PDB Chemical Component GM0

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GM0

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
P	O1A	1.574	1.610
P	O4	1.573	1.610
P	O8	1.658	1.610
P	O9	1.426	1.480
C1	C2	1.522	1.531
C1	O5	1.499	1.429
C1	H1	1.100	1.090
C1	O1	1.431	1.429
C2	O2	1.484	1.429
C2	C3	1.610	1.532
C2	H2	1.100	1.090
O2	HO2	0.950	0.966
C3	O3	1.364	1.429
C3	C4	1.557	1.532
C3	H3	1.100	1.090
O3	HO3	0.949	0.967
C4	O4	1.511	1.428
C4	C5	1.516	1.531
C4	H4	1.100	1.090
C5	O5	1.440	1.430
C5	C6	1.583	1.530
C5	H5	1.100	1.090
C6	O6	1.446	1.430
C6	C7	1.500	1.530
C6	H6	1.100	1.090
O6	HO6	0.950	0.967
C7	O7	1.512	1.430
C7	H71	1.100	1.090
C7	H72	1.100	1.090
O7	HO7	0.950	0.968
O1A	H13	0.950	0.967
O8	H14	0.950	0.967
O1	HO1	0.950	0.967

Bond Angles for GM0

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O1A	P	O4	99.7	109.5
O1A	P	O8	116.7	109.5
O1A	P	O9	112.5	109.5
P	O1A	H13	109.5	114.0
O4	P	O8	105.4	109.5
O4	P	O9	123.8	109.5
P	O4	C4	121.9	123.0
O8	P	O9	99.6	109.4
P	O8	H14	109.5	114.0
C2	C1	O5	109.3	109.4
C2	C1	H1	109.0	109.5
C2	C1	O1	109.5	109.5
C1	C2	O2	109.4	109.5
C1	C2	C3	109.6	109.2
C1	C2	H2	111.7	109.6
O5	C1	H1	109.3	109.5
O5	C1	O1	109.5	109.5
C1	O5	C5	115.5	114.1
H1	C1	O1	110.2	109.5
C1	O1	HO1	109.5	113.9
O2	C2	C3	103.0	109.5
O2	C2	H2	112.3	109.5
C2	O2	HO2	109.5	114.0
C3	C2	H2	110.4	109.5
C2	C3	O3	106.7	109.6
C2	C3	C4	109.4	109.1
C2	C3	H3	108.8	109.6
O3	C3	C4	110.0	109.5
O3	C3	H3	112.4	109.5
C3	O3	HO3	109.5	114.0
C4	C3	H3	109.5	109.6
C3	C4	O4	110.1	109.6
C3	C4	C5	105.2	109.2
C3	C4	H4	112.7	109.5
O4	C4	C5	101.4	109.5
O4	C4	H4	113.4	109.6
C5	C4	H4	113.3	109.5
C4	C5	O5	111.8	109.4
C4	C5	C6	115.7	109.5
C4	C5	H5	107.7	109.5
O5	C5	C6	105.7	109.5
O5	C5	H5	108.7	109.5
C6	C5	H5	106.9	109.5
C5	C6	O6	110.8	109.5
C5	C6	C7	110.6	109.5
C5	C6	H6	108.8	109.5
O6	C6	C7	106.4	109.5
O6	C6	H6	110.6	109.4
C6	O6	HO6	109.5	113.9
C7	C6	H6	109.8	109.5
C6	C7	O7	103.2	109.5
C6	C7	H71	111.0	109.5
C6	C7	H72	111.0	109.5
O7	C7	H71	111.0	109.5
O7	C7	H72	111.0	109.4
C7	O7	HO7	109.5	114.0
H71	C7	H72	109.5	109.5

Torsion Angles for GM0

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O4	P	O1A	O8	112.7	240.0
O4	P	O1A	O9	227.1	120.0
O1A	P	O4	C4	57.9	295.0
O8	P	O1A	O9	114.3	240.1
O1A	P	O8	H14	238.6	60.0
O1A	P	O4	O8	238.7	120.0
O1A	P	O4	O9	125.6	240.0
O4	P	O1A	H13	227.1	300.0
O8	P	O4	O9	246.9	120.0
O4	P	O8	H14	129.1	180.0
C3	C4	O4	P	120.1	120.0
P	O4	C4	C5	231.1	239.7
P	O4	C4	H4	352.9	359.8
O1A	P	O8	O4	109.5	240.0
O1A	P	O8	O9	238.6	120.0
O8	P	O1A	H13	114.3	60.0
O4	P	O8	O9	129.2	240.0
O8	P	O4	C4	179.2	175.0
O1A	P	O9	O4	240.2	120.0
O1A	P	O9	O8	124.3	240.0
O9	P	O1A	H13	0.0	180.0
O4	P	O9	O8	244.1	120.0
O9	P	O4	C4	292.3	55.1
O9	P	O8	H14	360.0	300.0
O5	C1	C2	H1	240.7	240.0
O5	C1	C2	O1	120.0	120.0
C2	C1	O5	C5	305.4	298.8
H1	C1	C2	O1	239.4	240.0
C2	C1	O1	HO1	180.0	180.0
O2	C2	C1	C3	247.7	240.1
O2	C2	C1	H2	125.0	120.1
C1	C2	O2	HO2	180.0	300.0
C3	C2	C1	H2	237.3	240.0
C1	C2	C3	O3	182.2	183.1
C1	C2	C3	C4	301.2	303.0
C1	C2	C3	H3	60.8	63.0
C2	C1	O5	H1	119.2	120.0
C2	C1	O5	O1	240.0	240.0
O5	C1	C2	O2	299.6	297.7
O5	C1	C2	C3	51.9	57.6
O5	C1	C2	H2	174.6	177.6
H1	C1	O5	O1	120.8	120.1
O5	C1	O1	HO1	60.1	60.1
C4	C5	O5	C1	60.9	61.1
C1	O5	C5	C6	187.6	181.2
C1	O5	C5	H5	302.1	301.2
C2	C1	H1	O5	240.6	240.1
C2	C1	H1	O1	120.2	120.0
H1	C1	C2	O2	59.0	57.7
H1	C1	C2	C3	171.2	177.6
H1	C1	C2	H2	294.0	297.6
O5	C1	H1	O1	239.6	240.0
H1	C1	O5	C5	186.2	178.9
H1	C1	O1	HO1	299.9	300.0
C2	C1	O1	O5	119.9	119.9
C2	C1	O1	H1	240.1	240.0
O1	C1	C2	O2	179.6	177.7
O1	C1	C2	C3	291.9	297.6
O1	C1	C2	H2	54.6	57.6
O5	C1	O1	H1	120.2	120.0
O1	C1	O5	C5	65.4	58.8
O2	C2	C1	O5	299.6	297.7
O2	C2	C1	H1	59.0	57.7
O2	C2	C1	O1	179.6	177.7
C1	C2	O2	C3	116.5	119.7
C1	C2	O2	H2	235.3	239.8
C3	C2	O2	H2	118.8	120.1
O2	C2	C3	O3	298.7	303.1
O2	C2	C3	C4	57.6	62.9
O2	C2	C3	H3	177.2	182.9
C3	C2	C1	O5	51.9	57.6
C3	C2	C1	H1	171.2	177.6
C3	C2	C1	O1	291.9	297.6
C1	C2	C3	O2	243.6	240.1
C1	C2	C3	H2	123.5	120.0
O2	C2	C3	H2	239.9	239.9
C3	C2	O2	HO2	63.4	180.3
O3	C3	C2	C4	241.0	240.1
O3	C3	C2	H3	121.5	120.2
C2	C3	O3	HO3	180.0	300.0
C4	C3	C2	H3	240.5	240.1
C2	C3	C4	O4	169.3	176.9
C2	C3	C4	C5	60.8	56.9
C2	C3	C4	H4	296.9	297.0
H2	C2	C1	O5	174.6	177.6
H2	C2	C1	H1	294.0	297.6
H2	C2	C1	O1	54.6	57.6
C1	C2	H2	O2	123.4	120.1
C1	C2	H2	C3	237.8	240.3
O2	C2	H2	C3	114.4	120.1
H2	C2	O2	HO2	304.6	60.2
H2	C2	C3	O3	58.8	63.2
H2	C2	C3	C4	177.7	183.1
H2	C2	C3	H3	297.3	303.0
HO2	O2	C2	C3	63.4	180.3
HO2	O2	C2	H2	304.6	60.2
O3	C3	C2	H2	58.8	63.2
C2	C3	O3	C4	118.6	119.6
C2	C3	O3	H3	240.8	239.8
C4	C3	O3	H3	122.2	120.2
O3	C3	C4	O4	286.2	296.8
O3	C3	C4	C5	177.7	176.8
O3	C3	C4	H4	53.8	56.9
P	O4	C4	C3	120.1	120.0
C4	C3	C2	H2	177.7	183.1
C2	C3	C4	O3	243.1	240.1
C2	C3	C4	H3	119.2	119.9
O3	C3	C4	H3	236.1	239.8
C4	C3	O3	HO3	61.4	180.4
O4	C4	C3	C5	108.5	119.9
O4	C4	C3	H4	232.4	239.8
C5	C4	C3	H4	123.9	119.9
C3	C4	C5	O5	298.2	302.4
C3	C4	C5	C6	177.2	182.4
C3	C4	C5	H5	57.6	62.4
H3	C3	C2	H2	297.3	303.0
C2	C3	H3	O3	118.0	120.2
C2	C3	H3	C4	240.5	240.4
O3	C3	H3	C4	122.6	120.2
H3	C3	O3	HO3	299.2	60.2
H3	C3	C4	O4	50.1	57.0
H3	C3	C4	C5	301.7	297.0
H3	C3	C4	H4	177.8	177.1
HO3	O3	C3	C4	61.4	180.4
HO3	O3	C3	H3	299.2	60.2
C4	O4	P	O8	179.2	175.0
C4	O4	P	O9	292.3	55.1
O4	C4	C3	H3	50.1	57.0
C3	C4	O4	C5	249.0	240.3
C3	C4	O4	H4	127.2	120.1
C5	C4	O4	H4	238.2	239.8
O4	C4	C5	O5	183.5	182.5
O4	C4	C5	C6	62.5	62.5
O4	C4	C5	H5	303.0	302.4
C1	O5	C5	C4	60.9	61.1
C5	C4	C3	H3	301.7	297.0
C3	C4	C5	O4	114.6	120.0
C3	C4	C5	H4	236.5	240.2
O4	C4	C5	H4	121.9	120.2
O5	C5	C4	C6	121.0	120.0
O5	C5	C4	H5	240.6	240.0
C6	C5	C4	H5	119.5	120.0
C4	C5	C6	O6	42.4	55.0
C4	C5	C6	C7	160.1	175.0
C4	C5	C6	H6	280.7	295.0
H4	C4	C3	H3	177.8	177.1
C3	C4	H4	O4	234.1	239.8
C3	C4	H4	C5	119.3	119.7
O4	C4	H4	C5	245.1	239.8
H4	C4	C5	O5	61.7	62.3
H4	C4	C5	C6	300.7	302.3
H4	C4	C5	H5	181.1	182.2
C5	O5	C1	H1	186.2	178.9
C5	O5	C1	O1	65.4	58.8
O5	C5	C4	H4	61.7	62.3
C4	C5	O5	C6	233.4	240.0
C4	C5	O5	H5	118.8	120.0
C6	C5	O5	H5	245.5	240.0
O5	C5	C6	O6	278.2	295.0
O5	C5	C6	C7	35.8	55.0
O5	C5	C6	H6	156.4	175.1
C6	C5	C4	H4	300.7	302.3
C4	C5	C6	O5	124.3	120.0
C4	C5	C6	H5	240.0	240.0
O5	C5	C6	H5	115.7	120.0
O6	C6	C5	C7	242.3	240.0
O6	C6	C5	H6	121.7	120.0
C5	C6	O6	HO6	180.0	60.0
C7	C6	C5	H6	239.4	240.0
C5	C6	C7	O7	158.0	175.0
C5	C6	C7	H71	277.0	295.0
C5	C6	C7	H72	39.0	55.0
H5	C5	C4	H4	181.1	182.2
C4	C5	H5	O5	238.6	240.1
C4	C5	H5	C6	124.9	120.1
O5	C5	H5	C6	246.3	240.0
H5	C5	C6	O6	162.4	175.0
H5	C5	C6	C7	280.1	295.0
H5	C5	C6	H6	40.7	55.1
O6	C6	C5	H5	162.4	175.0
C5	C6	O6	C7	120.2	120.0
C5	C6	O6	H6	239.3	240.0
C7	C6	O6	H6	119.2	120.0
O6	C6	C7	O7	278.3	295.0
O6	C6	C7	H71	37.3	55.0
O6	C6	C7	H72	159.3	175.0
C7	C6	C5	H5	280.1	295.0
C5	C6	C7	O6	239.7	240.0
C5	C6	C7	H6	120.0	120.0
O6	C6	C7	H6	240.3	240.0
C7	C6	O6	HO6	59.8	300.0
O7	C7	C6	H71	241.0	240.0
O7	C7	C6	H72	119.0	120.0
C6	C7	O7	HO7	180.0	180.0
H71	C7	C6	H72	238.0	240.0
H6	C6	C5	H5	40.7	55.1
C5	C6	H6	O6	121.9	120.0
C5	C6	H6	C7	238.9	240.0
O6	C6	H6	C7	117.1	120.0
H6	C6	O6	HO6	300.7	180.0
H6	C6	C7	O7	38.0	55.0
H6	C6	C7	H71	157.0	175.0
H6	C6	C7	H72	279.0	295.0
HO6	O6	C6	C7	59.8	300.0
HO6	O6	C6	H6	300.7	180.0
O7	C7	C6	H6	38.0	55.0
C6	C7	O7	H71	119.0	120.1
C6	C7	O7	H72	241.0	240.0
H71	C7	O7	H72	122.0	120.0
H71	C7	C6	H6	157.0	175.0
C6	C7	H71	O7	245.8	240.0
C6	C7	H71	H72	122.9	120.0
O7	C7	H71	H72	237.1	240.0
H71	C7	O7	HO7	61.0	60.0
H72	C7	C6	H6	279.0	295.0
C6	C7	H72	O7	114.2	120.0
C6	C7	H72	H71	237.1	239.9
O7	C7	H72	H71	122.9	120.0
H72	C7	O7	HO7	299.0	300.0
HO7	O7	C7	H71	61.0	60.0
HO7	O7	C7	H72	299.0	300.0
H13	O1A	P	O4	227.1	300.0
H13	O1A	P	O8	114.3	60.0
H13	O1A	P	O9	0.0	180.0
H14	O8	P	O9	360.0	300.0