PDB Chemical Component GNH

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GNH

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N3B PB 1.655 1.682
N3B HN31 1.050 1.009
N3B HN32 1.032 1.010
PB O1B 1.501 1.479
PB O2B 1.472 1.609
PB O3A 1.605 1.610
O2B HOB2 0.951 0.967
O3A PA 1.614 1.609
PA O1A 1.495 1.479
PA O2A 1.492 1.610
PA O5' 1.621 1.610
O2A HOA2 0.951 0.967
O5' C5' 1.391 1.428
C5' C4' 1.475 1.530
C5' H5'2 1.088 1.090
C5' H5'1 1.080 1.091
C4' O4' 1.424 1.443
C4' C3' 1.520 1.543
C4' H4' 1.094 1.091
O4' C1' 1.430 1.445
C3' O3' 1.427 1.429
C3' C2' 1.583 1.547
C3' H3' 1.091 1.090
O3' HO3' 0.960 0.967
C2' O2' 1.455 1.429
C2' C1' 1.535 1.544
C2' H2' 1.093 1.090
O2' HO2' 0.965 0.967
C1' N9 1.393 1.463
C1' H1' 1.089 1.090
N9 C8 1.365 1.365
N9 C4 1.346 1.369
C8 N7 1.298 1.301
C8 H8 1.088 1.080
N7 C5 1.391 1.355
C5 C6 1.448 1.415
C5 C4 1.390 1.399
C6 O6 1.235 1.219
C6 N1 1.387 1.350
N1 C2 1.379 1.363
N1 HN1 1.012 0.970
C2 N2 1.328 1.371
C2 N3 1.349 1.315
N2 HN21 0.978 0.970
N2 HN22 0.984 0.970
N3 C4 1.326 1.337

Bond Angles for GNH

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
PB N3B HN31 115.3 106.8
PB N3B HN32 128.9 106.7
N3B PB O1B 114.6 109.5
N3B PB O2B 112.3 109.5
N3B PB O3A 93.9 109.4
HN31 N3B HN32 115.5 106.7
O1B PB O2B 119.7 109.5
O1B PB O3A 111.2 109.5
O2B PB O3A 101.0 109.5
PB O2B HOB2 112.2 106.8
PB O3A PA 122.9 106.8
O3A PA O1A 108.0 109.5
O3A PA O2A 111.9 109.5
O3A PA O5' 93.9 109.5
O1A PA O2A 121.1 109.5
O1A PA O5' 108.6 109.4
O2A PA O5' 109.9 109.5
PA O2A HOA2 111.9 106.8
PA O5' C5' 129.5 106.9
O5' C5' C4' 105.6 109.6
O5' C5' H5'2 110.9 109.4
O5' C5' H5'1 109.5 109.5
C4' C5' H5'2 108.2 109.4
C4' C5' H5'1 111.7 109.5
C5' C4' O4' 105.3 110.3
C5' C4' C3' 111.1 110.5
C5' C4' H4' 112.5 110.2
H5'2 C5' H5'1 110.9 109.5
O4' C4' C3' 104.1 104.9
O4' C4' H4' 110.7 110.4
C4' O4' C1' 112.6 105.2
C3' C4' H4' 112.5 110.3
C4' C3' O3' 112.5 110.6
C4' C3' C2' 101.7 104.1
C4' C3' H3' 108.0 110.5
O4' C1' C2' 105.4 104.9
O4' C1' N9 110.9 110.4
O4' C1' H1' 109.1 110.3
O3' C3' C2' 119.5 110.6
O3' C3' H3' 105.4 110.4
C3' O3' HO3' 113.2 106.8
C2' C3' H3' 109.4 110.5
C3' C2' O2' 116.9 110.5
C3' C2' C1' 104.1 104.0
C3' C2' H2' 104.6 110.5
O2' C2' C1' 113.1 110.8
O2' C2' H2' 109.5 110.5
C2' O2' HO2' 106.2 106.8
C1' C2' H2' 107.9 110.4
C2' C1' N9 115.4 110.4
C2' C1' H1' 108.9 110.4
N9 C1' H1' 107.0 110.3
C1' N9 C8 133.0 126.3
C1' N9 C4 123.3 126.3
C8 N9 C4 102.6 107.4
N9 C8 N7 118.0 109.8
N9 C8 H8 122.0 125.0
N9 C4 C5 108.3 106.2
N9 C4 N3 122.5 134.1
N7 C8 H8 119.4 125.2
C8 N7 C5 101.4 109.3
N7 C5 C6 129.6 134.1
N7 C5 C4 109.7 107.3
C6 C5 C4 120.7 118.6
C5 C6 O6 130.0 120.8
C5 C6 N1 110.0 118.3
C5 C4 N3 129.2 119.7
O6 C6 N1 120.0 120.8
C6 N1 C2 123.1 120.4
C6 N1 HN1 119.8 119.8
C2 N1 HN1 117.1 119.8
N1 C2 N2 115.4 119.1
N1 C2 N3 128.3 121.8
N2 C2 N3 116.3 119.1
C2 N2 HN21 121.2 120.0
C2 N2 HN22 121.6 120.0
C2 N3 C4 108.7 121.2
HN21 N2 HN22 117.1 120.0

Torsion Angles for GNH

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
HN31 N3B PB HN32 187.1 113.8
O1B PB N3B O2B 219.1 240.0
O1B PB N3B O3A 115.5 120.0
O2B PB N3B O3A 256.4 240.0
N3B PB O2B HOB2 180.0 60.0
N3B PB O3A PA 130.8 180.0
PB N3B HN31 HN32 173.9 246.2
HN31 N3B PB O1B 312.5 53.7
HN31 N3B PB O2B 93.4 173.8
HN31 N3B PB O3A 197.0 293.8
PB N3B HN32 HN31 187.1 113.9
HN32 N3B PB O1B 125.4 300.0
HN32 N3B PB O2B 266.3 60.0
HN32 N3B PB O3A 9.9 180.0
O1B PB N3B HN31 312.5 53.7
O1B PB N3B HN32 125.4 300.0
N3B PB O1B O2B 137.8 120.0
N3B PB O1B O3A 255.0 240.0
O2B PB O1B O3A 117.2 120.0
O1B PB O2B HOB2 318.7 180.0
O1B PB O3A PA 12.5 60.0
O2B PB N3B HN31 93.4 173.8
O2B PB N3B HN32 266.3 60.0
N3B PB O2B O1B 221.3 240.0
N3B PB O2B O3A 98.9 120.0
O1B PB O2B O3A 237.6 240.0
O2B PB O3A PA 244.4 300.0
O3A PB N3B HN31 197.0 293.8
O3A PB N3B HN32 9.9 180.0
N3B PB O3A O1B 118.3 120.0
N3B PB O3A O2B 246.4 240.0
O1B PB O3A O2B 128.1 120.0
O3A PB O2B HOB2 81.1 300.0
PB O3A PA O1A 297.0 300.0
PB O3A PA O2A 72.7 60.0
PB O3A PA O5' 186.0 180.0
HOB2 O2B PB O3A 81.1 300.0
O1A PA O3A O2A 224.2 240.0
O1A PA O3A O5' 111.0 120.0
O2A PA O3A O5' 246.7 240.0
O3A PA O2A HOA2 180.0 60.0
O3A PA O5' C5' 205.2 180.0
O3A PA O1A O2A 130.9 120.0
O3A PA O1A O5' 259.3 240.0
O2A PA O1A O5' 128.5 120.0
O1A PA O2A HOA2 309.3 180.0
O1A PA O5' C5' 94.7 60.0
O3A PA O2A O1A 230.8 239.9
O3A PA O2A O5' 102.9 120.0
O1A PA O2A O5' 232.1 240.0
O2A PA O5' C5' 320.2 300.0
O3A PA O5' O1A 110.5 120.0
O3A PA O5' O2A 245.0 240.0
O1A PA O5' O2A 134.5 120.0
O5' PA O2A HOA2 77.1 300.0
PA O5' C5' C4' 158.5 180.0
PA O5' C5' H5'2 275.5 300.0
PA O5' C5' H5'1 38.1 59.9
HOA2 O2A PA O5' 77.1 300.0
C4' C5' O5' H5'2 243.1 240.0
C4' C5' O5' H5'1 120.4 120.1
O5' C5' C4' O4' 189.7 61.4
O5' C5' C4' C3' 301.8 176.9
O5' C5' C4' H4' 69.0 299.2
H5'2 C5' O5' H5'1 237.3 240.0
O5' C5' C4' H5'2 118.7 120.0
O5' C5' C4' H5'1 241.0 239.9
H5'2 C5' C4' H5'1 122.3 120.0
O4' C4' C5' C3' 247.8 244.5
O4' C4' C5' H4' 120.7 122.2
C5' C4' O4' C1' 87.0 159.5
C3' C4' C5' H4' 232.9 237.7
C5' C4' C3' O3' 152.2 98.3
C5' C4' C3' C2' 281.3 217.0
C5' C4' C3' H3' 36.4 335.7
O5' C5' H5'2 C4' 244.7 240.0
O5' C5' H5'2 H5'1 121.9 120.0
C4' C5' H5'2 H5'1 237.2 240.0
H5'2 C5' C4' O4' 70.9 301.4
H5'2 C5' C4' C3' 183.1 57.0
H5'2 C5' C4' H4' 310.3 179.2
O5' C5' H5'1 C4' 116.6 120.1
O5' C5' H5'1 H5'2 237.4 240.1
C4' C5' H5'1 H5'2 120.7 119.9
H5'1 C5' C4' O4' 308.6 181.5
H5'1 C5' C4' C3' 60.8 297.0
H5'1 C5' C4' H4' 188.0 59.3
O4' C4' C5' H5'2 70.9 301.4
O4' C4' C5' H5'1 308.6 181.5
C5' C4' O4' C3' 117.0 119.0
C5' C4' O4' H4' 238.2 237.9
C3' C4' O4' H4' 121.1 118.9
O4' C4' C3' O3' 265.1 217.2
O4' C4' C3' C2' 34.2 335.9
O4' C4' C3' H3' 149.3 94.6
C4' O4' C1' C2' 11.5 319.6
C4' O4' C1' N9 245.9 200.6
C4' O4' C1' H1' 128.3 78.4
C3' C4' C5' H5'2 183.1 57.0
C3' C4' C5' H5'1 60.8 297.0
C5' C4' C3' O4' 247.1 241.1
C5' C4' C3' H4' 127.1 122.2
O4' C4' C3' H4' 240.0 241.1
C3' C4' O4' C1' 330.0 40.5
O3' C3' C4' C2' 230.9 241.3
O3' C3' C4' H3' 115.9 122.6
C4' C3' O3' HO3' 109.5 180.0
C2' C3' C4' H3' 244.9 241.3
C4' C3' C2' O2' 206.9 241.2
C4' C3' C2' C1' 332.5 0.1
C4' C3' C2' H2' 85.6 118.6
H4' C4' C5' H5'2 310.3 179.2
H4' C4' C5' H5'1 188.0 59.3
C5' C4' H4' O4' 117.5 122.2
C5' C4' H4' C3' 233.6 237.6
O4' C4' H4' C3' 116.1 115.5
H4' C4' O4' C1' 208.9 281.6
H4' C4' C3' O3' 25.1 336.1
H4' C4' C3' C2' 154.2 94.8
H4' C4' C3' H3' 269.2 213.5
C1' O4' C4' C3' 330.0 40.5
C1' O4' C4' H4' 208.9 281.6
C3' C2' C1' O4' 11.1 23.8
O2' C2' C1' O4' 139.0 142.6
O4' C1' C2' H2' 260.3 265.3
C2' C1' O4' N9 125.6 118.9
C2' C1' O4' H1' 243.2 241.1
N9 C1' O4' H1' 117.7 122.2
O4' C1' N9 C8 72.8 27.1
O4' C1' N9 C4 266.6 207.0
O3' C3' C4' H4' 25.1 336.1
C4' C3' O3' C2' 119.2 114.7
C4' C3' O3' H3' 242.6 237.4
C2' C3' O3' H3' 123.4 122.7
O3' C3' C2' O2' 331.4 359.9
O3' C3' C2' C1' 97.0 118.9
O3' C3' C2' H2' 210.1 237.3
C2' C3' C4' H4' 154.2 94.8
C4' C3' C2' O3' 235.5 241.3
C4' C3' C2' H3' 114.1 118.7
O4' C1' C2' C3' 11.1 23.8
O3' C3' C2' H3' 238.6 237.4
C2' C3' O3' HO3' 350.3 65.3
O2' C2' C3' C1' 234.5 241.1
O2' C2' C3' H2' 121.3 122.6
C3' C2' O2' HO2' 201.7 298.5
C1' C2' C3' H2' 246.8 241.5
C3' C2' C1' N9 133.8 142.8
C3' C2' C1' H1' 254.1 265.0
H3' C3' C4' H4' 269.2 213.5
C4' C3' H3' O3' 120.4 122.7
C4' C3' H3' C2' 250.1 245.3
O3' C3' H3' C2' 129.7 122.7
H3' C3' O3' HO3' 226.9 302.6
H3' C3' C2' O2' 92.9 122.5
H3' C3' C2' C1' 218.4 241.4
H3' C3' C2' H2' 331.6 359.9
HO3' O3' C3' C2' 350.3 65.3
HO3' O3' C3' H3' 226.9 302.6
O4' C1' C2' O2' 139.0 142.6
O2' C2' C3' H3' 92.9 122.5
C3' C2' O2' C1' 120.9 114.7
C3' C2' O2' H2' 241.3 237.4
C1' C2' O2' H2' 120.4 122.7
O2' C2' C1' N9 261.7 261.5
O2' C2' C1' H1' 22.0 23.7
O4' C1' C2' N9 237.3 241.1
O4' C1' C2' H1' 117.0 118.9
C1' C2' C3' H3' 218.4 241.4
C3' C2' C1' O2' 232.1 241.3
C3' C2' C1' H2' 110.8 118.5
O2' C2' C1' H2' 238.7 237.2
C1' C2' O2' HO2' 80.8 183.8
N9 C1' C2' H1' 239.7 237.8
C2' C1' N9 C8 313.1 271.5
C2' C1' N9 C4 146.9 91.5
H2' C2' C3' H3' 331.6 359.9
C3' C2' H2' O2' 126.1 122.6
C3' C2' H2' C1' 249.5 245.5
O2' C2' H2' C1' 123.4 122.9
H2' C2' O2' HO2' 320.5 61.1
H2' C2' C1' N9 23.0 24.3
H2' C2' C1' H1' 143.3 146.5
HO2' O2' C2' C1' 80.8 183.8
HO2' O2' C2' H2' 320.5 61.1
O4' C1' N9 C2' 119.7 115.5
O4' C1' N9 H1' 241.0 237.8
N9 C1' C2' H2' 23.0 24.3
C2' C1' N9 H1' 121.3 122.3
C8 N9 C1' C4 166.2 180.1
C1' N9 C8 N7 191.9 180.0
C1' N9 C8 H8 20.4 359.9
C1' N9 C4 C5 169.8 180.0
C1' N9 C4 N3 349.7 0.1
O4' C1' H1' C2' 245.5 244.5
O4' C1' H1' N9 120.1 122.2
H1' C1' C2' H2' 143.3 146.5
C2' C1' H1' N9 234.6 237.7
H1' C1' N9 C8 191.8 149.3
H1' C1' N9 C4 25.6 329.2
C8 N9 C1' H1' 191.8 149.3
C1' N9 C8 C4 191.8 179.9
C8 N9 C4 C5 0.1 359.9
C8 N9 C4 N3 179.9 180.0
N7 C8 N9 H8 171.5 180.1
N9 C8 N7 C5 359.7 359.9
C4 N9 C1' H1' 25.6 329.2
C1' N9 C4 C8 169.7 180.1
C4 N9 C8 N7 0.1 0.1
C4 N9 C8 H8 188.6 180.0
N7 C5 C4 N9 359.7 0.0
C6 C5 C4 N9 180.2 180.0
C5 C4 N9 N3 180.2 179.9
C2 N3 C4 N9 179.9 179.9
N7 C8 N9 C4 0.1 0.1
N9 C8 N7 H8 188.3 179.9
C8 N7 C5 C6 179.9 180.0
C8 N7 C5 C4 0.3 0.0
H8 C8 N9 C4 188.6 180.0
N9 C8 H8 N7 171.4 180.1
H8 C8 N7 C5 171.4 180.0
N9 C4 C5 N7 359.7 0.0
C5 N7 C8 H8 171.4 180.0
C6 C5 N7 C4 179.5 180.0
N7 C5 C6 O6 357.3 0.0
N7 C5 C6 N1 180.4 179.7
N7 C5 C4 N3 179.9 179.9
N9 C4 C5 C6 180.2 180.0
N7 C5 C6 C4 180.5 180.0
C6 C5 C4 N3 0.3 360.0
O6 C6 C5 N1 176.9 180.3
C5 C6 N1 C2 360.0 0.6
C5 C6 N1 HN1 179.8 180.0
N9 C4 C5 N3 179.8 180.1
N7 C5 C4 C6 179.6 180.0
C4 C5 C6 O6 176.8 180.0
C4 C5 C6 N1 359.9 359.7
C2 N3 C4 C5 359.7 0.0
O6 C6 C5 C4 176.8 180.0
C5 C6 O6 N1 183.4 179.7
O6 C6 N1 C2 182.8 180.3
O6 C6 N1 HN1 2.6 359.7
N1 C6 C5 C4 359.9 359.7
C5 C6 N1 O6 177.2 180.3
C2 N1 C6 HN1 180.2 180.6
C6 N1 C2 N2 179.9 179.7
C6 N1 C2 N3 360.0 359.4
C6 N1 C2 HN1 179.8 179.4
N2 C2 N1 N3 179.9 180.3
N1 C2 N2 HN21 119.3 179.7
N1 C2 N2 HN22 304.2 359.5
N1 C2 N3 C4 0.2 0.3
C6 N1 HN1 C2 180.1 180.6
HN1 N1 C2 N2 0.1 0.2
HN1 N1 C2 N3 180.1 180.0
N2 C2 N1 HN1 0.1 0.2
N1 C2 N2 N3 180.1 179.7
N2 C2 N3 C4 180.2 180.0
HN21 N2 C2 HN22 175.1 180.2
N9 C4 N3 C2 179.9 179.9
C5 C4 N3 C2 359.7 0.0
N3 C2 N1 HN1 180.1 180.0
N1 C2 N3 N2 179.9 180.3
N3 C2 N2 HN21 299.3 359.9
N3 C2 N2 HN22 124.2 179.8
HN21 N2 C2 N3 299.3 359.9
C2 N2 HN21 HN22 184.7 179.8
HN22 N2 C2 N3 124.2 179.8
C2 N2 HN22 HN21 175.3 180.2
N9 C4 N3 C5 180.2 179.9