PDB Chemical Component GLC
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for GLC
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
1.525 |
1.531 |
C1 |
O1 |
1.350 |
1.428 |
C1 |
O5 |
1.369 |
1.429 |
C1 |
H1 |
1.100 |
1.090 |
C2 |
C3 |
1.505 |
1.532 |
C2 |
O2 |
1.415 |
1.429 |
C2 |
H2 |
1.100 |
1.091 |
C3 |
C4 |
1.497 |
1.532 |
C3 |
O3 |
1.444 |
1.429 |
C3 |
H3 |
1.100 |
1.090 |
C4 |
C5 |
1.563 |
1.530 |
C4 |
O4 |
1.463 |
1.429 |
C4 |
H4 |
1.100 |
1.091 |
C5 |
C6 |
1.543 |
1.530 |
C5 |
O5 |
1.406 |
1.429 |
C5 |
H5 |
1.100 |
1.091 |
C6 |
O6 |
1.443 |
1.429 |
C6 |
H61 |
1.100 |
1.089 |
C6 |
H62 |
1.100 |
1.090 |
O1 |
HO1 |
0.950 |
0.968 |
O2 |
HO2 |
0.950 |
0.967 |
O3 |
HO3 |
0.950 |
0.967 |
O4 |
HO4 |
0.950 |
0.967 |
O6 |
HO6 |
0.951 |
0.967 |
Bond Angles for GLC
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
O1 |
110.1 |
109.5 |
C2 |
C1 |
O5 |
116.8 |
109.4 |
C2 |
C1 |
H1 |
101.3 |
109.4 |
C1 |
C2 |
C3 |
110.8 |
109.2 |
C1 |
C2 |
O2 |
109.0 |
109.5 |
C1 |
C2 |
H2 |
108.5 |
109.6 |
O1 |
C1 |
O5 |
98.7 |
109.5 |
O1 |
C1 |
H1 |
118.7 |
109.5 |
C1 |
O1 |
HO1 |
109.5 |
114.0 |
O5 |
C1 |
H1 |
112.2 |
109.5 |
C1 |
O5 |
C5 |
125.4 |
114.1 |
C3 |
C2 |
O2 |
108.2 |
109.5 |
C3 |
C2 |
H2 |
109.3 |
109.5 |
C2 |
C3 |
C4 |
110.2 |
109.0 |
C2 |
C3 |
O3 |
106.6 |
109.5 |
C2 |
C3 |
H3 |
110.5 |
109.5 |
O2 |
C2 |
H2 |
111.1 |
109.6 |
C2 |
O2 |
HO2 |
109.5 |
114.0 |
C4 |
C3 |
O3 |
108.4 |
109.6 |
C4 |
C3 |
H3 |
108.8 |
109.6 |
C3 |
C4 |
C5 |
109.3 |
109.2 |
C3 |
C4 |
O4 |
108.3 |
109.5 |
C3 |
C4 |
H4 |
108.7 |
109.5 |
O3 |
C3 |
H3 |
112.2 |
109.6 |
C3 |
O3 |
HO3 |
109.5 |
114.0 |
C5 |
C4 |
O4 |
103.9 |
109.6 |
C5 |
C4 |
H4 |
112.7 |
109.5 |
C4 |
C5 |
C6 |
111.2 |
109.5 |
C4 |
C5 |
O5 |
110.0 |
109.4 |
C4 |
C5 |
H5 |
108.2 |
109.5 |
O4 |
C4 |
H4 |
113.7 |
109.6 |
C4 |
O4 |
HO4 |
109.5 |
114.0 |
C6 |
C5 |
O5 |
110.3 |
109.5 |
C6 |
C5 |
H5 |
107.9 |
109.5 |
C5 |
C6 |
O6 |
102.6 |
109.5 |
C5 |
C6 |
H61 |
111.8 |
109.5 |
C5 |
C6 |
H62 |
113.3 |
109.5 |
O5 |
C5 |
H5 |
109.2 |
109.4 |
O6 |
C6 |
H61 |
111.9 |
109.4 |
O6 |
C6 |
H62 |
113.3 |
109.5 |
C6 |
O6 |
HO6 |
109.5 |
114.1 |
H61 |
C6 |
H62 |
104.3 |
109.5 |
Torsion Angles for GLC
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1 |
C1 |
C2 |
O5 |
248.6 |
240.0 |
O1 |
C1 |
C2 |
H1 |
126.4 |
120.0 |
C2 |
C1 |
O1 |
HO1 |
12.7 |
180.0 |
O5 |
C1 |
C2 |
H1 |
237.8 |
240.0 |
C2 |
C1 |
O5 |
C5 |
331.7 |
298.8 |
C3 |
C2 |
C1 |
O2 |
241.1 |
240.1 |
C3 |
C2 |
C1 |
H2 |
120.0 |
119.9 |
C1 |
C2 |
C3 |
C4 |
306.4 |
303.0 |
C1 |
C2 |
C3 |
O3 |
189.0 |
183.2 |
C1 |
C2 |
C3 |
H3 |
66.8 |
62.9 |
O2 |
C2 |
C1 |
H2 |
238.9 |
239.8 |
C1 |
C2 |
O2 |
HO2 |
193.6 |
60.1 |
C2 |
C1 |
O1 |
O5 |
122.8 |
120.0 |
C2 |
C1 |
O1 |
H1 |
244.1 |
240.0 |
O1 |
C1 |
C2 |
C3 |
283.6 |
297.6 |
O1 |
C1 |
C2 |
O2 |
42.5 |
57.5 |
O1 |
C1 |
C2 |
H2 |
163.6 |
177.7 |
O5 |
C1 |
O1 |
H1 |
121.3 |
120.1 |
O1 |
C1 |
O5 |
C5 |
89.5 |
58.8 |
C2 |
C1 |
O5 |
O1 |
242.2 |
240.0 |
C2 |
C1 |
O5 |
H1 |
116.3 |
119.9 |
O5 |
C1 |
C2 |
C3 |
35.0 |
57.6 |
O5 |
C1 |
C2 |
O2 |
153.9 |
177.5 |
O5 |
C1 |
C2 |
H2 |
275.1 |
297.7 |
O1 |
C1 |
O5 |
H1 |
234.1 |
239.9 |
O5 |
C1 |
O1 |
HO1 |
249.8 |
60.1 |
C4 |
C5 |
O5 |
C1 |
35.5 |
61.1 |
C6 |
C5 |
O5 |
C1 |
158.5 |
181.2 |
C1 |
O5 |
C5 |
H5 |
276.9 |
301.2 |
C2 |
C1 |
H1 |
O1 |
120.5 |
120.0 |
C2 |
C1 |
H1 |
O5 |
234.7 |
240.1 |
H1 |
C1 |
C2 |
C3 |
157.2 |
177.6 |
H1 |
C1 |
C2 |
O2 |
276.1 |
297.5 |
H1 |
C1 |
C2 |
H2 |
37.2 |
57.7 |
O1 |
C1 |
H1 |
O5 |
114.2 |
120.1 |
H1 |
C1 |
O1 |
HO1 |
128.6 |
300.0 |
H1 |
C1 |
O5 |
C5 |
215.4 |
178.9 |
C3 |
C2 |
C1 |
O1 |
283.6 |
297.6 |
C3 |
C2 |
C1 |
O5 |
35.0 |
57.6 |
C3 |
C2 |
C1 |
H1 |
157.2 |
177.6 |
C1 |
C2 |
C3 |
O2 |
119.4 |
119.9 |
C1 |
C2 |
C3 |
H2 |
240.5 |
240.1 |
O2 |
C2 |
C3 |
H2 |
121.1 |
120.2 |
C3 |
C2 |
O2 |
HO2 |
314.2 |
179.8 |
C4 |
C3 |
C2 |
O3 |
117.5 |
119.9 |
C4 |
C3 |
C2 |
H3 |
239.7 |
240.1 |
C2 |
C3 |
C4 |
C5 |
62.4 |
56.9 |
C2 |
C3 |
C4 |
O4 |
175.0 |
176.9 |
C2 |
C3 |
C4 |
H4 |
299.0 |
297.1 |
O3 |
C3 |
C2 |
H3 |
122.2 |
120.3 |
C2 |
C3 |
O3 |
HO3 |
8.0 |
300.0 |
O2 |
C2 |
C1 |
O1 |
42.5 |
57.5 |
O2 |
C2 |
C1 |
O5 |
153.9 |
177.5 |
O2 |
C2 |
C1 |
H1 |
276.1 |
297.5 |
C1 |
C2 |
O2 |
C3 |
239.5 |
240.3 |
C1 |
C2 |
O2 |
H2 |
119.5 |
120.2 |
C3 |
C2 |
O2 |
H2 |
240.0 |
239.9 |
O2 |
C2 |
C3 |
C4 |
187.1 |
183.1 |
O2 |
C2 |
C3 |
O3 |
69.6 |
63.3 |
O2 |
C2 |
C3 |
H3 |
307.4 |
303.0 |
H2 |
C2 |
C1 |
O1 |
163.6 |
177.7 |
H2 |
C2 |
C1 |
O5 |
275.1 |
297.7 |
H2 |
C2 |
C1 |
H1 |
37.2 |
57.7 |
C1 |
C2 |
H2 |
C3 |
120.9 |
119.7 |
C1 |
C2 |
H2 |
O2 |
240.2 |
239.8 |
C3 |
C2 |
H2 |
O2 |
119.3 |
120.1 |
H2 |
C2 |
C3 |
C4 |
65.9 |
63.0 |
H2 |
C2 |
C3 |
O3 |
308.5 |
303.1 |
H2 |
C2 |
C3 |
H3 |
186.3 |
182.8 |
H2 |
C2 |
O2 |
HO2 |
74.1 |
299.9 |
C4 |
C3 |
C2 |
O2 |
187.1 |
183.1 |
C4 |
C3 |
C2 |
H2 |
65.9 |
63.0 |
C2 |
C3 |
C4 |
O3 |
243.6 |
240.1 |
C2 |
C3 |
C4 |
H3 |
121.3 |
119.8 |
O3 |
C3 |
C4 |
H3 |
237.7 |
239.7 |
C4 |
C3 |
O3 |
HO3 |
249.4 |
180.4 |
C5 |
C4 |
C3 |
O4 |
247.4 |
240.0 |
C5 |
C4 |
C3 |
H4 |
123.4 |
119.9 |
C3 |
C4 |
C5 |
C6 |
186.8 |
182.4 |
C3 |
C4 |
C5 |
O5 |
309.3 |
302.4 |
C3 |
C4 |
C5 |
H5 |
68.5 |
62.4 |
O4 |
C4 |
C3 |
H4 |
236.0 |
239.8 |
C3 |
C4 |
O4 |
HO4 |
54.1 |
60.0 |
O3 |
C3 |
C2 |
O2 |
69.6 |
63.3 |
O3 |
C3 |
C2 |
H2 |
308.5 |
303.1 |
C2 |
C3 |
O3 |
C4 |
118.6 |
119.6 |
C2 |
C3 |
O3 |
H3 |
238.8 |
239.8 |
C4 |
C3 |
O3 |
H3 |
120.2 |
120.3 |
O3 |
C3 |
C4 |
C5 |
178.8 |
176.8 |
O3 |
C3 |
C4 |
O4 |
291.4 |
296.8 |
O3 |
C3 |
C4 |
H4 |
55.4 |
56.9 |
H3 |
C3 |
C2 |
O2 |
307.4 |
303.0 |
H3 |
C3 |
C2 |
H2 |
186.3 |
182.8 |
C2 |
C3 |
H3 |
C4 |
238.9 |
240.5 |
C2 |
C3 |
H3 |
O3 |
118.9 |
120.2 |
C4 |
C3 |
H3 |
O3 |
240.0 |
239.7 |
H3 |
C3 |
C4 |
C5 |
301.1 |
297.1 |
H3 |
C3 |
C4 |
O4 |
53.7 |
57.1 |
H3 |
C3 |
C4 |
H4 |
177.7 |
177.3 |
H3 |
C3 |
O3 |
HO3 |
129.2 |
60.1 |
C1 |
O5 |
C5 |
C4 |
35.5 |
61.1 |
C5 |
C4 |
C3 |
O3 |
178.8 |
176.8 |
C5 |
C4 |
C3 |
H3 |
301.1 |
297.1 |
C3 |
C4 |
C5 |
O4 |
115.4 |
119.9 |
C3 |
C4 |
C5 |
H4 |
239.0 |
240.1 |
O4 |
C4 |
C5 |
H4 |
123.6 |
120.2 |
C5 |
C4 |
O4 |
HO4 |
170.3 |
179.7 |
C6 |
C5 |
C4 |
O5 |
237.6 |
240.0 |
C6 |
C5 |
C4 |
H5 |
118.4 |
120.0 |
C4 |
C5 |
C6 |
O6 |
189.9 |
185.0 |
C4 |
C5 |
C6 |
H61 |
309.9 |
305.0 |
C4 |
C5 |
C6 |
H62 |
67.4 |
65.0 |
O5 |
C5 |
C4 |
H5 |
240.8 |
240.0 |
O4 |
C4 |
C3 |
O3 |
291.4 |
296.8 |
O4 |
C4 |
C3 |
H3 |
53.7 |
57.1 |
C3 |
C4 |
O4 |
C5 |
243.8 |
240.3 |
C3 |
C4 |
O4 |
H4 |
120.9 |
120.1 |
C5 |
C4 |
O4 |
H4 |
237.1 |
239.8 |
O4 |
C4 |
C5 |
C6 |
71.4 |
62.5 |
O4 |
C4 |
C5 |
O5 |
193.8 |
182.5 |
O4 |
C4 |
C5 |
H5 |
313.0 |
302.4 |
H4 |
C4 |
C3 |
O3 |
55.4 |
56.9 |
H4 |
C4 |
C3 |
H3 |
177.7 |
177.3 |
C3 |
C4 |
H4 |
C5 |
121.4 |
119.7 |
C3 |
C4 |
H4 |
O4 |
239.3 |
239.9 |
C5 |
C4 |
H4 |
O4 |
118.0 |
120.2 |
H4 |
C4 |
C5 |
C6 |
307.8 |
302.3 |
H4 |
C4 |
C5 |
O5 |
70.3 |
62.3 |
H4 |
C4 |
C5 |
H5 |
189.5 |
182.2 |
H4 |
C4 |
O4 |
HO4 |
293.2 |
299.9 |
C1 |
O5 |
C5 |
C6 |
158.5 |
181.2 |
C6 |
C5 |
C4 |
O4 |
71.4 |
62.5 |
C6 |
C5 |
C4 |
H4 |
307.8 |
302.3 |
C4 |
C5 |
C6 |
O5 |
122.3 |
120.0 |
C4 |
C5 |
C6 |
H5 |
241.5 |
240.0 |
O5 |
C5 |
C6 |
H5 |
119.2 |
120.0 |
O6 |
C6 |
C5 |
H61 |
240.0 |
240.0 |
O6 |
C6 |
C5 |
H62 |
122.5 |
120.0 |
C5 |
C6 |
O6 |
HO6 |
99.2 |
180.1 |
H61 |
C6 |
C5 |
H62 |
242.5 |
240.0 |
C5 |
O5 |
C1 |
H1 |
215.4 |
178.9 |
O5 |
C5 |
C4 |
O4 |
193.8 |
182.5 |
O5 |
C5 |
C4 |
H4 |
70.3 |
62.3 |
C4 |
C5 |
O5 |
C6 |
237.0 |
240.0 |
C4 |
C5 |
O5 |
H5 |
118.6 |
120.0 |
C6 |
C5 |
O5 |
H5 |
241.6 |
240.0 |
O5 |
C5 |
C6 |
O6 |
67.6 |
65.0 |
O5 |
C5 |
C6 |
H61 |
187.6 |
185.0 |
O5 |
C5 |
C6 |
H62 |
305.1 |
305.0 |
H5 |
C5 |
C4 |
O4 |
313.0 |
302.4 |
H5 |
C5 |
C4 |
H4 |
189.5 |
182.2 |
C4 |
C5 |
H5 |
C6 |
120.4 |
120.0 |
C4 |
C5 |
H5 |
O5 |
240.3 |
240.0 |
C6 |
C5 |
H5 |
O5 |
119.9 |
120.0 |
H5 |
C5 |
C6 |
O6 |
308.4 |
305.1 |
H5 |
C5 |
C6 |
H61 |
68.4 |
65.1 |
H5 |
C5 |
C6 |
H62 |
185.9 |
185.1 |
O6 |
C6 |
C5 |
O5 |
67.6 |
65.0 |
O6 |
C6 |
C5 |
H5 |
308.4 |
305.1 |
C5 |
C6 |
O6 |
H61 |
120.0 |
120.0 |
C5 |
C6 |
O6 |
H62 |
237.5 |
240.0 |
H61 |
C6 |
O6 |
H62 |
117.5 |
119.9 |
H61 |
C6 |
C5 |
O5 |
187.6 |
185.0 |
H61 |
C6 |
C5 |
H5 |
68.4 |
65.1 |
C5 |
C6 |
H61 |
O6 |
245.6 |
240.0 |
C5 |
C6 |
H61 |
H62 |
122.8 |
120.0 |
O6 |
C6 |
H61 |
H62 |
237.2 |
240.1 |
H61 |
C6 |
O6 |
HO6 |
339.2 |
60.0 |
H62 |
C6 |
C5 |
O5 |
305.1 |
305.0 |
H62 |
C6 |
C5 |
H5 |
185.9 |
185.1 |
C5 |
C6 |
H62 |
O6 |
116.3 |
120.0 |
C5 |
C6 |
H62 |
H61 |
238.2 |
240.0 |
O6 |
C6 |
H62 |
H61 |
121.9 |
119.9 |
H62 |
C6 |
O6 |
HO6 |
221.7 |
300.1 |
HO1 |
O1 |
C1 |
O5 |
249.8 |
60.1 |
HO1 |
O1 |
C1 |
H1 |
128.6 |
300.0 |
HO2 |
O2 |
C2 |
H2 |
74.1 |
299.9 |
HO3 |
O3 |
C3 |
H3 |
129.2 |
60.1 |
HO4 |
O4 |
C4 |
H4 |
293.2 |
299.9 |
HO6 |
O6 |
C6 |
H61 |
339.2 |
60.0 |
HO6 |
O6 |
C6 |
H62 |
221.7 |
300.1 |