PDB Chemical Component GN7

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GN7

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.482 1.480
P OP2 1.479 1.610
P OP3 1.643 1.609
P O5' 1.624 1.609
OP2 HOP2 0.949 0.966
OP3 HOP3 0.949 0.966
O5' C5' 1.442 1.428
C5' C4' 1.541 1.530
C5' H5' 1.090 1.090
C5' H5'' 1.090 1.089
C4' O4' 1.439 1.447
C4' C3' 1.530 1.549
C4' H4' 1.090 1.090
O4' C1' 1.444 1.437
C3' O3' 1.444 1.429
C3' C2' 1.523 1.547
C3' H3' 1.090 1.090
O3' HO3' 0.950 0.968
C2' C1' 1.521 1.540
C2' H2' 1.091 1.090
C2' H2'' 1.090 1.090
C1' N7 1.476 1.464
C1' H1' 1.090 1.090
N9 C8 1.297 1.306
N9 C4 1.394 1.344
C8 N7 1.363 1.349
C8 H8 1.090 1.080
N7 C5 1.379 1.381
C5 C6 1.430 1.404
C5 C4 1.376 1.398
C6 O6 1.228 1.219
C6 N1 1.393 1.352
N1 C2 1.377 1.363
N1 HN1 1.018 0.971
C2 N2 1.314 1.373
C2 N3 1.332 1.311
N2 HN21 1.009 0.970
N2 HN22 1.009 0.970
N3 C4 1.347 1.347

Bond Angles for GN7

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 119.5 109.4
OP1 P OP3 108.5 109.5
OP1 P O5' 107.9 109.5
OP2 P OP3 107.9 109.4
OP2 P O5' 107.9 109.5
P OP2 HOP2 119.5 106.9
OP3 P O5' 104.1 109.5
P OP3 HOP3 108.5 106.8
P O5' C5' 124.8 106.8
O5' C5' C4' 110.8 109.5
O5' C5' H5' 110.6 109.4
O5' C5' H5'' 108.9 109.6
C4' C5' H5' 109.3 109.4
C4' C5' H5'' 108.9 109.4
C5' C4' O4' 111.9 110.8
C5' C4' C3' 116.2 110.7
C5' C4' H4' 107.2 110.6
H5' C5' H5'' 108.3 109.5
O4' C4' C3' 104.1 103.6
O4' C4' H4' 108.5 110.5
C4' O4' C1' 110.6 106.8
C3' C4' H4' 108.8 110.6
C4' C3' O3' 106.2 110.9
C4' C3' C2' 99.2 102.1
C4' C3' H3' 111.7 110.9
O4' C1' C2' 103.4 107.4
O4' C1' N7 107.2 109.9
O4' C1' H1' 110.1 109.9
O3' C3' C2' 111.6 110.9
O3' C3' H3' 112.3 110.8
C3' O3' HO3' 106.2 106.8
C2' C3' H3' 114.8 111.0
C3' C2' C1' 101.9 104.2
C3' C2' H2' 108.5 110.5
C3' C2' H2'' 114.3 110.5
C1' C2' H2' 109.9 110.5
C1' C2' H2'' 112.4 110.5
C2' C1' N7 116.9 109.9
C2' C1' H1' 108.8 109.8
H2' C2' H2'' 109.6 110.5
N7 C1' H1' 110.1 109.9
C1' N7 C8 128.2 126.4
C1' N7 C5 128.0 126.5
C8 N9 C4 102.7 109.9
N9 C8 N7 116.3 110.0
N9 C8 H8 122.0 125.0
N9 C4 C5 110.3 106.9
N9 C4 N3 122.8 133.9
N7 C8 H8 121.7 125.0
C8 N7 C5 103.8 107.1
N7 C5 C6 132.2 134.7
N7 C5 C4 106.9 106.2
C6 C5 C4 120.9 119.1
C5 C6 O6 128.5 120.8
C5 C6 N1 111.0 118.4
C5 C4 N3 126.9 119.3
O6 C6 N1 120.5 120.8
C6 N1 C2 123.8 120.3
C6 N1 HN1 119.1 119.8
C2 N1 HN1 117.1 119.9
N1 C2 N2 115.3 119.0
N1 C2 N3 125.3 122.0
N2 C2 N3 119.4 119.0
C2 N2 HN21 117.0 120.0
C2 N2 HN22 121.8 120.0
C2 N3 C4 112.1 121.0
HN21 N2 HN22 121.2 120.0

Torsion Angles for GN7

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 OP3 235.8 119.9
OP2 P OP1 O5' 123.6 240.0
OP1 P OP2 HOP2 180.0 300.0
OP3 P OP1 O5' 247.7 120.1
OP1 P OP3 HOP3 179.9 180.0
OP1 P O5' C5' 77.0 60.0
OP1 P OP2 OP3 124.5 240.1
OP1 P OP2 O5' 236.4 120.0
OP3 P OP2 O5' 111.9 240.0
OP2 P OP3 HOP3 310.8 60.1
OP2 P O5' C5' 306.6 179.9
OP1 P OP3 OP2 229.2 119.9
OP1 P OP3 O5' 114.7 239.9
OP2 P OP3 O5' 245.6 120.0
OP3 P OP2 HOP2 55.6 59.9
OP3 P O5' C5' 192.1 299.9
OP1 P O5' OP2 130.4 240.0
OP1 P O5' OP3 244.8 120.0
OP2 P O5' OP3 114.4 240.0
O5' P OP2 HOP2 303.6 180.0
O5' P OP3 HOP3 65.2 300.1
P O5' C5' C4' 132.8 180.0
P O5' C5' H5' 11.4 60.1
P O5' C5' H5'' 252.5 300.0
HOP2 OP2 P OP3 55.6 59.9
HOP2 OP2 P O5' 303.6 180.0
HOP3 OP3 P O5' 65.2 300.1
C4' C5' O5' H5' 121.4 119.9
C4' C5' O5' H5'' 240.3 240.0
O5' C5' C4' O4' 59.3 65.7
O5' C5' C4' C3' 178.6 180.0
O5' C5' C4' H4' 300.5 303.0
H5' C5' O5' H5'' 118.9 120.1
O5' C5' C4' H5' 237.8 240.1
O5' C5' C4' H5'' 119.7 120.1
H5' C5' C4' H5'' 241.9 240.0
O4' C4' C5' C3' 240.7 245.7
O4' C4' C5' H4' 118.8 122.8
C5' C4' O4' C1' 108.9 158.5
C3' C4' C5' H4' 238.1 237.1
C5' C4' C3' O3' 158.9 86.1
C5' C4' C3' C2' 274.7 204.3
C5' C4' C3' H3' 36.2 322.6
O5' C5' H5' C4' 122.3 120.0
O5' C5' H5' H5'' 240.8 239.9
C4' C5' H5' H5'' 118.5 119.9
H5' C5' C4' O4' 181.5 185.7
H5' C5' C4' C3' 300.8 300.0
H5' C5' C4' H4' 62.7 62.9
O5' C5' H5'' C4' 239.1 239.9
O5' C5' H5'' H5' 120.3 120.0
C4' C5' H5'' H5' 241.2 240.1
H5'' C5' C4' O4' 299.6 305.6
H5'' C5' C4' C3' 58.9 59.9
H5'' C5' C4' H4' 180.8 182.9
O4' C4' C5' H5' 181.5 185.7
O4' C4' C5' H5'' 299.6 305.6
C5' C4' O4' C3' 126.2 118.7
C5' C4' O4' H4' 241.9 237.2
C3' C4' O4' H4' 115.7 118.5
O4' C4' C3' O3' 282.3 204.8
O4' C4' C3' C2' 38.2 323.1
O4' C4' C3' H3' 159.6 81.3
C4' O4' C1' C2' 348.7 333.7
C4' O4' C1' N7 224.7 214.2
C4' O4' C1' H1' 104.9 93.2
C3' C4' C5' H5' 300.8 300.0
C3' C4' C5' H5'' 58.9 59.9
C5' C4' C3' O4' 236.5 241.3
C5' C4' C3' H4' 121.0 122.9
O4' C4' C3' H4' 244.5 241.7
C3' C4' O4' C1' 342.7 39.8
O3' C3' C4' C2' 244.2 241.8
O3' C3' C4' H3' 122.7 123.5
C4' C3' O3' HO3' 180.0 174.3
C2' C3' C4' H3' 238.5 241.8
C4' C3' C2' C1' 315.4 20.9
C4' C3' C2' H2' 71.2 262.2
C4' C3' C2' H2'' 193.9 139.6
H4' C4' C5' H5' 62.7 62.9
H4' C4' C5' H5'' 180.8 182.9
C5' C4' H4' O4' 121.0 122.9
C5' C4' H4' C3' 233.6 237.0
O4' C4' H4' C3' 112.6 114.1
H4' C4' O4' C1' 226.9 281.4
H4' C4' C3' O3' 37.8 323.2
H4' C4' C3' C2' 153.7 81.4
H4' C4' C3' H3' 275.1 199.7
C1' O4' C4' C3' 342.7 39.8
C1' O4' C4' H4' 226.9 281.4
C3' C2' C1' O4' 35.4 1.9
O4' C1' C2' H2' 280.5 120.6
O4' C1' C2' H2'' 158.2 243.3
C2' C1' O4' N7 124.1 119.5
C2' C1' O4' H1' 243.9 240.5
N7 C1' O4' H1' 119.8 121.0
O4' C1' N7 C8 41.3 28.3
O4' C1' N7 C5 224.6 208.2
O3' C3' C4' H4' 37.8 323.2
C4' C3' O3' C2' 107.1 112.7
C4' C3' O3' H3' 237.7 236.4
C2' C3' O3' H3' 130.6 123.7
O3' C3' C2' C1' 66.9 139.1
O3' C3' C2' H2' 182.8 20.4
O3' C3' C2' H2'' 305.4 257.8
C2' C3' C4' H4' 153.7 81.4
C4' C3' C2' O3' 248.4 241.8
C4' C3' C2' H3' 119.2 118.2
O4' C1' C2' C3' 35.4 1.9
O3' C3' C2' H3' 230.7 236.4
C2' C3' O3' HO3' 72.9 61.5
C1' C2' C3' H2' 244.1 118.7
C1' C2' C3' H2'' 121.5 241.3
C3' C2' C1' N7 152.8 121.5
C3' C2' C1' H1' 278.3 242.5
H2' C2' C3' H2'' 237.4 122.6
H3' C3' C4' H4' 275.1 199.7
C4' C3' H3' O3' 119.2 123.6
C4' C3' H3' C2' 248.1 247.3
O3' C3' H3' C2' 129.0 123.7
H3' C3' O3' HO3' 302.3 297.8
H3' C3' C2' C1' 196.2 262.7
H3' C3' C2' H2' 312.1 144.0
H3' C3' C2' H2'' 74.7 21.4
HO3' O3' C3' C2' 72.9 61.5
HO3' O3' C3' H3' 302.3 297.8
O4' C1' C2' N7 242.5 240.5
O4' C1' C2' H1' 117.0 119.5
C1' C2' C3' H3' 196.2 262.7
C3' C2' C1' H2' 114.8 241.3
C3' C2' C1' H2'' 237.2 118.7
H2' C2' C1' H2'' 122.3 237.4
N7 C1' C2' H1' 234.5 239.0
C2' C1' N7 C8 285.9 270.2
C2' C1' N7 C5 109.2 90.2
H2' C2' C3' H3' 312.1 144.0
C3' C2' H2' C1' 249.4 114.8
C3' C2' H2' H2'' 125.4 237.4
C1' C2' H2' H2'' 236.0 122.6
H2' C2' C1' N7 38.0 240.2
H2' C2' C1' H1' 163.5 1.2
H2'' C2' C3' H3' 74.7 21.4
C3' C2' H2'' C1' 115.5 245.2
C3' C2' H2'' H2' 238.0 122.6
C1' C2' H2'' H2' 122.5 237.4
H2'' C2' C1' N7 275.6 2.8
H2'' C2' C1' H1' 41.2 123.8
O4' C1' N7 C2' 115.4 118.0
O4' C1' N7 H1' 240.3 239.0
N7 C1' C2' H2' 38.0 240.2
N7 C1' C2' H2'' 275.6 2.8
C2' C1' N7 H1' 124.9 121.0
N9 C8 N7 C1' 182.9 180.0
C1' N7 C8 H8 2.8 0.0
C8 N7 C1' C5 176.7 180.0
C1' N7 C5 C6 357.2 0.1
C1' N7 C5 C4 177.1 180.0
O4' C1' H1' C2' 247.3 242.0
O4' C1' H1' N7 118.0 121.0
H1' C1' C2' H2' 163.5 1.2
H1' C1' C2' H2'' 41.2 123.8
C2' C1' H1' N7 230.6 239.0
H1' C1' N7 C8 161.0 149.3
H1' C1' N7 C5 344.3 329.2
C1' N7 C8 N9 182.9 180.0
C8 N9 C4 C5 360.0 360.0
C8 N9 C4 N3 179.9 180.0
N7 C8 N9 H8 179.9 180.0
N9 C8 N7 C5 0.2 0.0
C4 N9 C8 N7 359.9 360.0
C4 N9 C8 H8 179.9 180.0
N7 C5 C4 N9 0.1 0.0
C6 C5 C4 N9 180.1 179.9
C5 C4 N9 N3 180.1 180.0
C2 N3 C4 N9 180.0 180.0
C8 N7 C1' H1' 161.0 149.3
C1' N7 C8 C5 182.7 180.0
N7 C8 N9 C4 359.9 360.0
N9 C8 N7 H8 180.1 180.0
C8 N7 C5 C6 179.9 180.1
C8 N7 C5 C4 359.8 360.0
H8 C8 N9 C4 179.9 180.0
N9 C8 H8 N7 179.9 180.0
H8 C8 N7 C5 180.1 180.0
C5 N7 C1' H1' 344.3 329.2
C1' N7 C5 C8 177.3 180.0
N9 C4 C5 N7 0.1 0.0
C5 N7 C8 H8 180.1 180.0
C6 C5 N7 C4 180.1 180.1
N7 C5 C6 O6 359.4 359.9
N7 C5 C6 N1 179.8 179.7
N7 C5 C4 N3 180.2 180.1
N9 C4 C5 C6 180.1 179.9
N7 C5 C6 C4 179.9 179.9
C6 C5 C4 N3 0.1 359.9
O6 C6 C5 N1 179.6 180.2
C5 C6 N1 C2 0.0 0.4
C5 C6 N1 HN1 179.6 179.9
N9 C4 C5 N3 179.9 180.0
N7 C5 C4 C6 180.1 180.1
C4 C5 C6 O6 179.5 180.0
C4 C5 C6 N1 359.9 359.9
C2 N3 C4 C5 359.9 360.0
O6 C6 C5 C4 179.5 180.0
C5 C6 O6 N1 180.4 179.8
O6 C6 N1 C2 180.4 180.3
O6 C6 N1 HN1 360.0 359.8
N1 C6 C5 C4 359.9 359.9
C5 C6 N1 O6 179.6 180.2
C2 N1 C6 HN1 180.4 180.5
C6 N1 C2 N2 179.5 179.8
C6 N1 C2 N3 0.0 359.4
C6 N1 C2 HN1 179.6 179.5
N2 C2 N1 N3 179.5 180.3
N1 C2 N2 HN21 0.9 179.7
N1 C2 N2 HN22 181.3 359.4
N1 C2 N3 C4 0.0 0.3
C6 N1 HN1 C2 180.4 180.5
HN1 N1 C2 N2 359.9 0.3
HN1 N1 C2 N3 180.4 180.0
N2 C2 N1 HN1 359.9 0.3
N1 C2 N2 N3 180.5 179.7
N2 C2 N3 C4 180.6 180.0
HN21 N2 C2 HN22 179.6 180.3
N9 C4 N3 C2 180.0 180.0
C5 C4 N3 C2 359.9 360.0
N3 C2 N1 HN1 180.4 180.0
N1 C2 N3 N2 179.4 180.3
N3 C2 N2 HN21 180.4 0.0
N3 C2 N2 HN22 0.8 179.7
HN21 N2 C2 N3 180.4 0.0
C2 N2 HN21 HN22 180.4 179.7
HN22 N2 C2 N3 0.8 179.7
C2 N2 HN22 HN21 179.6 180.3
N9 C4 N3 C5 180.1 180.0