PDB Chemical Component GNC
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for GNC
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
N |
1.474 |
1.470 |
| NE2 |
CD |
1.436 |
1.348 |
| OE1 |
CD |
1.229 |
1.212 |
| O |
C |
1.239 |
1.209 |
| CG |
CB |
1.528 |
1.530 |
| CG |
CD |
1.492 |
1.507 |
| CB |
CA |
1.512 |
1.530 |
| C |
CA |
1.519 |
1.507 |
| C |
OXT |
1.477 |
1.342 |
| CA |
N |
1.479 |
1.468 |
| C1 |
HC1 |
1.100 |
1.090 |
| C1 |
HC2 |
1.100 |
1.090 |
| C1 |
HC3 |
1.100 |
1.090 |
| NE2 |
HE21 |
1.000 |
0.970 |
| NE2 |
HE22 |
1.000 |
0.970 |
| CG |
HG2 |
1.100 |
1.090 |
| CG |
HG3 |
1.100 |
1.090 |
| CB |
HB2 |
1.100 |
1.090 |
| CB |
HB3 |
1.100 |
1.090 |
| CA |
HA |
1.100 |
1.090 |
| OXT |
HXT |
0.950 |
0.967 |
| N |
H |
1.000 |
1.009 |
Bond Angles for GNC
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1 |
N |
CA |
118.8 |
111.0 |
| N |
C1 |
HC1 |
109.5 |
109.5 |
| N |
C1 |
HC2 |
109.5 |
109.5 |
| N |
C1 |
HC3 |
109.5 |
109.4 |
| C1 |
N |
H |
107.1 |
110.9 |
| NE2 |
CD |
OE1 |
121.1 |
120.0 |
| NE2 |
CD |
CG |
120.2 |
120.0 |
| CD |
NE2 |
HE21 |
120.0 |
120.0 |
| CD |
NE2 |
HE22 |
120.0 |
120.0 |
| OE1 |
CD |
CG |
118.7 |
120.0 |
| O |
C |
CA |
122.6 |
120.0 |
| O |
C |
OXT |
121.7 |
120.0 |
| CB |
CG |
CD |
113.6 |
109.5 |
| CG |
CB |
CA |
118.2 |
109.5 |
| CB |
CG |
HG2 |
108.4 |
109.5 |
| CB |
CG |
HG3 |
108.4 |
109.4 |
| CG |
CB |
HB2 |
107.3 |
109.4 |
| CG |
CB |
HB3 |
107.3 |
109.5 |
| CD |
CG |
HG2 |
108.4 |
109.5 |
| CD |
CG |
HG3 |
108.4 |
109.4 |
| CB |
CA |
C |
112.0 |
109.5 |
| CB |
CA |
N |
113.8 |
109.5 |
| CA |
CB |
HB2 |
107.2 |
109.5 |
| CA |
CB |
HB3 |
107.2 |
109.5 |
| CB |
CA |
HA |
107.6 |
109.5 |
| CA |
C |
OXT |
115.8 |
120.0 |
| C |
CA |
N |
107.7 |
109.5 |
| C |
CA |
HA |
107.5 |
109.5 |
| C |
OXT |
HXT |
109.5 |
117.0 |
| N |
CA |
HA |
108.0 |
109.5 |
| CA |
N |
H |
107.1 |
111.0 |
| HC1 |
C1 |
HC2 |
109.5 |
109.5 |
| HC1 |
C1 |
HC3 |
109.5 |
109.5 |
| HC2 |
C1 |
HC3 |
109.5 |
109.5 |
| HE21 |
NE2 |
HE22 |
120.0 |
120.1 |
| HG2 |
CG |
HG3 |
109.5 |
109.5 |
| HB2 |
CB |
HB3 |
109.5 |
109.5 |
Torsion Angles for GNC
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CB |
CA |
N |
C1 |
275.3 |
155.0 |
| C |
CA |
N |
C1 |
40.0 |
275.0 |
| C1 |
N |
CA |
HA |
155.9 |
35.0 |
| CA |
N |
C1 |
H |
238.7 |
236.0 |
| HC1 |
C1 |
N |
HC2 |
240.0 |
240.0 |
| HC1 |
C1 |
N |
HC3 |
120.0 |
120.0 |
| HC2 |
C1 |
N |
HC3 |
240.0 |
240.0 |
| OE1 |
CD |
NE2 |
CG |
181.0 |
180.0 |
| CB |
CG |
CD |
NE2 |
260.5 |
180.0 |
| NE2 |
CD |
CG |
HG2 |
139.9 |
60.0 |
| NE2 |
CD |
CG |
HG3 |
21.2 |
300.0 |
| HE21 |
NE2 |
CD |
HE22 |
180.0 |
180.1 |
| NE2 |
CD |
OE1 |
CG |
179.1 |
180.0 |
| OE1 |
CD |
NE2 |
HE21 |
0.0 |
0.0 |
| OE1 |
CD |
NE2 |
HE22 |
180.0 |
179.9 |
| CB |
CG |
CD |
OE1 |
79.6 |
0.1 |
| OE1 |
CD |
CG |
HG2 |
319.0 |
240.0 |
| OE1 |
CD |
CG |
HG3 |
200.2 |
120.0 |
| CB |
CA |
C |
O |
18.4 |
120.0 |
| CA |
C |
O |
OXT |
181.4 |
180.0 |
| O |
C |
CA |
N |
252.6 |
360.0 |
| O |
C |
CA |
HA |
136.4 |
240.0 |
| O |
C |
OXT |
HXT |
0.0 |
360.0 |
| NE2 |
CD |
CG |
CB |
260.5 |
180.0 |
| OE1 |
CD |
CG |
CB |
79.6 |
0.1 |
| CD |
CG |
CB |
HG2 |
239.4 |
240.0 |
| CD |
CG |
CB |
HG3 |
120.6 |
119.9 |
| CG |
CB |
CA |
C |
178.2 |
175.0 |
| CG |
CB |
CA |
N |
300.6 |
295.0 |
| CA |
CB |
CG |
HB2 |
238.8 |
240.0 |
| CA |
CB |
CG |
HB3 |
121.2 |
120.0 |
| CG |
CB |
CA |
HA |
60.2 |
55.0 |
| HG2 |
CG |
CB |
HG3 |
241.2 |
240.0 |
| HB2 |
CB |
CG |
HB3 |
242.5 |
240.0 |
| NE2 |
CD |
CG |
OE1 |
180.9 |
180.0 |
| CG |
CD |
NE2 |
HE21 |
179.0 |
180.1 |
| CG |
CD |
NE2 |
HE22 |
359.0 |
360.0 |
| CD |
CG |
CB |
CA |
174.7 |
180.0 |
| CB |
CG |
CD |
HG2 |
120.6 |
120.0 |
| CB |
CG |
CD |
HG3 |
239.4 |
240.1 |
| CD |
CG |
CB |
HB2 |
295.9 |
299.9 |
| CD |
CG |
CB |
HB3 |
53.5 |
60.0 |
| HG2 |
CG |
CD |
HG3 |
118.8 |
120.0 |
| C1 |
N |
CA |
CB |
275.3 |
155.0 |
| O |
C |
CA |
CB |
18.4 |
120.0 |
| CA |
CB |
CG |
CD |
174.7 |
180.0 |
| CA |
CB |
CG |
HG2 |
295.3 |
300.0 |
| CA |
CB |
CG |
HG3 |
54.1 |
60.0 |
| CG |
CB |
CA |
HB2 |
121.2 |
120.0 |
| CG |
CB |
CA |
HB3 |
238.8 |
240.0 |
| CB |
CA |
C |
OXT |
199.7 |
300.0 |
| C |
CA |
CB |
N |
237.5 |
240.0 |
| C |
CA |
CB |
HA |
118.0 |
120.0 |
| N |
CA |
CB |
HA |
240.4 |
240.0 |
| CB |
CA |
N |
H |
153.9 |
31.1 |
| HB2 |
CB |
CA |
HB3 |
117.5 |
120.0 |
| C1 |
N |
CA |
C |
40.0 |
275.0 |
| O |
C |
CA |
OXT |
178.7 |
180.0 |
| CB |
CA |
C |
N |
125.8 |
120.0 |
| C |
CA |
CB |
HB2 |
56.9 |
55.0 |
| C |
CA |
CB |
HB3 |
299.4 |
295.0 |
| CB |
CA |
C |
HA |
242.0 |
240.0 |
| CA |
C |
OXT |
HXT |
178.7 |
180.0 |
| N |
CA |
C |
HA |
116.2 |
120.0 |
| C |
CA |
N |
H |
278.7 |
151.1 |
| O |
C |
OXT |
CA |
181.3 |
180.0 |
| OXT |
C |
CA |
N |
73.8 |
180.0 |
| OXT |
C |
CA |
HA |
317.7 |
60.0 |
| CA |
N |
C1 |
HC1 |
180.0 |
180.0 |
| CA |
N |
C1 |
HC2 |
300.0 |
300.0 |
| CA |
N |
C1 |
HC3 |
60.0 |
60.0 |
| C1 |
N |
CA |
H |
121.4 |
123.9 |
| CB |
CA |
N |
C |
235.3 |
240.0 |
| N |
CA |
CB |
HB2 |
179.4 |
175.0 |
| N |
CA |
CB |
HB3 |
61.9 |
55.0 |
| CB |
CA |
N |
HA |
119.4 |
120.0 |
| N |
CA |
C |
OXT |
73.8 |
180.0 |
| C |
CA |
N |
HA |
244.1 |
240.0 |
| HC1 |
C1 |
N |
CA |
180.0 |
180.0 |
| N |
C1 |
HC1 |
HC2 |
120.0 |
120.0 |
| N |
C1 |
HC1 |
HC3 |
240.0 |
240.1 |
| HC1 |
C1 |
N |
H |
301.3 |
304.0 |
| HC2 |
C1 |
HC1 |
HC3 |
120.0 |
120.1 |
| HC2 |
C1 |
N |
CA |
300.0 |
300.0 |
| N |
C1 |
HC2 |
HC1 |
240.0 |
240.0 |
| N |
C1 |
HC2 |
HC3 |
120.0 |
119.9 |
| HC2 |
C1 |
N |
H |
61.3 |
64.0 |
| HC1 |
C1 |
HC2 |
HC3 |
240.0 |
239.9 |
| HC3 |
C1 |
N |
CA |
60.0 |
60.0 |
| N |
C1 |
HC3 |
HC1 |
120.0 |
120.0 |
| N |
C1 |
HC3 |
HC2 |
240.0 |
240.0 |
| HC3 |
C1 |
N |
H |
181.3 |
184.0 |
| HC1 |
C1 |
HC3 |
HC2 |
120.0 |
120.0 |
| HE21 |
NE2 |
CD |
OE1 |
0.0 |
0.0 |
| HE21 |
NE2 |
CD |
CG |
179.0 |
180.1 |
| CD |
NE2 |
HE21 |
HE22 |
180.0 |
179.9 |
| HE22 |
NE2 |
CD |
OE1 |
180.0 |
179.9 |
| HE22 |
NE2 |
CD |
CG |
359.0 |
360.0 |
| CD |
NE2 |
HE22 |
HE21 |
180.0 |
180.1 |
| CB |
CG |
HG2 |
CD |
236.2 |
240.0 |
| HG2 |
CG |
CB |
CA |
295.3 |
300.0 |
| CB |
CG |
HG2 |
HG3 |
118.1 |
120.0 |
| HG2 |
CG |
CB |
HB2 |
56.6 |
60.0 |
| HG2 |
CG |
CB |
HB3 |
174.1 |
180.0 |
| CD |
CG |
HG2 |
HG3 |
241.9 |
240.0 |
| CB |
CG |
HG3 |
CD |
123.8 |
120.0 |
| HG3 |
CG |
CB |
CA |
54.1 |
60.0 |
| CB |
CG |
HG3 |
HG2 |
241.9 |
240.0 |
| HG3 |
CG |
CB |
HB2 |
175.3 |
180.0 |
| HG3 |
CG |
CB |
HB3 |
292.9 |
300.0 |
| CD |
CG |
HG3 |
HG2 |
118.1 |
120.0 |
| HB2 |
CB |
CG |
CD |
295.9 |
299.9 |
| CG |
CB |
HB2 |
CA |
232.1 |
240.0 |
| HB2 |
CB |
CG |
HG2 |
56.6 |
60.0 |
| HB2 |
CB |
CG |
HG3 |
175.3 |
180.0 |
| CG |
CB |
HB2 |
HB3 |
116.1 |
120.0 |
| HB2 |
CB |
CA |
C |
56.9 |
55.0 |
| HB2 |
CB |
CA |
N |
179.4 |
175.0 |
| CA |
CB |
HB2 |
HB3 |
244.0 |
240.0 |
| HB2 |
CB |
CA |
HA |
299.0 |
295.0 |
| HB3 |
CB |
CG |
CD |
53.5 |
60.0 |
| CG |
CB |
HB3 |
CA |
127.9 |
120.0 |
| HB3 |
CB |
CG |
HG2 |
174.1 |
180.0 |
| HB3 |
CB |
CG |
HG3 |
292.9 |
300.0 |
| CG |
CB |
HB3 |
HB2 |
243.9 |
240.0 |
| HB3 |
CB |
CA |
C |
299.4 |
295.0 |
| HB3 |
CB |
CA |
N |
61.9 |
55.0 |
| CA |
CB |
HB3 |
HB2 |
116.0 |
120.0 |
| HB3 |
CB |
CA |
HA |
181.5 |
175.0 |
| CB |
CA |
HA |
C |
120.8 |
120.0 |
| CB |
CA |
HA |
N |
236.8 |
240.0 |
| HA |
CA |
CB |
HB2 |
299.0 |
295.0 |
| HA |
CA |
CB |
HB3 |
181.5 |
175.0 |
| HA |
CA |
C |
OXT |
317.7 |
60.0 |
| C |
CA |
HA |
N |
116.0 |
120.0 |
| HA |
CA |
N |
H |
34.5 |
271.1 |
| C1 |
N |
H |
CA |
231.5 |
236.1 |
| H |
N |
C1 |
HC1 |
301.3 |
304.0 |
| H |
N |
C1 |
HC2 |
61.3 |
64.0 |
| H |
N |
C1 |
HC3 |
181.3 |
184.0 |
| H |
N |
CA |
HA |
34.5 |
271.1 |