PDB Chemical Component GMA
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for GMA
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.464 |
1.469 |
| N |
H |
1.012 |
1.009 |
| N |
H2 |
1.020 |
1.009 |
| CA |
CD |
1.539 |
1.506 |
| CA |
CB |
1.541 |
1.528 |
| CA |
HA |
1.094 |
1.090 |
| CD |
O1 |
1.229 |
1.212 |
| CD |
N2 |
1.331 |
1.347 |
| CB |
CG |
1.539 |
1.529 |
| CB |
HB2 |
1.093 |
1.090 |
| CB |
HB3 |
1.091 |
1.090 |
| CG |
C |
1.529 |
1.506 |
| CG |
HG2 |
1.090 |
1.090 |
| CG |
HG3 |
1.091 |
1.090 |
| C |
O |
1.251 |
1.208 |
| C |
OXT |
1.250 |
1.342 |
| OXT |
HXT |
0.950 |
0.966 |
| N2 |
HN2A |
1.006 |
0.970 |
| N2 |
HN1 |
1.012 |
0.971 |
Bond Angles for GMA
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
116.1 |
106.7 |
| CA |
N |
H2 |
111.9 |
106.7 |
| N |
CA |
CD |
110.6 |
109.4 |
| N |
CA |
CB |
108.4 |
109.5 |
| N |
CA |
HA |
109.9 |
109.4 |
| H |
N |
H2 |
24.0 |
106.6 |
| CD |
CA |
CB |
112.6 |
109.5 |
| CD |
CA |
HA |
108.2 |
109.5 |
| CA |
CD |
O1 |
121.2 |
120.1 |
| CA |
CD |
N2 |
117.6 |
120.0 |
| CB |
CA |
HA |
107.1 |
109.5 |
| CA |
CB |
CG |
113.0 |
109.6 |
| CA |
CB |
HB2 |
108.8 |
109.5 |
| CA |
CB |
HB3 |
110.1 |
109.5 |
| O1 |
CD |
N2 |
121.1 |
119.9 |
| CD |
N2 |
HN2A |
119.0 |
120.1 |
| CD |
N2 |
HN1 |
119.4 |
120.0 |
| CG |
CB |
HB2 |
108.5 |
109.4 |
| CG |
CB |
HB3 |
108.5 |
109.5 |
| CB |
CG |
C |
111.8 |
109.6 |
| CB |
CG |
HG2 |
110.2 |
109.4 |
| CB |
CG |
HG3 |
109.5 |
109.5 |
| HB2 |
CB |
HB3 |
107.9 |
109.4 |
| C |
CG |
HG2 |
107.4 |
109.4 |
| C |
CG |
HG3 |
109.5 |
109.5 |
| CG |
C |
O |
116.9 |
120.0 |
| CG |
C |
OXT |
117.4 |
120.1 |
| HG2 |
CG |
HG3 |
108.3 |
109.5 |
| O |
C |
OXT |
125.7 |
119.9 |
| C |
OXT |
HXT |
117.4 |
120.1 |
| HN2A |
N2 |
HN1 |
121.4 |
119.9 |
Torsion Angles for GMA
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
25.9 |
113.7 |
| CD |
CA |
N |
CB |
123.9 |
120.1 |
| CD |
CA |
N |
HA |
240.6 |
240.0 |
| N |
CA |
CD |
O1 |
123.1 |
330.0 |
| N |
CA |
CD |
N2 |
303.4 |
150.0 |
| CB |
CA |
N |
HA |
116.7 |
120.0 |
| N |
CA |
CB |
CG |
181.3 |
300.0 |
| N |
CA |
CB |
HB2 |
301.8 |
60.0 |
| N |
CA |
CB |
HB3 |
59.9 |
179.9 |
| CA |
N |
H |
H2 |
274.7 |
246.2 |
| H |
N |
CA |
CD |
80.6 |
173.8 |
| H |
N |
CA |
CB |
316.8 |
53.7 |
| H |
N |
CA |
HA |
200.0 |
293.7 |
| CA |
N |
H2 |
H |
105.4 |
113.8 |
| H2 |
N |
CA |
CD |
54.8 |
60.1 |
| H2 |
N |
CA |
CB |
290.9 |
300.0 |
| H2 |
N |
CA |
HA |
174.2 |
180.0 |
| CD |
CA |
N |
H |
80.6 |
173.8 |
| CD |
CA |
N |
H2 |
54.8 |
60.1 |
| N |
CA |
CD |
CB |
238.5 |
240.0 |
| N |
CA |
CD |
HA |
120.4 |
119.9 |
| CB |
CA |
CD |
HA |
241.8 |
239.9 |
| CD |
CA |
CB |
CG |
58.6 |
180.1 |
| CD |
CA |
CB |
HB2 |
179.2 |
300.1 |
| CD |
CA |
CB |
HB3 |
297.2 |
59.9 |
| O1 |
CD |
CA |
N2 |
179.7 |
180.0 |
| CA |
CD |
N2 |
HN2A |
177.4 |
179.9 |
| CA |
CD |
N2 |
HN1 |
1.5 |
360.0 |
| CB |
CA |
N |
H |
316.8 |
53.7 |
| CB |
CA |
N |
H2 |
290.9 |
300.0 |
| N |
CA |
CB |
CD |
122.7 |
120.0 |
| N |
CA |
CB |
HA |
241.5 |
240.0 |
| CD |
CA |
CB |
HA |
118.8 |
120.1 |
| CB |
CA |
CD |
O1 |
244.5 |
90.0 |
| CB |
CA |
CD |
N2 |
64.8 |
270.0 |
| CG |
CB |
CA |
HB2 |
239.5 |
240.0 |
| CG |
CB |
CA |
HB3 |
121.5 |
120.1 |
| CA |
CB |
CG |
C |
180.7 |
180.0 |
| CA |
CB |
CG |
HG2 |
300.1 |
300.0 |
| CA |
CB |
CG |
HG3 |
59.2 |
60.0 |
| HB2 |
CB |
CA |
HB3 |
242.0 |
240.1 |
| HA |
CA |
N |
H |
200.0 |
293.7 |
| HA |
CA |
N |
H2 |
174.2 |
180.0 |
| N |
CA |
HA |
CD |
239.2 |
240.1 |
| N |
CA |
HA |
CB |
117.6 |
120.0 |
| CD |
CA |
HA |
CB |
238.4 |
239.9 |
| HA |
CA |
CD |
O1 |
2.7 |
210.1 |
| HA |
CA |
CD |
N2 |
183.0 |
30.0 |
| HA |
CA |
CB |
CG |
299.8 |
60.0 |
| HA |
CA |
CB |
HB2 |
60.3 |
180.0 |
| HA |
CA |
CB |
HB3 |
178.4 |
299.9 |
| O1 |
CD |
CA |
CB |
244.5 |
90.0 |
| O1 |
CD |
CA |
HA |
2.7 |
210.1 |
| CA |
CD |
O1 |
N2 |
180.3 |
180.0 |
| O1 |
CD |
N2 |
HN2A |
357.8 |
359.9 |
| O1 |
CD |
N2 |
HN1 |
181.8 |
180.0 |
| N2 |
CD |
CA |
CB |
64.8 |
270.0 |
| N2 |
CD |
CA |
HA |
183.0 |
30.0 |
| CA |
CD |
N2 |
O1 |
179.7 |
180.0 |
| HN2A |
N2 |
CD |
HN1 |
176.0 |
180.0 |
| CG |
CB |
CA |
HA |
299.8 |
60.0 |
| CA |
CB |
CG |
HB2 |
120.7 |
120.0 |
| CA |
CB |
CG |
HB3 |
237.7 |
239.9 |
| HB2 |
CB |
CG |
HB3 |
117.0 |
119.9 |
| C |
CG |
CB |
HG2 |
240.6 |
240.0 |
| C |
CG |
CB |
HG3 |
121.6 |
120.1 |
| CB |
CG |
C |
O |
67.7 |
360.0 |
| CB |
CG |
C |
OXT |
248.1 |
180.0 |
| HG2 |
CG |
CB |
HG3 |
241.0 |
240.0 |
| HB2 |
CB |
CA |
HA |
60.3 |
180.0 |
| CA |
CB |
HB2 |
CG |
236.8 |
239.9 |
| CA |
CB |
HB2 |
HB3 |
119.4 |
120.0 |
| CG |
CB |
HB2 |
HB3 |
242.6 |
240.0 |
| HB2 |
CB |
CG |
C |
60.1 |
60.0 |
| HB2 |
CB |
CG |
HG2 |
179.5 |
180.0 |
| HB2 |
CB |
CG |
HG3 |
298.5 |
299.9 |
| HB3 |
CB |
CA |
HA |
178.4 |
299.9 |
| CA |
CB |
HB3 |
CG |
124.1 |
120.1 |
| CA |
CB |
HB3 |
HB2 |
241.5 |
240.1 |
| CG |
CB |
HB3 |
HB2 |
117.4 |
119.9 |
| HB3 |
CB |
CG |
C |
303.0 |
300.1 |
| HB3 |
CB |
CG |
HG2 |
62.5 |
60.1 |
| HB3 |
CB |
CG |
HG3 |
181.5 |
180.1 |
| C |
CG |
CB |
HB2 |
60.1 |
60.0 |
| C |
CG |
CB |
HB3 |
303.0 |
300.1 |
| CB |
CG |
C |
HG2 |
121.0 |
119.9 |
| CB |
CG |
C |
HG3 |
238.4 |
239.9 |
| HG2 |
CG |
C |
HG3 |
117.4 |
120.0 |
| O |
C |
CG |
OXT |
179.6 |
180.0 |
| CG |
C |
OXT |
HXT |
180.0 |
180.0 |
| HG2 |
CG |
CB |
HB2 |
179.5 |
180.0 |
| HG2 |
CG |
CB |
HB3 |
62.5 |
60.1 |
| CB |
CG |
HG2 |
C |
237.9 |
240.0 |
| CB |
CG |
HG2 |
HG3 |
119.7 |
120.0 |
| C |
CG |
HG2 |
HG3 |
241.8 |
240.0 |
| HG2 |
CG |
C |
O |
306.7 |
240.0 |
| HG2 |
CG |
C |
OXT |
127.0 |
60.0 |
| HG3 |
CG |
CB |
HB2 |
298.5 |
299.9 |
| HG3 |
CG |
CB |
HB3 |
181.5 |
180.1 |
| CB |
CG |
HG3 |
C |
123.0 |
120.1 |
| CB |
CG |
HG3 |
HG2 |
239.8 |
240.1 |
| C |
CG |
HG3 |
HG2 |
116.9 |
120.0 |
| HG3 |
CG |
C |
O |
189.2 |
120.0 |
| HG3 |
CG |
C |
OXT |
9.6 |
300.0 |
| O |
C |
CG |
HG2 |
306.7 |
240.0 |
| O |
C |
CG |
HG3 |
189.2 |
120.0 |
| CG |
C |
O |
OXT |
180.4 |
180.0 |
| O |
C |
OXT |
HXT |
0.4 |
0.0 |
| OXT |
C |
CG |
HG2 |
127.0 |
60.0 |
| OXT |
C |
CG |
HG3 |
9.6 |
300.0 |
| CG |
C |
OXT |
O |
179.6 |
180.0 |
| CD |
N2 |
HN2A |
HN1 |
184.1 |
180.0 |
| CD |
N2 |
HN1 |
HN2A |
175.9 |
180.0 |