PDB Chemical Component GND

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GND

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
CA	CB	1.529	1.532
CA	C	1.531	1.514
CA	N	1.491	1.493
CA	HA	1.079	1.095
CB	CG	1.520	1.534
CB	HB1	1.078	1.098
CB	HB2	1.079	1.098
CG	CD	1.517	1.528
CG	HG1	1.077	1.097
CG	HG2	1.076	1.097
CD	NE	1.483	1.443
CD	HD1	1.075	1.094
CD	HD2	1.073	1.095
NE	CZ	1.299	1.379
NE	HE	0.975	1.017
CZ	NH1	1.303	1.307
CZ	NH2	1.300	1.372
NH1	HH11	0.998	1.025
NH2	HH21	0.997	1.013
NH2	HH22	1.000	1.015
C	OXT	1.220	1.359
C	O	1.219	1.223
OXT	HXT	0.950	0.981
N	HN1	1.040	1.022
N	HN2	1.041	1.022
N	HN3	1.039	1.023

Bond Angles for GND

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
CB	CA	C	110.6	110.8
CB	CA	N	105.0	109.4
CB	CA	HA	109.9	112.3
CA	CB	CG	109.4	113.4
CA	CB	HB1	109.8	109.0
CA	CB	HB2	109.6	109.6
C	CA	N	110.2	109.5
C	CA	HA	110.6	109.1
CA	C	OXT	118.0	112.0
CA	C	O	118.0	125.0
N	CA	HA	110.4	105.5
CA	N	HN1	109.5	110.5
CA	N	HN2	109.4	110.5
CA	N	HN3	109.5	110.5
CG	CB	HB1	109.2	108.6
CG	CB	HB2	109.2	110.0
CB	CG	CD	108.7	112.5
CB	CG	HG1	109.5	110.2
CB	CG	HG2	109.6	109.0
HB1	CB	HB2	109.6	106.0
CD	CG	HG1	109.2	109.3
CD	CG	HG2	109.6	108.4
CG	CD	NE	105.8	110.7
CG	CD	HD1	110.1	109.4
CG	CD	HD2	109.7	110.8
HG1	CG	HG2	110.2	107.2
NE	CD	HD1	110.1	108.7
NE	CD	HD2	110.2	109.7
CD	NE	CZ	120.1	127.0
CD	NE	HE	119.9	115.7
HD1	CD	HD2	110.8	107.5
CZ	NE	HE	119.9	117.3
NE	CZ	NH1	119.9	121.2
NE	CZ	NH2	120.1	117.0
NH1	CZ	NH2	120.0	121.8
CZ	NH1	HH11	119.9	108.5
CZ	NH2	HH21	120.6	122.3
CZ	NH2	HH22	119.7	121.0
HH21	NH2	HH22	119.7	116.7
OXT	C	O	124.0	123.0
C	OXT	HXT	118.0	115.1
HN1	N	HN2	109.5	108.5
HN1	N	HN3	109.4	108.4
HN2	N	HN3	109.5	108.4

Torsion Angles for GND

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C	CA	CB	N	241.1	239.1
C	CA	CB	HA	122.4	122.3
CB	CA	C	OXT	4.7	295.9
CB	CA	C	O	184.6	115.9
N	CA	CB	HA	241.3	243.2
CB	CA	N	HN1	80.4	36.2
CB	CA	N	HN2	320.3	276.2
CB	CA	N	HN3	200.3	156.2
CG	CB	CA	HB1	119.8	238.9
CG	CB	CA	HB2	240.3	123.3
CA	CB	CG	CD	164.4	181.4
CA	CB	CG	HG1	45.1	303.6
CA	CB	CG	HG2	284.2	61.1
HB1	CB	CA	HB2	120.5	244.4
CB	CA	C	N	115.6	120.8
CB	CA	C	HA	238.0	235.9
C	CA	CB	CG	158.4	298.9
C	CA	CB	HB1	38.7	60.0
C	CA	CB	HB2	278.2	175.6
N	CA	C	HA	122.4	115.1
C	CA	N	HN1	199.5	157.9
C	CA	N	HN2	79.5	37.8
C	CA	N	HN3	319.5	277.9
OXT	C	CA	O	180.0	180.1
CA	C	OXT	HXT	180.0	180.0
CB	CA	N	C	240.8	238.3
CB	CA	N	HA	118.4	121.0
N	CA	CB	CG	277.3	59.8
N	CA	CB	HB1	157.5	180.9
N	CA	CB	HB2	37.0	296.5
C	CA	N	HA	237.5	242.6
N	CA	C	OXT	249.1	175.1
N	CA	C	O	69.0	355.1
HN1	N	CA	HN2	120.0	120.1
HN1	N	CA	HN3	240.1	240.0
HN2	N	CA	HN3	120.0	120.0
CB	CA	HA	C	122.4	123.3
CB	CA	HA	N	244.7	240.9
HA	CA	CB	CG	36.0	176.6
HA	CA	CB	HB1	276.3	297.7
HA	CA	CB	HB2	155.8	53.3
C	CA	HA	N	122.2	117.6
HA	CA	C	OXT	126.7	60.1
HA	CA	C	O	306.6	240.0
HA	CA	N	HN1	322.0	275.2
HA	CA	N	HN2	201.9	155.2
HA	CA	N	HN3	81.9	35.2
CG	CB	CA	C	158.4	298.9
CG	CB	CA	N	277.3	59.8
CG	CB	CA	HA	36.0	176.6
CA	CB	CG	HB1	239.9	121.3
CA	CB	CG	HB2	120.0	236.9
HB1	CB	CG	HB2	240.2	115.5
CD	CG	CB	HG1	119.3	237.8
CD	CG	CB	HG2	240.2	120.3
CB	CG	CD	NE	158.3	180.2
CB	CG	CD	HD1	39.4	300.0
CB	CG	CD	HD2	277.2	58.2
HG1	CG	CB	HG2	120.9	242.6
HB1	CB	CA	C	38.7	60.0
HB1	CB	CA	N	157.5	180.9
HB1	CB	CA	HA	276.3	297.7
CA	CB	HB1	CG	119.9	236.0
CA	CB	HB1	HB2	239.5	117.9
CG	CB	HB1	HB2	119.6	241.9
HB1	CB	CG	CD	284.6	60.1
HB1	CB	CG	HG1	165.3	182.3
HB1	CB	CG	HG2	44.3	299.7
HB2	CB	CA	C	278.2	175.6
HB2	CB	CA	N	37.0	296.5
HB2	CB	CA	HA	155.8	53.3
CA	CB	HB2	CG	240.1	125.3
CA	CB	HB2	HB1	120.6	242.5
CG	CB	HB2	HB1	240.4	117.2
HB2	CB	CG	CD	44.4	304.5
HB2	CB	CG	HG1	285.1	66.8
HB2	CB	CG	HG2	164.2	184.2
CD	CG	CB	HB1	284.6	60.1
CD	CG	CB	HB2	44.4	304.5
CB	CG	CD	HG1	240.5	122.8
CB	CG	CD	HG2	119.7	239.3
HG1	CG	CD	HG2	239.2	116.6
NE	CD	CG	HD1	118.9	240.2
NE	CD	CG	HD2	241.1	121.9
CG	CD	NE	CZ	264.0	180.2
CG	CD	NE	HE	87.7	0.3
HD1	CD	CG	HD2	122.2	241.7
HG1	CG	CB	HB1	165.3	182.3
HG1	CG	CB	HB2	285.1	66.8
CB	CG	HG1	CD	119.0	235.8
CB	CG	HG1	HG2	239.4	118.5
CD	CG	HG1	HG2	120.4	242.7
HG1	CG	CD	NE	277.7	57.4
HG1	CG	CD	HD1	158.8	177.2
HG1	CG	CD	HD2	36.7	295.5
HG2	CG	CB	HB1	44.3	299.7
HG2	CG	CB	HB2	164.2	184.2
CB	CG	HG2	CD	240.8	122.8
CB	CG	HG2	HG1	120.6	240.7
CD	CG	HG2	HG1	239.8	117.9
HG2	CG	CD	NE	38.5	300.9
HG2	CG	CD	HD1	279.6	60.6
HG2	CG	CD	HD2	157.4	178.9
NE	CD	CG	HG1	277.7	57.4
NE	CD	CG	HG2	38.5	300.9
CG	CD	NE	HD1	241.1	120.2
CG	CD	NE	HD2	118.6	237.4
HD1	CD	NE	HD2	237.5	117.2
CZ	NE	CD	HE	176.3	179.9
CD	NE	CZ	NH1	187.1	180.1
CD	NE	CZ	NH2	9.0	0.0
HD1	CD	CG	HG1	158.8	177.2
HD1	CD	CG	HG2	279.6	60.6
CG	CD	HD1	NE	116.3	239.0
CG	CD	HD1	HD2	238.4	120.3
NE	CD	HD1	HD2	122.2	241.4
HD1	CD	NE	CZ	22.9	60.0
HD1	CD	NE	HE	206.6	240.1
HD2	CD	CG	HG1	36.7	295.5
HD2	CD	CG	HG2	157.4	178.9
CG	CD	HD2	NE	243.8	122.6
CG	CD	HD2	HD1	121.7	240.6
NE	CD	HD2	HD1	237.9	118.0
HD2	CD	NE	CZ	145.4	302.8
HD2	CD	NE	HE	329.1	122.9
CZ	NE	CD	HD1	22.9	60.0
CZ	NE	CD	HD2	145.4	302.8
CD	NE	CZ	HE	183.7	180.1
NH1	CZ	NE	NH2	178.1	180.1
NE	CZ	NH1	HH11	0.4	359.9
NE	CZ	NH2	HH21	0.8	0.2
NE	CZ	NH2	HH22	180.8	180.0
HE	NE	CD	HD1	206.6	240.1
HE	NE	CD	HD2	329.1	122.9
CD	NE	HE	CZ	176.3	179.9
HE	NE	CZ	NH1	3.4	0.0
HE	NE	CZ	NH2	185.2	179.9
NH1	CZ	NE	HE	3.4	0.0
NE	CZ	NH1	NH2	181.9	179.9
NH1	CZ	NH2	HH21	182.6	180.1
NH1	CZ	NH2	HH22	2.7	359.9
NH2	CZ	NE	HE	185.2	179.9
NE	CZ	NH2	NH1	178.1	180.1
NH2	CZ	NH1	HH11	178.5	180.0
HH21	NH2	CZ	HH22	180.0	180.2
HH11	NH1	CZ	NH2	178.5	180.0
CZ	NH2	HH21	HH22	180.0	179.8
CZ	NH2	HH22	HH21	180.0	180.2
OXT	C	CA	N	249.1	175.1
OXT	C	CA	HA	126.7	60.1
CA	C	OXT	O	180.0	179.9
O	C	CA	N	69.0	355.1
O	C	CA	HA	306.6	240.0
CA	C	O	OXT	180.0	180.1
O	C	OXT	HXT	0.1	0.1
HXT	OXT	C	O	0.1	0.1
HN1	N	CA	HA	322.0	275.2
CA	N	HN1	HN2	240.0	238.8
CA	N	HN1	HN3	120.0	121.2
HN2	N	HN1	HN3	240.0	242.4
HN2	N	CA	HA	201.9	155.2
CA	N	HN2	HN1	120.1	121.3
CA	N	HN2	HN3	240.0	238.8
HN1	N	HN2	HN3	119.9	117.5
HN3	N	CA	HA	81.9	35.2
CA	N	HN3	HN1	240.0	238.8
CA	N	HN3	HN2	120.0	121.2
HN1	N	HN3	HN2	240.0	242.4