PDB Chemical Component GLD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GLD

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.516	1.530
C1	O1	1.412	1.428
C1	O5	1.424	1.426
C1	H1	1.114	1.090
C2	C3	1.510	1.531
C2	O2	1.420	1.429
C2	H2	1.115	1.090
C3	C4	1.516	1.532
C3	O3	1.429	1.429
C3	H3	1.115	1.091
C4	C5	1.516	1.531
C4	H4	1.116	1.089
C4	H42	1.115	1.090
C5	C6	1.499	1.530
C5	O5	1.430	1.425
C5	H5	1.116	1.089
C6	H61	1.115	1.090
C6	H62	1.115	1.090
C6	H63	1.115	1.090
O1	HO1	0.950	0.967
O2	HO2	0.950	0.967
O3	HO3	0.951	0.967

Bond Angles for GLD

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O1	110.7	109.5
C2	C1	O5	115.4	109.7
C2	C1	H1	105.4	109.4
C1	C2	C3	113.9	109.0
C1	C2	O2	109.3	109.6
C1	C2	H2	107.0	109.5
O1	C1	O5	112.6	109.4
O1	C1	H1	108.7	109.4
C1	O1	HO1	110.7	106.8
O5	C1	H1	103.2	109.4
C1	O5	C5	117.1	107.6
C3	C2	O2	110.6	109.6
C3	C2	H2	105.4	109.6
C2	C3	C4	110.6	108.7
C2	C3	O3	110.8	109.8
C2	C3	H3	107.0	109.6
O2	C2	H2	110.5	109.5
C2	O2	HO2	109.2	106.9
C4	C3	O3	106.9	109.6
C4	C3	H3	110.9	109.6
C3	C4	C5	109.5	109.0
C3	C4	H4	112.2	109.6
C3	C4	H42	112.2	109.5
O3	C3	H3	110.6	109.6
C3	O3	HO3	110.9	106.8
C5	C4	H4	112.2	109.6
C5	C4	H42	112.2	109.5
C4	C5	C6	111.4	109.4
C4	C5	O5	109.7	109.7
C4	C5	H5	107.2	109.4
H4	C4	H42	98.2	109.6
C6	C5	O5	107.0	109.4
C6	C5	H5	109.9	109.3
C5	C6	H61	111.4	109.5
C5	C6	H62	111.5	109.5
C5	C6	H63	111.5	109.5
O5	C5	H5	111.6	109.5
H61	C6	H62	111.5	109.5
H61	C6	H63	111.6	109.4
H62	C6	H63	98.9	109.4

Torsion Angles for GLD

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1	C2	O5	230.6	239.9
O1	C1	C2	H1	117.4	119.8
C2	C1	O1	HO1	180.0	180.0
O5	C1	C2	H1	246.8	239.9
C2	C1	O5	C5	317.1	292.3
C3	C2	C1	O2	235.7	240.1
C3	C2	C1	H2	116.1	119.9
C1	C2	C3	C4	314.4	306.2
C1	C2	C3	O3	196.1	186.4
C1	C2	C3	H3	75.3	66.0
O2	C2	C1	H2	240.3	239.8
C1	C2	O2	HO2	180.0	60.4
C2	C1	O1	O5	130.9	120.3
C2	C1	O1	H1	244.6	240.1
O1	C1	C2	C3	268.3	301.2
O1	C1	C2	O2	32.5	61.1
O1	C1	C2	H2	152.2	181.3
O5	C1	O1	H1	113.8	119.8
O1	C1	O5	C5	85.6	52.4
C2	C1	O5	O1	231.5	239.9
C2	C1	O5	H1	114.4	120.1
O5	C1	C2	C3	37.7	61.3
O5	C1	C2	O2	161.9	181.2
O5	C1	C2	H2	281.6	301.4
O1	C1	O5	H1	242.9	240.2
O5	C1	O1	HO1	49.1	59.7
C4	C5	O5	C1	54.2	67.7
C6	C5	O5	C1	175.2	187.8
C1	O5	C5	H5	295.5	307.6
C2	C1	H1	O1	118.7	119.9
C2	C1	H1	O5	238.5	239.7
H1	C1	C2	C3	150.8	181.4
H1	C1	C2	O2	275.1	301.3
H1	C1	C2	H2	34.8	61.5
O1	C1	H1	O5	119.8	119.8
H1	C1	O1	HO1	295.3	299.9
H1	C1	O5	C5	202.7	172.2
C3	C2	C1	O1	268.3	301.2
C3	C2	C1	O5	37.7	61.3
C3	C2	C1	H1	150.8	181.4
C1	C2	C3	O2	123.5	119.9
C1	C2	C3	H2	243.0	240.1
O2	C2	C3	H2	119.5	120.2
C3	C2	O2	HO2	306.2	180.0
C4	C3	C2	O3	118.4	119.8
C4	C3	C2	H3	239.1	240.2
C2	C3	C4	C5	57.2	53.7
C2	C3	C4	H4	182.5	293.8
C2	C3	C4	H42	291.9	173.5
O3	C3	C2	H3	120.7	120.4
C2	C3	O3	HO3	180.0	299.3
O2	C2	C1	O1	32.5	61.1
O2	C2	C1	O5	161.9	181.2
O2	C2	C1	H1	275.1	301.3
C1	C2	O2	C3	233.9	240.4
C1	C2	O2	H2	117.5	120.2
C3	C2	O2	H2	243.6	239.8
O2	C2	C3	C4	190.9	186.3
O2	C2	C3	O3	72.5	66.5
O2	C2	C3	H3	311.8	306.1
H2	C2	C1	O1	152.2	181.3
H2	C2	C1	O5	281.6	301.4
H2	C2	C1	H1	34.8	61.5
C1	C2	H2	C3	121.6	119.5
C1	C2	H2	O2	241.1	239.8
C3	C2	H2	O2	119.6	120.2
H2	C2	C3	C4	71.5	66.1
H2	C2	C3	O3	313.1	306.3
H2	C2	C3	H3	192.3	185.9
H2	C2	O2	HO2	62.5	300.2
C4	C3	C2	O2	190.9	186.3
C4	C3	C2	H2	71.5	66.1
C2	C3	C4	O3	239.2	240.1
C2	C3	C4	H3	118.6	119.8
O3	C3	C4	H3	239.3	239.7
C4	C3	O3	HO3	59.4	180.0
C5	C4	C3	H4	234.7	119.9
C5	C4	C3	H42	125.3	240.2
C3	C4	C5	C6	181.0	178.6
C3	C4	C5	O5	299.3	298.7
C3	C4	C5	H5	60.7	58.8
H4	C4	C3	H42	250.6	120.3
O3	C3	C2	O2	72.5	66.5
O3	C3	C2	H2	313.1	306.3
C2	C3	O3	C4	120.6	119.3
C2	C3	O3	H3	241.4	239.6
C4	C3	O3	H3	120.8	120.3
O3	C3	C4	C5	178.0	173.7
O3	C3	C4	H4	303.2	53.8
O3	C3	C4	H42	52.7	293.5
H3	C3	C2	O2	311.8	306.1
H3	C3	C2	H2	192.3	185.9
C2	C3	H3	C4	239.3	240.8
C2	C3	H3	O3	120.9	120.5
C4	C3	H3	O3	241.6	239.7
H3	C3	C4	C5	298.6	294.0
H3	C3	C4	H4	63.9	174.1
H3	C3	C4	H42	173.3	53.8
H3	C3	O3	HO3	298.6	59.7
C1	O5	C5	C4	54.2	67.7
C5	C4	C3	O3	178.0	173.7
C5	C4	C3	H3	298.6	294.0
C3	C4	C5	H4	125.3	240.1
C3	C4	C5	H42	234.7	119.8
H4	C4	C5	H42	109.4	239.7
C6	C5	C4	O5	241.7	239.9
C6	C5	C4	H5	120.3	119.8
C4	C5	C6	H61	180.1	180.1
C4	C5	C6	H62	305.2	300.2
C4	C5	C6	H63	54.7	60.1
O5	C5	C4	H5	238.6	239.9
H4	C4	C3	O3	303.2	53.8
H4	C4	C3	H3	63.9	174.1
C3	C4	H4	C5	236.2	119.5
C3	C4	H4	H42	118.1	239.8
C5	C4	H4	H42	241.9	120.3
H4	C4	C5	C6	55.7	298.5
H4	C4	C5	O5	174.0	58.6
H4	C4	C5	H5	295.4	178.7
H42	C4	C3	O3	52.7	293.5
H42	C4	C3	H3	173.3	53.8
C3	C4	H42	C5	123.8	240.5
C3	C4	H42	H4	241.9	120.3
C5	C4	H42	H4	118.1	239.7
H42	C4	C5	C6	306.3	58.8
H42	C4	C5	O5	64.6	178.9
H42	C4	C5	H5	186.0	299.0
C1	O5	C5	C6	175.2	187.8
C6	C5	C4	H4	55.7	298.5
C6	C5	C4	H42	306.3	58.8
C4	C5	C6	O5	119.9	120.3
C4	C5	C6	H5	241.3	240.2
O5	C5	C6	H5	121.4	119.9
H61	C6	C5	H62	234.8	240.0
H61	C6	C5	H63	125.3	120.0
H62	C6	C5	H63	250.5	240.0
C5	O5	C1	H1	202.7	172.2
O5	C5	C4	H4	174.0	58.6
O5	C5	C4	H42	64.6	178.9
C4	C5	O5	C6	239.0	239.9
C4	C5	O5	H5	118.7	120.1
C6	C5	O5	H5	239.7	240.2
O5	C5	C6	H61	60.1	59.8
O5	C5	C6	H62	185.3	179.9
O5	C5	C6	H63	294.8	299.9
H5	C5	C4	H4	295.4	178.7
H5	C5	C4	H42	186.0	299.0
C4	C5	H5	C6	121.2	119.8
C4	C5	H5	O5	239.8	239.7
C6	C5	H5	O5	118.6	119.9
H5	C5	C6	H61	298.7	299.9
H5	C5	C6	H62	63.9	60.0
H5	C5	C6	H63	173.4	180.0
H61	C6	C5	O5	60.1	59.8
H61	C6	C5	H5	298.7	299.9
C5	C6	H61	H62	125.2	120.1
C5	C6	H61	H63	234.7	240.0
H62	C6	H61	H63	109.5	119.9
H62	C6	C5	O5	185.3	179.9
H62	C6	C5	H5	63.9	60.0
C5	C6	H62	H61	234.9	239.9
C5	C6	H62	H63	117.4	120.0
H61	C6	H62	H63	242.5	240.1
H63	C6	C5	O5	294.8	299.9
H63	C6	C5	H5	173.4	180.0
C5	C6	H63	H61	125.2	120.0
C5	C6	H63	H62	242.6	240.0
H61	C6	H63	H62	117.4	119.9
HO1	O1	C1	O5	49.1	59.7
HO1	O1	C1	H1	295.3	299.9
HO2	O2	C2	H2	62.5	300.2
HO3	O3	C3	H3	298.6	59.7