14	233.8	237.5
C1	C42	C12	C11	62.1	58.3
C1	C42	C12	H121	187.3	297.6
C1	C42	C12	H122	296.9	179.1
C1	C42	C14	C13	98.8	101.3
C1	C42	C14	C15	282.6	286.2
C2	C1	H1	C42	180.0	180.0
H1	C1	C2	C3	176.1	180.4
H1	C1	C2	H2	356.1	0.4
H1	C1	C42	C41	171.1	173.3
H1	C1	C42	C12	297.9	298.0
H1	C1	C42	C14	64.1	60.6
C3	C2	C1	C42	356.1	0.4
C3	C2	C1	H1	176.1	180.4
C1	C2	C3	H2	180.0	180.0
C4	C3	C2	O18	239.8	239.4
C4	C3	C2	H3	117.7	120.6
C2	C3	C4	C41	35.2	42.0
C2	C3	C4	H41A	160.4	163.2
C2	C3	C4	H42	270.0	280.8
O18	C3	C2	H3	237.9	241.2
C2	C3	O18	H18	180.0	60.0
H2	C2	C1	C42	176.1	180.4
H2	C2	C1	H1	356.1	0.4
C1	C2	H2	C3	180.0	180.0
H2	C2	C3	C4	170.4	161.9
H2	C2	C3	O18	290.6	282.5
H2	C2	C3	H3	52.7	41.3
C4	C3	C2	H2	170.4	161.9
C2	C3	C4	O18	120.0	120.6
C2	C3	C4	H3	242.1	239.4
O18	C3	C4	H3	122.1	118.9
C4	C3	O18	H18	304.1	182.3
C41	C4	C3	H41A	234.8	238.9
C41	C4	C3	H42	125.2	121.2
C3	C4	C41	C42	311.0	310.2
C3	C4	C41	O5	72.1	68.3
C3	C4	C41	H41	193.6	189.1
H41A	C4	C3	H42	250.5	242.3
O18	C3	C2	H2	290.6	282.5
C2	C3	O18	C4	235.9	237.7
C2	C3	O18	H3	118.0	118.8
C4	C3	O18	H3	242.1	241.1
O18	C3	C4	C41	275.2	281.5
O18	C3	C4	H41A	40.4	42.6
O18	C3	C4	H42	150.0	160.3
H3	C3	C2	H2	52.7	41.3
C2	C3	H3	C4	122.8	122.4
C2	C3	H3	O18	241.5	241.2
C4	C3	H3	O18	118.8	118.8
H3	C3	C4	C41	153.1	162.6
H3	C3	C4	H41A	278.3	283.7
H3	C3	C4	H42	27.8	41.4
H3	C3	O18	H18	62.0	301.2
C1	C42	C41	C4	35.5	31.0
C41	C4	C3	O18	275.2	281.5
C41	C4	C3	H3	153.1	162.6
C3	C4	C41	H41A	125.2	121.1
C3	C4	C41	H42	234.8	238.9
H41A	C4	C41	H42	109.5	117.8
C42	C41	C4	O5	238.9	241.9
C42	C41	C4	H41	117.4	121.1
C4	C41	C42	C12	268.2	265.3
C4	C41	C42	C14	148.5	148.1
O5	C41	C4	H41	238.5	239.2
C4	C41	O5	C13	207.5	211.6
H41A	C4	C3	O18	40.4	42.6
H41A	C4	C3	H3	278.3	283.7
C3	C4	H41A	C41	234.0	235.7
C3	C4	H41A	H42	117.0	117.8
C41	C4	H41A	H42	243.0	242.1
H41A	C4	C41	C42	185.8	189.1
H41A	C4	C41	O5	306.9	307.2
H41A	C4	C41	H41	68.4	68.0
H42	C4	C3	O18	150.0	160.3
H42	C4	C3	H3	27.8	41.4
C3	C4	H42	C41	126.1	124.3
C3	C4	H42	H41A	243.0	242.2
C41	C4	H42	H41A	117.0	117.9
H42	C4	C41	C42	76.2	71.3
H42	C4	C41	O5	197.3	189.4
H42	C4	C41	H41	318.8	310.2
C41	C42	C1	H1	171.1	173.3
C1	C42	C41	C12	127.3	125.7
C1	C42	C41	C14	247.0	242.9
C42	C41	C4	H41A	185.8	189.1
C42	C41	C4	H42	76.2	71.3
C4	C41	C42	O5	122.4	122.7
C4	C41	C42	H41	244.0	238.4
O5	C41	C42	H41	121.6	115.8
C42	C41	O5	C13	333.3	335.6
C12	C42	C41	C14	119.8	117.2
C41	C42	C12	C11	188.7	184.6
C41	C42	C12	H121	314.0	63.9
C41	C42	C12	H122	63.5	305.4
C41	C42	C14	C13	342.9	341.6
C41	C42	C14	C15	166.7	166.5
O5	C41	C4	H41A	306.9	307.2
O5	C41	C4	H42	197.3	189.4
C4	C41	O5	C42	234.2	236.1
C4	C41	O5	H41	116.3	120.8
C42	C41	O5	H41	242.1	244.8
O5	C41	C42	C12	145.8	142.7
O5	C41	C42	C14	26.1	25.4
C41	O5	C13	C6	194.2	190.0
C41	O5	C13	C14	15.5	13.1
H41	C41	C4	H41A	68.4	68.0
H41	C41	C4	H42	318.8	310.2
C4	C41	H41	C42	122.8	124.7
C4	C41	H41	O5	240.8	237.2
C42	C41	H41	O5	117.9	112.5
H41	C41	C42	C12	24.2	26.9
H41	C41	C42	C14	264.5	269.7
H41	C41	O5	C13	91.2	90.8
C12	C42	C1	H1	297.9	298.0
C1	C42	C12	C41	233.4	233.7
C1	C42	C12	C14	123.0	121.8
C12	C42	C41	O5	145.8	142.7
C12	C42	C41	H41	24.2	26.9
C41	C42	C12	C14	249.6	248.1
C12	C42	C14	C13	224.4	224.6
C12	C42	C14	C15	48.2	49.5
N10	C11	C12	C42	67.7	82.4
C42	C12	C11	H111	302.5	320.9
C42	C12	C11	H112	193.0	203.8
C11	C12	C42	H121	234.8	120.7
C11	C12	C42	H122	125.2	239.2
H121	C12	C42	H122	250.5	118.5
C14	C42	C1	H1	64.1	60.6
C1	C42	C14	C41	115.9	119.7
C1	C42	C14	C12	234.4	236.7
C14	C42	C41	O5	26.1	25.4
C14	C42	C41	H41	264.5	269.7
C41	C42	C14	C12	118.5	117.0
C14	C42	C12	C11	299.1	296.4
C14	C42	C12	H121	64.3	175.8
C14	C42	C12	H122	173.9	57.2
O5	C13	C14	C42	2.0	4.4
C6	C13	C14	C42	183.2	187.2
C8	C15	C14	C42	175.9	171.1
C9	C15	C14	C42	355.6	347.7
C13	C14	C42	C15	176.2	175.1
C13	O5	C41	H41	91.2	90.8
C42	C14	C13	O5	2.0	4.4
C7	C6	C13	O5	181.4	182.7
O5	C13	C6	O17	13.0	3.0
C6	C13	O5	C14	178.7	176.9
O5	C13	C14	C15	178.6	180.0
O5	C13	C6	C7	181.4	182.7
C13	C6	C7	O17	192.6	180.4
C7	C6	C13	C14	0.0	359.4
C7	C6	O17	C16	56.4	0.1
C8	C7	C6	H7	180.0	180.1
C6	C7	C8	C15	359.9	0.4
C6	C7	C8	H8	179.9	180.4
C42	C14	C13	C6	183.2	187.2
O5	C13	C6	C14	181.4	183.3
C7	C6	C13	O17	168.4	179.6
C13	C6	C7	C8	0.1	359.1
C13	C6	C7	H7	180.1	179.0
C13	C6	O17	C16	223.7	179.7
C6	C13	C14	C15	359.9	2.8
C7	C6	O17	C13	192.8	180.4
O17	C6	C7	C8	167.5	178.7
O17	C6	C7	H7	347.5	358.6
O17	C6	C13	C14	191.6	179.8
C6	O17	C16	H161	180.0	180.0
C6	O17	C16	H162	305.3	300.0
C6	O17	C16	H163	54.7	60.0
C8	C7	C6	C13	0.1	359.1
C8	C7	C6	O17	167.5	178.7
C6	C7	C8	H7	180.0	179.9
C15	C8	C7	H8	180.1	180.0
C7	C8	C15	C9	180.3	184.6
C7	C8	C15	C14	359.9	1.7
H7	C7	C6	C13	180.1	179.0
H7	C7	C6	O17	347.5	358.6
C6	C7	H7	C8	180.0	180.1
H7	C7	C8	C15	180.0	180.5
H7	C7	C8	H8	359.9	0.5
C42	C14	C15	C8	175.9	171.1
C15	C8	C7	H7	180.0	180.5
C7	C8	C15	H8	179.9	180.0
N10	C9	C15	C8	127.6	138.9
C8	C15	C9	H91	2.4	259.9
C8	C15	C9	H92	252.9	17.9
C9	C15	C8	C14	180.3	183.0
C13	C14	C15	C8	0.1	356.8
H8	C8	C7	H7	359.9	0.5
C7	C8	H8	C15	180.0	180.0
H8	C8	C15	C9	0.3	4.7
H8	C8	C15	C14	180.0	181.7
C8	C15	C9	N10	127.6	138.9
C15	C9	N10	H91	234.7	120.9
C15	C9	N10	H92	125.3	239.0
N10	C9	C15	C14	308.0	322.3
H91	C9	N10	H92	250.5	118.1
C11	N10	C9	C19	233.8	243.7
C9	N10	C11	C12	280.9	271.8
C9	N10	C11	H111	46.1	33.2
C9	N10	C11	H112	155.6	150.3
C9	N10	C19	H191	180.0	293.8
C9	N10	C19	H192	305.3	53.8
C9	N10	C19	H193	54.7	173.8
C42	C14	C15	C9	355.6	347.7
C9	C15	C8	H8	0.3	4.7
C8	C15	C9	C14	179.7	176.6
N10	C9	C15	H91	125.3	239.0
N10	C9	C15	H92	234.7	121.0
C15	C9	N10	C11	83.4	70.5
C15	C9	N10	C19	209.5	186.9
H91	C9	C15	H92	109.4	242.0
C13	C14	C15	C9	179.8	173.3
N10	C9	H91	C15	233.3	123.6
N10	C9	H91	H92	116.6	241.8
H91	C9	N10	C11	208.6	309.6
H91	C9	N10	C19	334.8	65.9
C15	C9	H91	H92	243.4	118.1
H91	C9	C15	C14	182.7	83.3
N10	C9	H92	C15	126.7	236.4
N10	C9	H92	H91	243.3	118.2
H92	C9	N10	C11	318.1	191.5
H92	C9	N10	C19	84.3	307.8
C15	C9	H92	H91	116.6	241.9
H92	C9	C15	C14	73.3	201.3
C42	C12	C11	N10	67.7	82.4
C11	N10	C9	C15	83.4	70.5
C11	N10	C9	H91	208.6	309.6
C11	N10	C9	H92	318.1	191.5
C9	N10	C11	C19	125.2	116.4
C11	N10	C19	H191	307.2	53.5
C11	N10	C19	H192	72.5	173.5
C11	N10	C19	H193	181.9	293.5
C12	C11	N10	H111	234.8	238.5
C12	C11	N10	H112	125.3	121.5
N10	C11	C12	H121	302.5	203.0
N10	C11	C12	H122	192.9	321.6
H111	C11	N10	H112	250.5	243.0
C19	N10	C9	C15	209.5	186.9
C19	N10	C9	H91	334.8	65.9
C19	N10	C9	H92	84.3	307.8
C9	N10	C19	C11	232.8	240.3
C19	N10	C11	C12	155.7	155.4
C19	N10	C11	H111	280.9	276.9
C19	N10	C11	H112	30.4	33.9
H191	C19	N10	H192	234.7	240.0
H191	C19	N10	H193	125.3	120.0
H192	C19	N10	H193	250.6	240.0
C11	C12	C42	C14	299.1	296.4
C42	C12	C11	H121	125.2	239.3
C42	C12	C11	H122	234.8	120.8
C12	C11	N10	C19	155.7	155.4
N10	C11	C12	H111	125.2	121.4
N10	C11	C12	H112	234.7	238.5
H111	C11	C12	H112	109.4	117.1
H121	C12	C11	H122	109.6	241.5
H111	C11	N10	C19	280.9	276.9
N10	C11	H111	C12	233.7	234.4
N10	C11	H111	H112	116.9	117.2
C12	C11	H111	H112	243.1	242.7
H111	C11	C12	H121	177.2	81.6
H111	C11	C12	H122	67.7	200.1
H112	C11	N10	C19	30.4	33.9
N10	C11	H112	C12	126.3	125.6
N10	C11	H112	H111	243.2	242.8
C12	C11	H112	H111	116.8	117.2
H112	C11	C12	H121	67.8	324.5
H112	C11	C12	H122	318.2	83.0
H121	C12	C42	C14	64.3	175.8
C42	C12	H121	C11	229.5	122.7
C42	C12	H121	H122	114.7	241.4
H121	C12	C11	H111	177.2	81.6
H121	C12	C11	H112	67.8	324.5
C11	C12	H121	H122	245.2	118.6
H122	C12	C42	C14	173.9	57.2
C42	C12	H122	C11	130.5	237.2
C42	C12	H122	H121	245.2	118.6
H122	C12	C11	H111	67.7	200.1
H122	C12	C11	H112	318.2	83.0
C11	C12	H122	H121	114.8	241.4
C42	C14	C13	C15	183.4	184.4
O5	C13	C14	C6	178.8	177.2
C14	C13	C6	O17	191.6	179.8
C8	C15	C14	C13	0.1	356.8
C9	C15	C14	C13	179.8	173.3
C42	C14	C15	C13	175.8	174.4
C14	C15	C8	H8	180.0	181.7
C8	C15	C14	C9	180.3	183.4
C14	C15	C9	H91	182.7	83.3
C14	C15	C9	H92	73.3	201.3
H161	C16	O17	H162	234.7	240.0
H161	C16	O17	H163	125.3	120.0
H162	C16	O17	H163	250.6	240.0
O17	C16	H161	H162	125.3	120.0
O17	C16	H161	H163	234.7	240.0
H162	C16	H161	H163	109.4	120.0
O17	C16	H162	H161	228.0	240.0
O17	C16	H162	H163	114.0	120.0
H161	C16	H162	H163	246.0	240.0
O17	C16	H163	H161	132.0	120.0
O17	C16	H163	H162	246.0	240.0
H161	C16	H163	H162	114.0	120.0
H18	O18	C3	H3	62.0	301.2
N10	C19	H191	H192	125.3	120.0
N10	C19	H191	H193	234.7	239.9
H192	C19	H191	H193	109.5	119.9
N10	C19	H192	H191	235.8	240.0
N10	C19	H192	H193	117.9	120.1
H191	C19	H192	H193	242.0	240.1
N10	C19	H193	H191	124.2	120.0
N10	C19	H193	H192	242.1	239.9
H191	C19	H193	H192	118.0	119.9