PDB Chemical Component GLA
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for GLA
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
1.514 |
1.530 |
C1 |
O1 |
1.405 |
1.429 |
C1 |
O5 |
1.451 |
1.425 |
C1 |
H1 |
1.114 |
1.090 |
C2 |
C3 |
1.514 |
1.532 |
C2 |
O2 |
1.460 |
1.429 |
C2 |
H2 |
1.115 |
1.089 |
C3 |
C4 |
1.561 |
1.533 |
C3 |
O3 |
1.410 |
1.429 |
C3 |
H3 |
1.115 |
1.090 |
C4 |
C5 |
1.502 |
1.530 |
C4 |
O4 |
1.470 |
1.428 |
C4 |
H4 |
1.115 |
1.090 |
C5 |
C6 |
1.531 |
1.530 |
C5 |
O5 |
1.415 |
1.425 |
C5 |
H5 |
1.116 |
1.090 |
C6 |
O6 |
1.391 |
1.428 |
C6 |
H61 |
1.116 |
1.089 |
C6 |
H62 |
1.115 |
1.090 |
O1 |
HO1 |
0.950 |
0.967 |
O2 |
HO2 |
0.950 |
0.968 |
O3 |
HO3 |
0.951 |
0.967 |
O4 |
HO4 |
0.950 |
0.966 |
O6 |
HO6 |
0.950 |
0.967 |
Bond Angles for GLA
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
O1 |
109.6 |
109.4 |
C2 |
C1 |
O5 |
109.6 |
109.8 |
C2 |
C1 |
H1 |
109.1 |
109.4 |
C1 |
C2 |
C3 |
112.4 |
109.0 |
C1 |
C2 |
O2 |
109.7 |
109.6 |
C1 |
C2 |
H2 |
107.6 |
109.5 |
O1 |
C1 |
O5 |
108.7 |
109.4 |
O1 |
C1 |
H1 |
109.9 |
109.4 |
C1 |
O1 |
HO1 |
109.6 |
106.8 |
O5 |
C1 |
H1 |
110.0 |
109.4 |
C1 |
O5 |
C5 |
116.8 |
107.7 |
C3 |
C2 |
O2 |
110.2 |
109.6 |
C3 |
C2 |
H2 |
107.0 |
109.6 |
C2 |
C3 |
C4 |
109.8 |
108.6 |
C2 |
C3 |
O3 |
110.6 |
109.6 |
C2 |
C3 |
H3 |
108.7 |
109.7 |
O2 |
C2 |
H2 |
109.8 |
109.5 |
C2 |
O2 |
HO2 |
109.7 |
106.8 |
C4 |
C3 |
O3 |
109.8 |
109.7 |
C4 |
C3 |
H3 |
109.4 |
109.6 |
C3 |
C4 |
C5 |
109.1 |
109.0 |
C3 |
C4 |
O4 |
108.9 |
109.5 |
C3 |
C4 |
H4 |
111.6 |
109.6 |
O3 |
C3 |
H3 |
108.6 |
109.6 |
C3 |
O3 |
HO3 |
110.6 |
106.8 |
C5 |
C4 |
O4 |
113.9 |
109.7 |
C5 |
C4 |
H4 |
106.6 |
109.5 |
C4 |
C5 |
C6 |
108.2 |
109.4 |
C4 |
C5 |
O5 |
111.6 |
109.8 |
C4 |
C5 |
H5 |
107.9 |
109.4 |
O4 |
C4 |
H4 |
106.7 |
109.5 |
C4 |
O4 |
HO4 |
108.9 |
106.9 |
C6 |
C5 |
O5 |
106.6 |
109.4 |
C6 |
C5 |
H5 |
112.9 |
109.4 |
C5 |
C6 |
O6 |
104.0 |
109.5 |
C5 |
C6 |
H61 |
114.3 |
109.5 |
C5 |
C6 |
H62 |
114.3 |
109.5 |
O5 |
C5 |
H5 |
109.6 |
109.4 |
O6 |
C6 |
H61 |
114.3 |
109.5 |
O6 |
C6 |
H62 |
114.3 |
109.4 |
C6 |
O6 |
HO6 |
104.0 |
106.9 |
H61 |
C6 |
H62 |
96.2 |
109.5 |
Torsion Angles for GLA
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1 |
C1 |
C2 |
O5 |
240.8 |
239.9 |
O1 |
C1 |
C2 |
H1 |
120.4 |
119.8 |
C2 |
C1 |
O1 |
HO1 |
180.0 |
180.3 |
O5 |
C1 |
C2 |
H1 |
239.6 |
239.9 |
C2 |
C1 |
O5 |
C5 |
305.7 |
292.4 |
C3 |
C2 |
C1 |
O2 |
237.0 |
240.1 |
C3 |
C2 |
C1 |
H2 |
117.6 |
119.9 |
C1 |
C2 |
C3 |
C4 |
305.9 |
306.2 |
C1 |
C2 |
C3 |
O3 |
184.6 |
186.4 |
C1 |
C2 |
C3 |
H3 |
65.5 |
66.0 |
O2 |
C2 |
C1 |
H2 |
240.6 |
239.8 |
C1 |
C2 |
O2 |
HO2 |
180.0 |
60.0 |
C2 |
C1 |
O1 |
O5 |
119.7 |
120.3 |
C2 |
C1 |
O1 |
H1 |
240.1 |
240.2 |
O1 |
C1 |
C2 |
C3 |
292.9 |
301.2 |
O1 |
C1 |
C2 |
O2 |
55.9 |
61.1 |
O1 |
C1 |
C2 |
H2 |
175.3 |
181.3 |
O5 |
C1 |
O1 |
H1 |
120.4 |
119.9 |
O1 |
C1 |
O5 |
C5 |
65.4 |
52.5 |
C2 |
C1 |
O5 |
O1 |
240.3 |
240.0 |
C2 |
C1 |
O5 |
H1 |
119.9 |
120.1 |
O5 |
C1 |
C2 |
C3 |
52.0 |
61.3 |
O5 |
C1 |
C2 |
O2 |
175.0 |
181.2 |
O5 |
C1 |
C2 |
H2 |
294.5 |
301.3 |
O1 |
C1 |
O5 |
H1 |
239.6 |
240.2 |
O5 |
C1 |
O1 |
HO1 |
60.3 |
60.0 |
C4 |
C5 |
O5 |
C1 |
57.5 |
67.6 |
C6 |
C5 |
O5 |
C1 |
175.5 |
187.7 |
C1 |
O5 |
C5 |
H5 |
298.0 |
307.6 |
C2 |
C1 |
H1 |
O1 |
120.2 |
119.8 |
C2 |
C1 |
H1 |
O5 |
239.8 |
239.7 |
H1 |
C1 |
C2 |
C3 |
172.5 |
181.4 |
H1 |
C1 |
C2 |
O2 |
295.5 |
301.3 |
H1 |
C1 |
C2 |
H2 |
54.9 |
61.5 |
O1 |
C1 |
H1 |
O5 |
119.6 |
119.9 |
H1 |
C1 |
O1 |
HO1 |
299.8 |
300.1 |
H1 |
C1 |
O5 |
C5 |
185.8 |
172.3 |
C3 |
C2 |
C1 |
O1 |
292.9 |
301.2 |
C3 |
C2 |
C1 |
O5 |
52.0 |
61.3 |
C3 |
C2 |
C1 |
H1 |
172.5 |
181.4 |
C1 |
C2 |
C3 |
O2 |
122.7 |
119.9 |
C1 |
C2 |
C3 |
H2 |
242.1 |
240.2 |
O2 |
C2 |
C3 |
H2 |
119.4 |
120.3 |
C3 |
C2 |
O2 |
HO2 |
304.3 |
179.6 |
C4 |
C3 |
C2 |
O3 |
121.3 |
119.8 |
C4 |
C3 |
C2 |
H3 |
240.4 |
240.2 |
C2 |
C3 |
C4 |
C5 |
54.4 |
53.8 |
C2 |
C3 |
C4 |
O4 |
289.5 |
293.8 |
C2 |
C3 |
C4 |
H4 |
171.9 |
173.6 |
O3 |
C3 |
C2 |
H3 |
119.1 |
120.4 |
C2 |
C3 |
O3 |
HO3 |
180.0 |
300.0 |
O2 |
C2 |
C1 |
O1 |
55.9 |
61.1 |
O2 |
C2 |
C1 |
O5 |
175.0 |
181.2 |
O2 |
C2 |
C1 |
H1 |
295.5 |
301.3 |
C1 |
C2 |
O2 |
C3 |
235.8 |
240.5 |
C1 |
C2 |
O2 |
H2 |
118.1 |
120.1 |
C3 |
C2 |
O2 |
H2 |
242.3 |
239.7 |
O2 |
C2 |
C3 |
C4 |
183.2 |
186.3 |
O2 |
C2 |
C3 |
O3 |
61.9 |
66.5 |
O2 |
C2 |
C3 |
H3 |
302.8 |
306.1 |
H2 |
C2 |
C1 |
O1 |
175.3 |
181.3 |
H2 |
C2 |
C1 |
O5 |
294.5 |
301.3 |
H2 |
C2 |
C1 |
H1 |
54.9 |
61.5 |
C1 |
C2 |
H2 |
C3 |
121.0 |
119.5 |
C1 |
C2 |
H2 |
O2 |
240.6 |
239.8 |
C3 |
C2 |
H2 |
O2 |
119.7 |
120.3 |
H2 |
C2 |
C3 |
C4 |
63.8 |
66.1 |
H2 |
C2 |
C3 |
O3 |
302.5 |
306.2 |
H2 |
C2 |
C3 |
H3 |
183.4 |
185.9 |
H2 |
C2 |
O2 |
HO2 |
62.0 |
299.9 |
C4 |
C3 |
C2 |
O2 |
183.2 |
186.3 |
C4 |
C3 |
C2 |
H2 |
63.8 |
66.1 |
C2 |
C3 |
C4 |
O3 |
238.2 |
240.3 |
C2 |
C3 |
C4 |
H3 |
119.2 |
119.8 |
O3 |
C3 |
C4 |
H3 |
240.9 |
239.6 |
C4 |
C3 |
O3 |
HO3 |
58.7 |
180.8 |
C5 |
C4 |
C3 |
O4 |
124.8 |
120.0 |
C5 |
C4 |
C3 |
H4 |
242.5 |
240.2 |
C3 |
C4 |
C5 |
C6 |
187.9 |
178.6 |
C3 |
C4 |
C5 |
O5 |
304.9 |
298.7 |
C3 |
C4 |
C5 |
H5 |
65.4 |
58.7 |
O4 |
C4 |
C3 |
H4 |
117.6 |
120.2 |
C3 |
C4 |
O4 |
HO4 |
180.0 |
299.9 |
O3 |
C3 |
C2 |
O2 |
61.9 |
66.5 |
O3 |
C3 |
C2 |
H2 |
302.5 |
306.2 |
C2 |
C3 |
O3 |
C4 |
121.3 |
119.2 |
C2 |
C3 |
O3 |
H3 |
240.9 |
239.6 |
C4 |
C3 |
O3 |
H3 |
119.6 |
120.4 |
O3 |
C3 |
C4 |
C5 |
176.2 |
173.6 |
O3 |
C3 |
C4 |
O4 |
51.3 |
53.5 |
O3 |
C3 |
C4 |
H4 |
293.7 |
293.3 |
H3 |
C3 |
C2 |
O2 |
302.8 |
306.1 |
H3 |
C3 |
C2 |
H2 |
183.4 |
185.9 |
C2 |
C3 |
H3 |
C4 |
240.2 |
240.8 |
C2 |
C3 |
H3 |
O3 |
120.3 |
120.3 |
C4 |
C3 |
H3 |
O3 |
240.2 |
239.5 |
H3 |
C3 |
C4 |
C5 |
295.2 |
294.0 |
H3 |
C3 |
C4 |
O4 |
170.4 |
174.0 |
H3 |
C3 |
C4 |
H4 |
52.7 |
53.8 |
H3 |
C3 |
O3 |
HO3 |
299.1 |
60.4 |
C1 |
O5 |
C5 |
C4 |
57.5 |
67.6 |
C5 |
C4 |
C3 |
O3 |
176.2 |
173.6 |
C5 |
C4 |
C3 |
H3 |
295.2 |
294.0 |
C3 |
C4 |
C5 |
O4 |
238.1 |
240.1 |
C3 |
C4 |
C5 |
H4 |
120.7 |
119.8 |
O4 |
C4 |
C5 |
H4 |
242.6 |
239.8 |
C5 |
C4 |
O4 |
HO4 |
58.0 |
180.3 |
C6 |
C5 |
C4 |
O5 |
243.0 |
239.9 |
C6 |
C5 |
C4 |
H5 |
122.5 |
119.8 |
C4 |
C5 |
C6 |
O6 |
192.3 |
180.2 |
C4 |
C5 |
C6 |
H61 |
317.6 |
60.2 |
C4 |
C5 |
C6 |
H62 |
67.0 |
300.2 |
O5 |
C5 |
C4 |
H5 |
239.5 |
240.0 |
O4 |
C4 |
C3 |
O3 |
51.3 |
53.5 |
O4 |
C4 |
C3 |
H3 |
170.4 |
174.0 |
C3 |
C4 |
O4 |
C5 |
122.0 |
119.6 |
C3 |
C4 |
O4 |
H4 |
239.3 |
239.8 |
C5 |
C4 |
O4 |
H4 |
117.3 |
120.2 |
O4 |
C4 |
C5 |
C6 |
309.8 |
298.5 |
O4 |
C4 |
C5 |
O5 |
66.8 |
58.6 |
O4 |
C4 |
C5 |
H5 |
187.3 |
178.7 |
H4 |
C4 |
C3 |
O3 |
293.7 |
293.3 |
H4 |
C4 |
C3 |
H3 |
52.7 |
53.8 |
C3 |
C4 |
H4 |
C5 |
240.9 |
240.5 |
C3 |
C4 |
H4 |
O4 |
118.9 |
120.2 |
C5 |
C4 |
H4 |
O4 |
238.0 |
239.7 |
H4 |
C4 |
C5 |
C6 |
67.2 |
58.7 |
H4 |
C4 |
C5 |
O5 |
184.2 |
178.9 |
H4 |
C4 |
C5 |
H5 |
304.7 |
298.9 |
H4 |
C4 |
O4 |
HO4 |
300.7 |
60.1 |
C1 |
O5 |
C5 |
C6 |
175.5 |
187.7 |
C6 |
C5 |
C4 |
O4 |
309.8 |
298.5 |
C6 |
C5 |
C4 |
H4 |
67.2 |
58.7 |
C4 |
C5 |
C6 |
O5 |
120.2 |
120.3 |
C4 |
C5 |
C6 |
H5 |
240.6 |
240.2 |
O5 |
C5 |
C6 |
H5 |
120.4 |
119.9 |
O6 |
C6 |
C5 |
H61 |
234.7 |
120.0 |
O6 |
C6 |
C5 |
H62 |
125.3 |
240.0 |
C5 |
C6 |
O6 |
HO6 |
180.0 |
180.0 |
H61 |
C6 |
C5 |
H62 |
250.6 |
120.0 |
C5 |
O5 |
C1 |
H1 |
185.8 |
172.3 |
O5 |
C5 |
C4 |
O4 |
66.8 |
58.6 |
O5 |
C5 |
C4 |
H4 |
184.2 |
178.9 |
C4 |
C5 |
O5 |
C6 |
242.0 |
239.9 |
C4 |
C5 |
O5 |
H5 |
119.5 |
120.0 |
C6 |
C5 |
O5 |
H5 |
237.5 |
240.1 |
O5 |
C5 |
C6 |
O6 |
72.1 |
59.9 |
O5 |
C5 |
C6 |
H61 |
197.4 |
299.9 |
O5 |
C5 |
C6 |
H62 |
306.8 |
179.9 |
H5 |
C5 |
C4 |
O4 |
187.3 |
178.7 |
H5 |
C5 |
C4 |
H4 |
304.7 |
298.9 |
C4 |
C5 |
H5 |
C6 |
119.6 |
119.8 |
C4 |
C5 |
H5 |
O5 |
238.3 |
239.7 |
C6 |
C5 |
H5 |
O5 |
118.7 |
119.9 |
H5 |
C5 |
C6 |
O6 |
311.7 |
300.0 |
H5 |
C5 |
C6 |
H61 |
77.0 |
180.0 |
H5 |
C5 |
C6 |
H62 |
186.4 |
60.0 |
O6 |
C6 |
C5 |
O5 |
72.1 |
59.9 |
O6 |
C6 |
C5 |
H5 |
311.7 |
300.0 |
C5 |
C6 |
O6 |
H61 |
125.3 |
240.0 |
C5 |
C6 |
O6 |
H62 |
234.7 |
120.0 |
H61 |
C6 |
O6 |
H62 |
109.4 |
240.0 |
H61 |
C6 |
C5 |
O5 |
197.4 |
299.9 |
H61 |
C6 |
C5 |
H5 |
77.0 |
180.0 |
C5 |
C6 |
H61 |
O6 |
240.3 |
120.0 |
C5 |
C6 |
H61 |
H62 |
120.1 |
240.0 |
O6 |
C6 |
H61 |
H62 |
239.8 |
120.0 |
H61 |
C6 |
O6 |
HO6 |
54.7 |
300.0 |
H62 |
C6 |
C5 |
O5 |
306.8 |
179.9 |
H62 |
C6 |
C5 |
H5 |
186.4 |
60.0 |
C5 |
C6 |
H62 |
O6 |
119.7 |
240.0 |
C5 |
C6 |
H62 |
H61 |
239.9 |
120.0 |
O6 |
C6 |
H62 |
H61 |
120.1 |
240.0 |
H62 |
C6 |
O6 |
HO6 |
305.3 |
60.0 |
HO1 |
O1 |
C1 |
O5 |
60.3 |
60.0 |
HO1 |
O1 |
C1 |
H1 |
299.8 |
300.1 |
HO2 |
O2 |
C2 |
H2 |
62.0 |
299.9 |
HO3 |
O3 |
C3 |
H3 |
299.1 |
60.4 |
HO4 |
O4 |
C4 |
H4 |
300.7 |
60.1 |
HO6 |
O6 |
C6 |
H61 |
54.7 |
300.0 |
HO6 |
O6 |
C6 |
H62 |
305.3 |
60.0 |