PDB Chemical Component GM1

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GM1

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 N1 1.336 1.347
C1 O1 1.236 1.214
C1 C2 1.508 1.506
N1 HN11 1.011 0.970
N1 HN12 1.005 0.970
C2 N2 1.444 1.469
C2 H21 1.115 1.089
C2 H22 1.115 1.090
N2 HN21 0.980 1.008
N2 HN22 1.019 1.008

Bond Angles for GM1

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N1 C1 O1 122.2 120.0
N1 C1 C2 114.4 120.1
C1 N1 HN11 120.4 120.0
C1 N1 HN12 113.6 119.9
O1 C1 C2 117.5 120.0
C1 C2 N2 117.9 109.5
C1 C2 H21 109.2 109.5
C1 C2 H22 109.2 109.5
HN11 N1 HN12 126.0 120.0
N2 C2 H21 109.2 109.5
N2 C2 H22 109.2 109.5
C2 N2 HN21 119.8 106.7
C2 N2 HN22 109.1 106.7
H21 C2 H22 100.9 109.4
HN21 N2 HN22 38.1 106.7

Torsion Angles for GM1

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O1 C1 N1 C2 207.9 180.0
N1 C1 C2 N2 80.1 180.0
N1 C1 C2 H21 205.4 60.0
N1 C1 C2 H22 314.8 300.1
HN11 N1 C1 HN12 180.9 180.0
N1 C1 O1 C2 151.3 180.0
O1 C1 N1 HN11 206.8 0.0
O1 C1 N1 HN12 25.9 180.1
O1 C1 C2 N2 233.6 360.0
O1 C1 C2 H21 358.9 240.0
O1 C1 C2 H22 108.3 120.0
N1 C1 C2 O1 206.5 180.0
C2 C1 N1 HN11 358.9 180.0
C2 C1 N1 HN12 178.0 0.0
N2 C2 C1 H21 234.7 120.0
N2 C2 C1 H22 125.3 240.0
C1 C2 N2 HN21 95.2 180.0
C1 C2 N2 HN22 54.7 293.8
H21 C2 C1 H22 250.6 120.0
HN11 N1 C1 O1 206.8 0.0
HN11 N1 C1 C2 358.9 180.0
C1 N1 HN11 HN12 179.0 180.0
HN12 N1 C1 O1 25.9 180.1
HN12 N1 C1 C2 178.0 0.0
C1 N1 HN12 HN11 181.0 180.0
C1 C2 N2 H21 125.3 239.9
C1 C2 N2 H22 234.7 120.0
H21 C2 N2 H22 109.4 240.1
HN21 N2 C2 HN22 40.5 246.3
C1 C2 H21 N2 229.8 120.1
C1 C2 H21 H22 114.9 240.0
N2 C2 H21 H22 245.1 120.0
H21 C2 N2 HN21 329.9 300.1
H21 C2 N2 HN22 289.4 53.8
C1 C2 H22 N2 130.2 240.0
C1 C2 H22 H21 245.1 120.0
N2 C2 H22 H21 114.9 240.1
H22 C2 N2 HN21 220.4 60.0
H22 C2 N2 HN22 180.0 173.8
HN21 N2 C2 H21 329.9 300.1
HN21 N2 C2 H22 220.4 60.0
C2 N2 HN21 HN22 276.8 113.7
HN22 N2 C2 H21 289.4 53.8
HN22 N2 C2 H22 180.0 173.8
C2 N2 HN22 HN21 114.2 246.2