PDB Chemical Component GLP
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for GLP
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
1.515 |
1.530 |
C1 |
O1 |
1.407 |
1.428 |
C1 |
O5 |
1.392 |
1.427 |
C1 |
H1 |
1.114 |
1.090 |
C2 |
C3 |
1.519 |
1.531 |
C2 |
N2 |
1.437 |
1.469 |
C2 |
H2 |
1.114 |
1.090 |
C3 |
C4 |
1.514 |
1.533 |
C3 |
O3 |
1.442 |
1.429 |
C3 |
H3 |
1.115 |
1.090 |
C4 |
C5 |
1.543 |
1.530 |
C4 |
O4 |
1.413 |
1.429 |
C4 |
H4 |
1.115 |
1.090 |
C5 |
C6 |
1.539 |
1.529 |
C5 |
O5 |
1.414 |
1.425 |
C5 |
H5 |
1.115 |
1.090 |
C6 |
O6 |
1.449 |
1.429 |
C6 |
H61 |
1.114 |
1.089 |
C6 |
H62 |
1.115 |
1.090 |
O1 |
HO1 |
0.949 |
0.967 |
N2 |
HN21 |
1.021 |
1.009 |
N2 |
HN22 |
1.020 |
1.009 |
O3 |
HO3 |
0.950 |
0.968 |
O4 |
HO4 |
0.949 |
0.967 |
O6 |
P |
1.622 |
1.609 |
P |
O1P |
1.482 |
1.480 |
P |
O2P |
1.467 |
1.610 |
P |
O3P |
1.516 |
1.609 |
O2P |
HOP2 |
0.949 |
0.967 |
O3P |
HOP3 |
0.949 |
0.966 |
Bond Angles for GLP
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
O1 |
109.1 |
109.4 |
C2 |
C1 |
O5 |
110.5 |
109.8 |
C2 |
C1 |
H1 |
108.1 |
109.4 |
C1 |
C2 |
C3 |
110.0 |
109.1 |
C1 |
C2 |
N2 |
109.8 |
109.6 |
C1 |
C2 |
H2 |
109.5 |
109.5 |
O1 |
C1 |
O5 |
106.5 |
109.4 |
O1 |
C1 |
H1 |
112.0 |
109.4 |
C1 |
O1 |
HO1 |
109.1 |
106.8 |
O5 |
C1 |
H1 |
110.7 |
109.5 |
C1 |
O5 |
C5 |
120.2 |
107.6 |
C3 |
C2 |
N2 |
111.1 |
109.6 |
C3 |
C2 |
H2 |
108.0 |
109.5 |
C2 |
C3 |
C4 |
111.4 |
108.7 |
C2 |
C3 |
O3 |
108.4 |
109.9 |
C2 |
C3 |
H3 |
108.3 |
109.5 |
N2 |
C2 |
H2 |
108.3 |
109.5 |
C2 |
N2 |
HN21 |
109.8 |
106.7 |
C2 |
N2 |
HN22 |
112.1 |
106.7 |
C4 |
C3 |
O3 |
107.7 |
109.6 |
C4 |
C3 |
H3 |
109.1 |
109.5 |
C3 |
C4 |
C5 |
108.8 |
109.1 |
C3 |
C4 |
O4 |
113.5 |
109.7 |
C3 |
C4 |
H4 |
106.4 |
109.4 |
O3 |
C3 |
H3 |
112.0 |
109.6 |
C3 |
O3 |
HO3 |
108.4 |
106.7 |
C5 |
C4 |
O4 |
107.0 |
109.6 |
C5 |
C4 |
H4 |
113.0 |
109.5 |
C4 |
C5 |
C6 |
108.5 |
109.4 |
C4 |
C5 |
O5 |
110.7 |
109.8 |
C4 |
C5 |
H5 |
108.5 |
109.3 |
O4 |
C4 |
H4 |
108.2 |
109.5 |
C4 |
O4 |
HO4 |
113.6 |
106.8 |
C6 |
C5 |
O5 |
107.1 |
109.4 |
C6 |
C5 |
H5 |
112.2 |
109.4 |
C5 |
C6 |
O6 |
108.5 |
109.5 |
C5 |
C6 |
H61 |
112.5 |
109.5 |
C5 |
C6 |
H62 |
112.5 |
109.5 |
O5 |
C5 |
H5 |
109.9 |
109.5 |
O6 |
C6 |
H61 |
112.6 |
109.5 |
O6 |
C6 |
H62 |
112.6 |
109.4 |
C6 |
O6 |
P |
121.4 |
106.8 |
H61 |
C6 |
H62 |
97.9 |
109.5 |
HN21 |
N2 |
HN22 |
112.0 |
106.7 |
O6 |
P |
O1P |
107.6 |
109.4 |
O6 |
P |
O2P |
104.3 |
109.5 |
O6 |
P |
O3P |
108.8 |
109.5 |
O1P |
P |
O2P |
116.3 |
109.4 |
O1P |
P |
O3P |
106.1 |
109.5 |
O2P |
P |
O3P |
113.4 |
109.5 |
P |
O2P |
HOP2 |
104.3 |
106.9 |
P |
O3P |
HOP3 |
108.8 |
106.8 |
Torsion Angles for GLP
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1 |
C1 |
C2 |
O5 |
243.3 |
240.0 |
O1 |
C1 |
C2 |
H1 |
122.0 |
119.8 |
C2 |
C1 |
O1 |
HO1 |
180.0 |
180.0 |
O5 |
C1 |
C2 |
H1 |
238.7 |
239.9 |
C2 |
C1 |
O5 |
C5 |
306.9 |
292.4 |
C3 |
C2 |
C1 |
N2 |
237.4 |
240.1 |
C3 |
C2 |
C1 |
H2 |
118.6 |
119.9 |
C1 |
C2 |
C3 |
C4 |
303.7 |
306.5 |
C1 |
C2 |
C3 |
O3 |
185.3 |
186.5 |
C1 |
C2 |
C3 |
H3 |
63.6 |
66.1 |
N2 |
C2 |
C1 |
H2 |
241.2 |
239.8 |
C1 |
C2 |
N2 |
HN21 |
180.0 |
60.1 |
C1 |
C2 |
N2 |
HN22 |
54.8 |
173.9 |
C2 |
C1 |
O1 |
O5 |
119.3 |
120.3 |
C2 |
C1 |
O1 |
H1 |
240.4 |
240.2 |
O1 |
C1 |
C2 |
C3 |
295.1 |
301.2 |
O1 |
C1 |
C2 |
N2 |
57.6 |
61.1 |
O1 |
C1 |
C2 |
H2 |
176.4 |
181.3 |
O5 |
C1 |
O1 |
H1 |
121.1 |
119.9 |
O1 |
C1 |
O5 |
C5 |
65.3 |
52.5 |
C2 |
C1 |
O5 |
O1 |
241.7 |
240.0 |
C2 |
C1 |
O5 |
H1 |
119.7 |
120.1 |
O5 |
C1 |
C2 |
C3 |
51.8 |
61.2 |
O5 |
C1 |
C2 |
N2 |
174.4 |
181.1 |
O5 |
C1 |
C2 |
H2 |
293.1 |
301.3 |
O1 |
C1 |
O5 |
H1 |
238.0 |
240.1 |
O5 |
C1 |
O1 |
HO1 |
60.8 |
59.8 |
C4 |
C5 |
O5 |
C1 |
52.7 |
67.6 |
C6 |
C5 |
O5 |
C1 |
170.8 |
187.6 |
C1 |
O5 |
C5 |
H5 |
292.8 |
307.5 |
C2 |
C1 |
H1 |
O1 |
120.2 |
119.8 |
C2 |
C1 |
H1 |
O5 |
238.8 |
239.7 |
H1 |
C1 |
C2 |
C3 |
173.0 |
181.3 |
H1 |
C1 |
C2 |
N2 |
295.6 |
301.3 |
H1 |
C1 |
C2 |
H2 |
54.4 |
61.4 |
O1 |
C1 |
H1 |
O5 |
118.7 |
119.8 |
H1 |
C1 |
O1 |
HO1 |
299.6 |
299.9 |
H1 |
C1 |
O5 |
C5 |
187.2 |
172.3 |
C3 |
C2 |
C1 |
O1 |
295.1 |
301.2 |
C3 |
C2 |
C1 |
O5 |
51.8 |
61.2 |
C3 |
C2 |
C1 |
H1 |
173.0 |
181.3 |
C1 |
C2 |
C3 |
N2 |
121.8 |
119.9 |
C1 |
C2 |
C3 |
H2 |
240.5 |
240.1 |
N2 |
C2 |
C3 |
H2 |
118.7 |
120.2 |
C3 |
C2 |
N2 |
HN21 |
301.9 |
179.8 |
C3 |
C2 |
N2 |
HN22 |
176.7 |
293.6 |
C4 |
C3 |
C2 |
O3 |
118.4 |
120.0 |
C4 |
C3 |
C2 |
H3 |
240.0 |
240.4 |
C2 |
C3 |
C4 |
C5 |
55.3 |
53.5 |
C2 |
C3 |
C4 |
O4 |
174.3 |
173.6 |
C2 |
C3 |
C4 |
H4 |
293.2 |
293.7 |
O3 |
C3 |
C2 |
H3 |
121.7 |
120.4 |
C2 |
C3 |
O3 |
HO3 |
180.0 |
299.4 |
N2 |
C2 |
C1 |
O1 |
57.6 |
61.1 |
N2 |
C2 |
C1 |
O5 |
174.4 |
181.1 |
N2 |
C2 |
C1 |
H1 |
295.6 |
301.3 |
C1 |
C2 |
N2 |
C3 |
238.1 |
240.3 |
C1 |
C2 |
N2 |
H2 |
119.5 |
120.2 |
C3 |
C2 |
N2 |
H2 |
241.5 |
239.8 |
N2 |
C2 |
C3 |
C4 |
181.9 |
186.5 |
N2 |
C2 |
C3 |
O3 |
63.5 |
66.6 |
N2 |
C2 |
C3 |
H3 |
301.8 |
306.1 |
HN21 |
N2 |
C2 |
HN22 |
125.2 |
246.2 |
H2 |
C2 |
C1 |
O1 |
176.4 |
181.3 |
H2 |
C2 |
C1 |
O5 |
293.1 |
301.3 |
H2 |
C2 |
C1 |
H1 |
54.4 |
61.4 |
C1 |
C2 |
H2 |
C3 |
119.9 |
119.6 |
C1 |
C2 |
H2 |
N2 |
240.3 |
239.8 |
C3 |
C2 |
H2 |
N2 |
120.5 |
120.2 |
H2 |
C2 |
C3 |
C4 |
63.2 |
66.4 |
H2 |
C2 |
C3 |
O3 |
304.8 |
306.4 |
H2 |
C2 |
C3 |
H3 |
183.1 |
186.0 |
H2 |
C2 |
N2 |
HN21 |
60.5 |
300.0 |
H2 |
C2 |
N2 |
HN22 |
295.2 |
53.7 |
C4 |
C3 |
C2 |
N2 |
181.9 |
186.5 |
C4 |
C3 |
C2 |
H2 |
63.2 |
66.4 |
C2 |
C3 |
C4 |
O3 |
241.2 |
239.8 |
C2 |
C3 |
C4 |
H3 |
119.5 |
119.6 |
O3 |
C3 |
C4 |
H3 |
238.3 |
239.7 |
C4 |
C3 |
O3 |
HO3 |
59.3 |
180.0 |
C5 |
C4 |
C3 |
O4 |
241.0 |
239.9 |
C5 |
C4 |
C3 |
H4 |
122.1 |
119.8 |
C3 |
C4 |
C5 |
C6 |
192.2 |
178.8 |
C3 |
C4 |
C5 |
O5 |
309.4 |
298.9 |
C3 |
C4 |
C5 |
H5 |
70.1 |
59.0 |
O4 |
C4 |
C3 |
H4 |
241.1 |
239.9 |
C3 |
C4 |
O4 |
HO4 |
180.0 |
60.2 |
O3 |
C3 |
C2 |
N2 |
63.5 |
66.6 |
O3 |
C3 |
C2 |
H2 |
304.8 |
306.4 |
C2 |
C3 |
O3 |
C4 |
120.7 |
119.4 |
C2 |
C3 |
O3 |
H3 |
240.6 |
239.6 |
C4 |
C3 |
O3 |
H3 |
119.9 |
120.2 |
O3 |
C3 |
C4 |
C5 |
174.1 |
173.7 |
O3 |
C3 |
C4 |
O4 |
293.1 |
293.7 |
O3 |
C3 |
C4 |
H4 |
52.0 |
53.8 |
H3 |
C3 |
C2 |
N2 |
301.8 |
306.1 |
H3 |
C3 |
C2 |
H2 |
183.1 |
186.0 |
C2 |
C3 |
H3 |
C4 |
238.6 |
240.9 |
C2 |
C3 |
H3 |
O3 |
119.5 |
120.6 |
C4 |
C3 |
H3 |
O3 |
240.9 |
239.7 |
H3 |
C3 |
C4 |
C5 |
295.8 |
293.9 |
H3 |
C3 |
C4 |
O4 |
54.8 |
54.0 |
H3 |
C3 |
C4 |
H4 |
173.7 |
174.1 |
H3 |
C3 |
O3 |
HO3 |
299.4 |
59.7 |
C1 |
O5 |
C5 |
C4 |
52.7 |
67.6 |
C5 |
C4 |
C3 |
O3 |
174.1 |
173.7 |
C5 |
C4 |
C3 |
H3 |
295.8 |
293.9 |
C3 |
C4 |
C5 |
O4 |
123.0 |
120.1 |
C3 |
C4 |
C5 |
H4 |
242.1 |
240.2 |
O4 |
C4 |
C5 |
H4 |
119.0 |
120.1 |
C5 |
C4 |
O4 |
HO4 |
300.1 |
180.0 |
C6 |
C5 |
C4 |
O5 |
242.8 |
239.9 |
C6 |
C5 |
C4 |
H5 |
122.1 |
119.8 |
C4 |
C5 |
C6 |
O6 |
69.2 |
180.3 |
C4 |
C5 |
C6 |
H61 |
194.5 |
300.4 |
C4 |
C5 |
C6 |
H62 |
304.0 |
60.4 |
O5 |
C5 |
C4 |
H5 |
239.3 |
239.8 |
O4 |
C4 |
C3 |
O3 |
293.1 |
293.7 |
O4 |
C4 |
C3 |
H3 |
54.8 |
54.0 |
C3 |
C4 |
O4 |
C5 |
239.9 |
240.2 |
C3 |
C4 |
O4 |
H4 |
117.8 |
120.1 |
C5 |
C4 |
O4 |
H4 |
237.9 |
239.9 |
O4 |
C4 |
C5 |
C6 |
69.2 |
58.6 |
O4 |
C4 |
C5 |
O5 |
186.3 |
178.7 |
O4 |
C4 |
C5 |
H5 |
307.1 |
298.9 |
H4 |
C4 |
C3 |
O3 |
52.0 |
53.8 |
H4 |
C4 |
C3 |
H3 |
173.7 |
174.1 |
C3 |
C4 |
H4 |
C5 |
119.4 |
119.6 |
C3 |
C4 |
H4 |
O4 |
237.7 |
239.7 |
C5 |
C4 |
H4 |
O4 |
118.3 |
120.2 |
H4 |
C4 |
C5 |
C6 |
310.1 |
298.5 |
H4 |
C4 |
C5 |
O5 |
67.3 |
58.6 |
H4 |
C4 |
C5 |
H5 |
188.0 |
178.8 |
H4 |
C4 |
O4 |
HO4 |
62.2 |
300.1 |
C1 |
O5 |
C5 |
C6 |
170.8 |
187.6 |
C6 |
C5 |
C4 |
O4 |
69.2 |
58.6 |
C6 |
C5 |
C4 |
H4 |
310.1 |
298.5 |
C4 |
C5 |
C6 |
O5 |
119.5 |
120.3 |
C4 |
C5 |
C6 |
H5 |
240.2 |
240.3 |
O5 |
C5 |
C6 |
H5 |
120.7 |
119.9 |
O6 |
C6 |
C5 |
H61 |
234.7 |
240.0 |
O6 |
C6 |
C5 |
H62 |
125.2 |
120.0 |
C5 |
C6 |
O6 |
P |
213.8 |
180.0 |
H61 |
C6 |
C5 |
H62 |
250.5 |
240.0 |
C5 |
O5 |
C1 |
H1 |
187.2 |
172.3 |
O5 |
C5 |
C4 |
O4 |
186.3 |
178.7 |
O5 |
C5 |
C4 |
H4 |
67.3 |
58.6 |
C4 |
C5 |
O5 |
C6 |
242.0 |
239.9 |
C4 |
C5 |
O5 |
H5 |
119.9 |
120.1 |
C6 |
C5 |
O5 |
H5 |
237.9 |
240.1 |
O5 |
C5 |
C6 |
O6 |
309.7 |
60.0 |
O5 |
C5 |
C6 |
H61 |
75.0 |
180.0 |
O5 |
C5 |
C6 |
H62 |
184.5 |
300.0 |
H5 |
C5 |
C4 |
O4 |
307.1 |
298.9 |
H5 |
C5 |
C4 |
H4 |
188.0 |
178.8 |
C4 |
C5 |
H5 |
C6 |
119.8 |
119.7 |
C4 |
C5 |
H5 |
O5 |
238.8 |
239.6 |
C6 |
C5 |
H5 |
O5 |
119.0 |
119.9 |
H5 |
C5 |
C6 |
O6 |
189.1 |
300.1 |
H5 |
C5 |
C6 |
H61 |
314.4 |
60.1 |
H5 |
C5 |
C6 |
H62 |
63.8 |
180.1 |
O6 |
C6 |
C5 |
O5 |
309.7 |
60.0 |
O6 |
C6 |
C5 |
H5 |
189.1 |
300.1 |
C5 |
C6 |
O6 |
H61 |
125.3 |
120.0 |
C5 |
C6 |
O6 |
H62 |
234.8 |
240.0 |
H61 |
C6 |
O6 |
H62 |
109.5 |
120.0 |
C6 |
O6 |
P |
O1P |
297.5 |
60.1 |
C6 |
O6 |
P |
O2P |
173.4 |
180.0 |
C6 |
O6 |
P |
O3P |
52.1 |
300.0 |
H61 |
C6 |
C5 |
O5 |
75.0 |
180.0 |
H61 |
C6 |
C5 |
H5 |
314.4 |
60.1 |
C5 |
C6 |
H61 |
O6 |
237.0 |
240.0 |
C5 |
C6 |
H61 |
H62 |
118.5 |
120.0 |
O6 |
C6 |
H61 |
H62 |
241.5 |
240.1 |
H61 |
C6 |
O6 |
P |
88.5 |
59.9 |
H62 |
C6 |
C5 |
O5 |
184.5 |
300.0 |
H62 |
C6 |
C5 |
H5 |
63.8 |
180.1 |
C5 |
C6 |
H62 |
O6 |
123.0 |
120.0 |
C5 |
C6 |
H62 |
H61 |
241.5 |
240.0 |
O6 |
C6 |
H62 |
H61 |
118.6 |
120.0 |
H62 |
C6 |
O6 |
P |
339.0 |
300.0 |
HO1 |
O1 |
C1 |
O5 |
60.8 |
59.8 |
HO1 |
O1 |
C1 |
H1 |
299.6 |
299.9 |
HN21 |
N2 |
C2 |
H2 |
60.5 |
300.0 |
C2 |
N2 |
HN21 |
HN22 |
234.7 |
113.8 |
HN22 |
N2 |
C2 |
H2 |
295.2 |
53.7 |
C2 |
N2 |
HN22 |
HN21 |
124.0 |
246.2 |
HO3 |
O3 |
C3 |
H3 |
299.4 |
59.7 |
HO4 |
O4 |
C4 |
H4 |
62.2 |
300.1 |
P |
O6 |
C6 |
H61 |
88.5 |
59.9 |
P |
O6 |
C6 |
H62 |
339.0 |
300.0 |
O1P |
P |
O6 |
O2P |
124.1 |
240.1 |
O1P |
P |
O6 |
O3P |
245.5 |
120.1 |
O2P |
P |
O6 |
O3P |
121.3 |
240.0 |
O6 |
P |
O2P |
HOP2 |
180.1 |
180.1 |
O6 |
P |
O3P |
HOP3 |
180.0 |
300.0 |
O6 |
P |
O1P |
O2P |
243.5 |
120.0 |
O6 |
P |
O1P |
O3P |
116.3 |
240.0 |
O2P |
P |
O1P |
O3P |
232.8 |
120.0 |
O1P |
P |
O2P |
HOP2 |
61.7 |
300.0 |
O1P |
P |
O3P |
HOP3 |
295.5 |
180.0 |
O6 |
P |
O2P |
O1P |
118.3 |
240.1 |
O6 |
P |
O2P |
O3P |
241.8 |
120.1 |
O1P |
P |
O2P |
O3P |
123.5 |
240.0 |
O2P |
P |
O3P |
HOP3 |
64.4 |
60.0 |
O6 |
P |
O3P |
O1P |
244.5 |
120.0 |
O6 |
P |
O3P |
O2P |
115.6 |
240.0 |
O1P |
P |
O3P |
O2P |
231.1 |
119.9 |
O3P |
P |
O2P |
HOP2 |
298.3 |
60.0 |
HOP2 |
O2P |
P |
O3P |
298.3 |
60.0 |