PDB Chemical Component GMS

Ideal Model

Chemical Description

Name 2'-DEOXYGUANOSINE-5'-MONOSELENOPHOSPHATE
Formula C10 H14 N5 O6 P Se
Formal charge 0
Molecular weight 410.182 g/mol
Component type DNA LINKING
Nonstandard Parent Id DG

Chemical features

Atom count 37
Chiral atom count 4
Chiral atoms P C4' C1' C3'
Observed leaving atoms HO3'
Bond count 39
Aromatic bond count 5

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxy-5'-O-selenophosphonoguanosine
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3-hydroxy-oxolan-2-yl]methoxy-selanyl-phosphinic acid

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=Nc2n(cnc2C(=O)N1)[C@H]3C[C@H](O)[C@@H](CO[P](O)([SeH])=O)O3
SMILES (CACTVS) NC1=Nc2n(cnc2C(=O)N1)[CH]3C[CH](O)[CH](CO[P](O)([SeH])=O)O3
Stereo SMILES (OpenEye) c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)CO[P@](=O)(O)[SeH])O)N=C(NC2=O)N
InChI descriptor InChI=1S/C10H14N5O6PSe/c11-10-13-8-7(9(17)14-10)12-3-15(8)6-1-4(16)5(21-6)2-20-22(18,19)23/h3-6,16H,1-2H2,(H2,18,19,23)(H3,11,13,14,17)/t4-,5+,6+/m0/s1
InChIKey descriptor MMKHSOCVUGNOOR-KVQBGUIXSA-N

Status Information

Last modified 2012-01-05
Created 2002-11-18
Release status REL
Model PDB code 1VRO
Processing site RCSB