PDB Chemical Component GMU

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GMU

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
OP3 P 1.473 1.617
OP3 H3P 0.950 0.980
P OP2 1.492 1.618
P O5' 1.608 1.619
P OP1   1.501
OP2 H2P 0.950 0.980
O5' C5' 1.415 1.416
C5' C4' 1.506 1.523
C5' H5' 1.115 1.092
C5' H5'' 1.115 1.091
C4' O4' 1.447 1.444
C4' C3' 1.514 1.523
C4' H4' 1.115 1.095
O4' C1' 1.426 1.437
C3' O3' 1.457 1.427
C3' C2' 1.509 1.514
C3' H1 1.115 1.093
O3' H3' 0.949 0.969
C2' C1' 1.517 1.519
C2' O2' 1.423 1.413
C2' H2' 1.115 1.097
C1' N1 1.469 1.435
C1' H1' 1.116 1.094
N1 C2 1.402 1.413
N1 C6 1.371 1.390
C2 O2 1.224 1.232
C2 N3 1.364 1.400
N3 C4 1.364 1.386
N3 HN3 1.019 1.017
C6 C5 1.344 1.339
C6 H6 1.103 1.086
C5 C5M 1.484 1.495
C5 C4 1.462 1.487
C5M H71 1.115 1.089
C5M H72 1.115 1.089
C5M H73 1.115 1.090
C4 O4 1.214 1.229
O2' CA' 1.413 1.424
CA' CB' 1.523 1.517
CA' HA'1 1.115 1.095
CA' HA'2 1.115 1.095
CB' NC' 1.483 1.481
CB' HB'1 1.115 1.095
CB' HB'2 1.115 1.094
NC' CD' 1.357 1.456
NC' HC' 1.020 1.013
CD' NE' 1.351 1.460
CD' NF' 1.336 1.460
CD' HD' 1.115 1.096
NE' HE'1 1.020 1.018
NE' HE'2 1.020 1.019
NF' HF'1 1.020 1.018
NF' HF'2 1.020 1.019

Bond Angles for GMU

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
P OP3 H3P 118.8 119.0
OP3 P OP2 118.8 103.3
OP3 P O5' 111.7 103.8
OP3 P OP1   115.3
OP2 P O5' 104.0 102.9
OP2 P OP1   114.9
P OP2 H2P 118.8 119.0
O5' P OP1   115.0
P O5' C5' 119.4 118.5
O5' C5' C4' 109.7 108.6
O5' C5' H5' 112.1 109.2
O5' C5' H5'' 112.1 109.3
C4' C5' H5' 112.2 110.1
C4' C5' H5'' 112.1 110.1
C5' C4' O4' 111.7 108.2
C5' C4' C3' 114.5 113.3
C5' C4' H4' 102.5 109.3
H5' C5' H5'' 98.3 109.6
O4' C4' C3' 102.6 105.9
O4' C4' H4' 114.4 107.7
C4' O4' C1' 109.0 109.2
C3' C4' H4' 111.5 112.2
C4' C3' O3' 110.5 107.9
C4' C3' C2' 100.4 102.1
C4' C3' H1 116.6 114.5
O4' C1' C2' 106.0 106.5
O4' C1' N1 109.5 109.0
O4' C1' H1' 113.0 108.9
O3' C3' C2' 114.8 110.3
O3' C3' H1 102.7 107.8
C3' O3' H3' 110.4 106.4
C2' C3' H1 112.4 114.0
C3' C2' C1' 99.8 102.0
C3' C2' O2' 108.3 112.3
C3' C2' H2' 117.1 110.1
C1' C2' O2' 112.1 112.6
C1' C2' H2' 113.7 111.1
C2' C1' N1 113.0 112.5
C2' C1' H1' 109.4 112.6
O2' C2' H2' 105.9 108.6
C2' O2' CA' 114.2 111.9
N1 C1' H1' 106.0 107.3
C1' N1 C2 117.5 121.3
C1' N1 C6 123.4 118.5
C2 N1 C6 119.2 120.2
N1 C2 O2 121.0 123.8
N1 C2 N3 115.9 115.1
N1 C6 C5 125.0 124.5
N1 C6 H6 118.6 114.7
O2 C2 N3 123.1 121.1
C2 N3 C4 127.1 127.0
C2 N3 HN3 116.5 116.4
C4 N3 HN3 116.5 116.6
N3 C4 C5 115.6 114.8
N3 C4 O4 120.5 123.6
C5 C6 H6 116.4 120.7
C6 C5 C5M 123.5 123.6
C6 C5 C4 117.2 118.4
C5M C5 C4 119.3 118.0
C5 C5M H71 107.2 109.7
C5 C5M H72 123.5 109.8
C5 C5M H73 107.2 109.7
C5 C4 O4 123.8 121.6
H71 C5M H72 107.2 109.4
H71 C5M H73 102.5 109.4
H72 C5M H73 107.3 108.9
O2' CA' CB' 108.0 109.4
O2' CA' HA'1 112.8 108.0
O2' CA' HA'2 112.8 108.7
CB' CA' HA'1 112.8 110.1
CB' CA' HA'2 112.8 111.6
CA' CB' NC' 109.6 109.6
CA' CB' HB'1 112.2 111.3
CA' CB' HB'2 112.2 110.4
HA'1 CA' HA'2 97.7 109.0
NC' CB' HB'1 112.2 108.2
NC' CB' HB'2 112.2 108.2
CB' NC' CD' 128.7 111.9
CB' NC' HC' 105.5 107.1
HB'1 CB' HB'2 98.2 109.1
CD' NC' HC' 105.5 109.4
NC' CD' NE' 119.6 111.9
NC' CD' NF' 122.3 108.1
NC' CD' HD' 40.4 111.1
NE' CD' NF' 118.1 108.5
NE' CD' HD' 159.8 109.5
CD' NE' HE'1 108.5 109.0
CD' NE' HE'2 119.6 109.6
NF' CD' HD' 81.9 107.6
CD' NF' HF'1 107.6 109.3
CD' NF' HF'2 122.2 108.9
HE'1 NE' HE'2 108.6 106.1
HF'1 NF' HF'2 107.7 106.2

Torsion Angles for GMU

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP3 O5' 238.8 107.1
OP2 P OP3 OP1   233.8
OP3 P OP2 H2P 180.0 78.5
O5' P OP3 OP1   126.6
OP3 P O5' C5' 42.4 53.2
H3P OP3 P OP2 180.0 282.5
H3P OP3 P O5' 301.2 175.4
H3P OP3 P OP1   48.7
OP2 P OP3 H3P 180.0 282.5
OP3 P OP2 O5' 125.0 252.3
OP3 P OP2 OP1   126.5
O5' P OP2 OP1   234.2
OP2 P O5' C5' 171.8 305.8
O5' P OP3 H3P 301.2 175.4
OP3 P O5' OP2 230.6 107.4
OP3 P O5' OP1   233.1
OP2 P O5' OP1   125.8
O5' P OP2 H2P 55.0 186.2
P O5' C5' C4' 170.9 180.0
P O5' C5' H5' 45.6 300.1
P O5' C5' H5'' 296.1 59.9
OP1 P OP3 H3P   48.7
OP3 P OP1 OP2   240.0
OP3 P OP1 O5'   120.7
OP2 P OP1 O5'   240.7
OP1 P OP2 H2P   312.0
OP1 P O5' C5'   180.1
H2P OP2 P O5' 55.0 186.2
H2P OP2 P OP1   312.0
C5' O5' P OP1   180.1
C4' C5' O5' H5' 125.3 239.9
C4' C5' O5' H5'' 234.8 120.1
O5' C5' C4' O4' 299.1 62.4
O5' C5' C4' C3' 55.3 179.5
O5' C5' C4' H4' 176.2 305.4
H5' C5' O5' H5'' 109.5 240.2
O5' C5' C4' H5' 234.8 119.5
O5' C5' C4' H5'' 125.2 240.4
H5' C5' C4' H5'' 250.5 120.9
O4' C4' C5' C3' 243.9 242.9
O4' C4' C5' H4' 122.9 117.0
C5' C4' O4' C1' 146.3 109.0
C3' C4' C5' H4' 239.0 234.1
C5' C4' C3' O3' 74.6 156.8
C5' C4' C3' C2' 196.1 273.1
C5' C4' C3' H1 317.8 36.8
O5' C5' H5' C4' 123.9 240.8
O5' C5' H5' H5'' 241.9 119.6
C4' C5' H5' H5'' 118.0 238.8
H5' C5' C4' O4' 64.4 302.9
H5' C5' C4' C3' 180.5 60.0
H5' C5' C4' H4' 301.5 185.9
O5' C5' H5'' C4' 236.1 119.2
O5' C5' H5'' H5' 118.0 240.4
C4' C5' H5'' H5' 241.9 121.2
H5'' C5' C4' O4' 173.9 182.0
H5'' C5' C4' C3' 290.0 299.1
H5'' C5' C4' H4' 51.0 65.0
O4' C4' C5' H5' 64.4 302.9
O4' C4' C5' H5'' 173.9 182.0
C5' C4' O4' C3' 123.2 121.7
C5' C4' O4' H4' 244.2 241.9
C3' C4' O4' H4' 121.0 120.2
O4' C4' C3' O3' 195.9 275.3
O4' C4' C3' C2' 317.4 31.5
O4' C4' C3' H1 79.1 155.2
C4' O4' C1' C2' 5.8 348.7
C4' O4' C1' N1 243.5 227.1
C4' O4' C1' H1' 125.7 110.3
C3' C4' C5' H5' 180.5 60.0
C3' C4' C5' H5'' 290.0 299.1
C5' C4' C3' O4' 238.7 241.6
C5' C4' C3' H4' 115.8 124.4
O4' C4' C3' H4' 237.1 242.8
C3' C4' O4' C1' 23.1 347.2
O3' C3' C4' C2' 238.5 243.7
O3' C3' C4' H1 116.8 120.1
C4' C3' O3' H3' 180.0 15.2
C2' C3' C4' H1 238.3 236.3
C4' C3' C2' C1' 45.0 322.9
C4' C3' C2' O2' 287.7 202.0
C4' C3' C2' H2' 168.1 80.9
H4' C4' C5' H5' 301.5 185.9
H4' C4' C5' H5'' 51.0 65.0
C5' C4' H4' O4' 121.1 117.3
C5' C4' H4' C3' 237.0 233.5
O4' C4' H4' C3' 115.9 116.2
H4' C4' O4' C1' 262.1 227.0
H4' C4' C3' O3' 318.8 32.5
H4' C4' C3' C2' 80.3 148.7
H4' C4' C3' H1 202.0 272.4
C1' O4' C4' C3' 23.1 347.2
C1' O4' C4' H4' 262.1 227.0
C3' C2' C1' O4' 327.8 30.7
O4' C1' C2' O2' 82.3 151.3
O4' C1' C2' H2' 202.3 273.4
C2' C1' O4' N1 122.3 121.6
C2' C1' O4' H1' 240.1 238.4
N1 C1' O4' H1' 117.9 116.8
O4' C1' N1 C2 202.7 212.2
O4' C1' N1 C6 23.5 32.3
O3' C3' C4' H4' 318.8 32.5
C4' C3' O3' C2' 112.6 110.7
C4' C3' O3' H1 234.9 235.8
C2' C3' O3' H1 122.4 125.1
O3' C3' C2' C1' 163.4 77.4
O3' C3' C2' O2' 46.1 316.5
O3' C3' C2' H2' 286.5 195.4
C2' C3' C4' H4' 80.3 148.7
C4' C3' C2' O3' 241.6 245.5
C4' C3' C2' H1 124.6 124.0
O4' C1' C2' C3' 327.8 30.7
O3' C3' C2' H1 243.0 238.5
C2' C3' O3' H3' 67.4 264.4
C1' C2' C3' O2' 117.3 120.8
C1' C2' C3' H2' 236.9 242.0
C3' C2' C1' N1 87.9 150.0
C3' C2' C1' H1' 205.7 271.5
O2' C2' C3' H2' 119.6 121.1
C3' C2' O2' CA' 184.6 300.0
H1 C3' C4' H4' 202.0 272.4
C4' C3' H1 O3' 120.9 120.1
C4' C3' H1 C2' 244.9 243.0
O3' C3' H1 C2' 123.9 122.8
H1 C3' O3' H3' 305.1 139.4
H1 C3' C2' C1' 280.4 198.9
H1 C3' C2' O2' 163.0 78.0
H1 C3' C2' H2' 43.5 316.9
H3' O3' C3' C2' 67.4 264.4
H3' O3' C3' H1 305.1 139.4
O4' C1' C2' N1 240.0 240.7
O4' C1' C2' H1' 122.1 119.3
C1' C2' C3' H1 280.4 198.9
C3' C2' C1' O2' 245.5 239.4
C3' C2' C1' H2' 125.5 117.3
O2' C2' C1' H2' 240.0 237.9
C1' C2' O2' CA' 75.5 185.5
N1 C1' C2' H1' 242.2 238.6
C2' C1' N1 C2 84.7 94.3
C2' C1' N1 C6 265.5 274.4
O2' C2' C3' H1 163.0 78.0
C3' C2' O2' C1' 109.2 114.5
C3' C2' O2' H2' 233.6 238.0
C1' C2' O2' H2' 124.5 123.5
O2' C2' C1' N1 202.3 270.6
O2' C2' C1' H1' 320.2 32.1
C2' O2' CA' CB' 178.7 180.3
C2' O2' CA' HA'1 53.5 300.0
C2' O2' CA' HA'2 304.0 58.1
H2' C2' C3' H1 43.5 316.9
C3' C2' H2' C1' 244.3 247.7
C3' C2' H2' O2' 120.8 123.3
C1' C2' H2' O2' 236.5 235.6
H2' C2' C1' N1 322.4 32.7
H2' C2' C1' H1' 80.2 154.2
H2' C2' O2' CA' 311.0 62.0
O4' C1' N1 C2' 118.0 117.9
O4' C1' N1 H1' 237.8 242.3
N1 C1' C2' O2' 202.3 270.6
N1 C1' C2' H2' 322.4 32.7
C2' C1' N1 H1' 119.9 124.4
C2 N1 C1' C6 179.2 179.9
C1' N1 C2 O2 0.2 0.1
C1' N1 C2 N3 178.8 180.0
C1' N1 C6 C5 178.4 180.0
C1' N1 C6 H6 358.4 360.0
O4' C1' H1' C2' 242.1 242.1
O4' C1' H1' N1 119.9 117.8
H1' C1' C2' O2' 320.2 32.1
H1' C1' C2' H2' 80.2 154.2
C2' C1' H1' N1 237.8 235.7
H1' C1' N1 C2 324.9 329.9
H1' C1' N1 C6 145.6 150.0
C2 N1 C1' H1' 324.9 329.9
C1' N1 C2 C6 180.7 180.1
C2 N1 C6 C5 359.2 0.0
C2 N1 C6 H6 179.2 180.0
O2 C2 N1 N3 181.4 180.1
N1 C2 N3 C4 3.0 360.0
N1 C2 N3 HN3 183.0 180.1
C6 N1 C1' H1' 145.6 150.0
C1' N1 C6 C2 179.2 179.9
C6 N1 C2 O2 179.5 180.0
C6 N1 C2 N3 358.1 360.0
C5 C6 N1 H6 180.0 180.0
N1 C6 C5 C5M 180.4 180.0
N1 C6 C5 C4 2.6 0.0
O2 C2 N1 C6 179.5 180.0
N1 C2 O2 N3 178.5 179.9
O2 C2 N3 C4 181.6 179.9
O2 C2 N3 HN3 1.6 0.0
N3 C2 N1 C6 358.1 360.0
N1 C2 N3 O2 181.4 180.1
C4 N3 C2 HN3 180.0 179.9
C2 N3 C4 C5 358.8 0.1
C2 N3 C4 O4 180.3 180.1
C2 N3 C4 HN3 180.0 180.1
C6 C5 C4 N3 358.4 360.0
C5M C5 C4 N3 180.5 180.0
C5 C4 N3 O4 178.5 180.0
C2 N3 HN3 C4 180.0 179.9
HN3 N3 C4 C5 178.8 180.0
HN3 N3 C4 O4 0.3 360.0
N1 C6 C5 H6 180.0 180.0
N3 C4 C5 C6 358.4 360.0
C5M C5 C6 C4 177.7 180.0
C6 C5 C5M H71 54.8 64.2
C6 C5 C5M H72 180.0 304.0
C6 C5 C5M H73 305.3 184.4
C6 C5 C4 O4 176.8 180.0
N1 C6 H6 C5 180.0 180.0
H6 C6 C5 C5M 0.4 360.0
H6 C6 C5 C4 182.6 180.0
N3 C4 C5 C5M 180.5 180.0
C5M C5 C6 H6 0.4 360.0
C6 C5 C5M C4 182.3 180.0
C5M C5 C4 O4 359.0 360.0
H71 C5M C5 H72 234.8 120.2
H71 C5M C5 H73 109.5 239.8
H72 C5M C5 H73 234.7 119.6
C5 C4 N3 HN3 178.8 180.0
N3 C4 C5 O4 181.5 180.0
C4 C5 C6 H6 182.6 180.0
C6 C5 C4 C5M 177.8 180.0
C4 C5 C5M H71 232.4 244.2
C4 C5 C5M H72 357.7 124.0
C4 C5 C5M H73 123.0 4.4
H71 C5M C5 C4 232.4 244.2
C5 C5M H71 H72 134.5 239.5
C5 C5M H71 H73 247.3 120.4
H72 C5M H71 H73 112.8 240.8
H72 C5M C5 C4 357.7 124.0
C5 C5M H72 H71 234.8 120.4
C5 C5M H72 H73 125.3 239.9
H71 C5M H72 H73 250.5 119.5
H73 C5M C5 C4 123.0 4.4
C5 C5M H73 H71 112.7 239.6
C5 C5M H73 H72 225.5 120.2
H71 C5M H73 H72 112.7 240.5
O4 C4 N3 HN3 0.3 360.0
N3 C4 O4 C5 178.4 180.0
CA' O2' C2' H2' 311.0 62.0
CB' CA' O2' HA'1 125.3 240.2
CB' CA' O2' HA'2 234.7 122.1
O2' CA' CB' NC' 297.5 178.5
O2' CA' CB' HB'1 172.2 298.1
O2' CA' CB' HB'2 62.8 59.4
HA'1 CA' O2' HA'2 109.5 241.9
O2' CA' CB' HA'1 234.7 118.5
O2' CA' CB' HA'2 125.3 239.6
HA'1 CA' CB' HA'2 250.5 121.2
NC' CB' CA' HB'1 125.3 240.4
NC' CB' CA' HB'2 234.7 119.1
CA' CB' NC' CD' 86.6 180.1
CA' CB' NC' HC' 321.3 300.0
HB'1 CB' CA' HB'2 109.4 238.7
O2' CA' HA'1 CB' 122.6 240.7
O2' CA' HA'1 HA'2 241.3 118.0
CB' CA' HA'1 HA'2 118.7 237.3
HA'1 CA' CB' NC' 62.8 60.0
HA'1 CA' CB' HB'1 297.5 179.7
HA'1 CA' CB' HB'2 188.1 301.0
O2' CA' HA'2 CB' 237.4 120.8
O2' CA' HA'2 HA'1 118.7 242.5
CB' CA' HA'2 HA'1 241.3 121.8
HA'2 CA' CB' NC' 172.2 298.9
HA'2 CA' CB' HB'1 47.0 58.5
HA'2 CA' CB' HB'2 297.5 179.8
NC' CB' CA' HA'1 62.8 60.0
NC' CB' CA' HA'2 172.2 298.9
CA' CB' NC' HB'1 234.7 121.5
CA' CB' NC' HB'2 125.3 239.6
HB'1 CB' NC' HB'2 250.6 118.1
CD' NC' CB' HC' 125.3 240.1
CB' NC' CD' NE' 172.8 297.2
CB' NC' CD' NF' 352.7 177.8
CB' NC' CD' HD' 357.2 60.0
HB'1 CB' CA' HA'1 297.5 179.7
HB'1 CB' CA' HA'2 47.0 58.5
CA' CB' HB'1 NC' 123.9 239.5
CA' CB' HB'1 HB'2 241.9 122.1
NC' CB' HB'1 HB'2 118.1 242.5
HB'1 CB' NC' CD' 211.9 58.6
HB'1 CB' NC' HC' 86.6 178.5
HB'2 CB' CA' HA'1 188.1 301.0
HB'2 CB' CA' HA'2 297.5 179.8
CA' CB' HB'2 NC' 236.1 119.9
CA' CB' HB'2 HB'1 118.1 237.4
NC' CB' HB'2 HB'1 241.9 117.5
HB'2 CB' NC' CD' 321.3 300.5
HB'2 CB' NC' HC' 196.0 60.4
CD' NC' CB' HB'1 211.9 58.6
CD' NC' CB' HB'2 321.3 300.5
CB' NC' CD' HC' 234.7 118.5
NE' CD' NC' NF' 180.1 119.4
NE' CD' NC' HD' 175.6 237.2
NC' CD' NE' HE'1 54.7 183.2
NC' CD' NE' HE'2 180.0 67.5
NF' CD' NC' HD' 355.5 117.8
NC' CD' NF' HF'1 54.7 302.3
NC' CD' NF' HF'2 180.0 58.0
HC' NC' CB' HB'1 86.6 178.5
HC' NC' CB' HB'2 196.0 60.4
CB' NC' HC' CD' 138.6 238.5
HC' NC' CD' NE' 298.1 178.6
HC' NC' CD' NF' 118.0 59.3
HC' NC' CD' HD' 122.5 301.5
NE' CD' NC' HC' 298.1 178.6
NC' CD' NE' NF' 179.9 240.9
NC' CD' NE' HD' 351.8 123.7
NF' CD' NE' HD' 171.9 242.8
NE' CD' NF' HF'1 234.6 180.8
NE' CD' NF' HF'2 359.9 296.4
HE'1 NE' CD' HE'2 234.7 115.7
NF' CD' NC' HC' 118.0 59.3
NC' CD' NF' NE' 180.1 121.5
NC' CD' NF' HD' 3.0 239.9
NE' CD' NF' HD' 182.8 118.4
NF' CD' NE' HE'1 234.9 302.3
NF' CD' NE' HE'2 0.1 186.6
HF'1 NF' CD' HF'2 234.7 244.3
HD' CD' NC' HC' 122.5 301.5
NC' CD' HD' NE' 11.1 235.8
NC' CD' HD' NF' 183.8 118.1
NE' CD' HD' NF' 172.8 242.3
HD' CD' NE' HE'1 63.0 59.5
HD' CD' NE' HE'2 188.2 303.8
HD' CD' NF' HF'1 51.8 62.4
HD' CD' NF' HF'2 177.1 178.0
HE'1 NE' CD' NF' 234.9 302.3
HE'1 NE' CD' HD' 63.0 59.5
CD' NE' HE'1 HE'2 131.5 242.0
HE'2 NE' CD' NF' 0.1 186.6
HE'2 NE' CD' HD' 188.2 303.8
CD' NE' HE'2 HE'1 234.8 117.6
HF'1 NF' CD' HD' 51.8 62.4
CD' NF' HF'1 HF'2 133.5 117.4
HF'2 NF' CD' HD' 177.1 178.0
CD' NF' HF'2 HF'1 234.8 242.3