PDB Chemical Component GK8
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for GK8
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C |
O4 |
1.389 |
1.429 |
| C |
CA |
1.504 |
1.530 |
| C |
H |
1.100 |
1.091 |
| C |
HA |
1.100 |
1.090 |
| N |
CA |
1.438 |
1.469 |
| N |
HN |
1.000 |
1.009 |
| N |
HNA |
1.000 |
1.008 |
| AS |
O1 |
1.860 |
1.840 |
| AS |
O2 |
1.860 |
1.840 |
| AS |
O3 |
1.860 |
1.840 |
| AS |
O4 |
1.801 |
1.840 |
| CA |
CB |
1.499 |
1.530 |
| CA |
HAA |
1.100 |
1.089 |
| CB |
CG |
1.500 |
1.507 |
| CB |
HB |
1.100 |
1.091 |
| CB |
HBA |
1.100 |
1.089 |
| CG |
ND1 |
1.351 |
1.369 |
| CG |
CD2 |
1.396 |
1.347 |
| ND1 |
CE1 |
1.337 |
1.350 |
| ND1 |
HND1 |
1.001 |
0.971 |
| CD2 |
NE2 |
1.346 |
1.341 |
| CD2 |
HD2 |
1.080 |
1.080 |
| CE1 |
NE2 |
1.336 |
1.305 |
| CE1 |
HE1 |
1.080 |
1.080 |
| O1 |
H11 |
0.951 |
0.967 |
| O2 |
H12 |
0.951 |
0.968 |
| O3 |
H13 |
0.950 |
0.967 |
Bond Angles for GK8
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O4 |
C |
CA |
118.2 |
109.5 |
| O4 |
C |
H |
107.2 |
109.5 |
| O4 |
C |
HA |
107.3 |
109.5 |
| C |
O4 |
AS |
118.7 |
114.0 |
| CA |
C |
H |
107.3 |
109.5 |
| CA |
C |
HA |
107.2 |
109.5 |
| C |
CA |
N |
110.5 |
109.5 |
| C |
CA |
CB |
111.9 |
109.5 |
| C |
CA |
HAA |
108.1 |
109.5 |
| H |
C |
HA |
109.5 |
109.5 |
| CA |
N |
HN |
109.5 |
110.9 |
| CA |
N |
HNA |
109.5 |
111.0 |
| N |
CA |
CB |
109.1 |
109.5 |
| N |
CA |
HAA |
109.0 |
109.5 |
| HN |
N |
HNA |
109.4 |
111.0 |
| O1 |
AS |
O2 |
114.9 |
109.5 |
| O1 |
AS |
O3 |
116.9 |
109.5 |
| O1 |
AS |
O4 |
103.2 |
109.5 |
| AS |
O1 |
H11 |
109.5 |
114.0 |
| O2 |
AS |
O3 |
112.2 |
109.4 |
| O2 |
AS |
O4 |
103.0 |
109.5 |
| AS |
O2 |
H12 |
109.5 |
114.0 |
| O3 |
AS |
O4 |
104.6 |
109.4 |
| AS |
O3 |
H13 |
109.5 |
114.0 |
| CB |
CA |
HAA |
108.2 |
109.4 |
| CA |
CB |
CG |
119.4 |
109.5 |
| CA |
CB |
HB |
107.0 |
109.4 |
| CA |
CB |
HBA |
107.0 |
109.5 |
| CG |
CB |
HB |
107.0 |
109.5 |
| CG |
CB |
HBA |
106.9 |
109.5 |
| CB |
CG |
ND1 |
126.8 |
126.6 |
| CB |
CG |
CD2 |
126.8 |
126.6 |
| HB |
CB |
HBA |
109.4 |
109.4 |
| ND1 |
CG |
CD2 |
106.3 |
106.8 |
| CG |
ND1 |
CE1 |
109.2 |
107.2 |
| CG |
ND1 |
HND1 |
125.4 |
126.4 |
| CG |
CD2 |
NE2 |
107.0 |
108.0 |
| CG |
CD2 |
HD2 |
126.5 |
126.0 |
| CE1 |
ND1 |
HND1 |
125.4 |
126.4 |
| ND1 |
CE1 |
NE2 |
108.4 |
108.7 |
| ND1 |
CE1 |
HE1 |
125.8 |
125.7 |
| NE2 |
CD2 |
HD2 |
126.5 |
126.0 |
| CD2 |
NE2 |
CE1 |
109.1 |
109.3 |
| NE2 |
CE1 |
HE1 |
125.8 |
125.6 |
Torsion Angles for GK8
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
C |
O4 |
H |
238.8 |
240.0 |
| CA |
C |
O4 |
HA |
121.2 |
120.0 |
| O4 |
C |
CA |
N |
78.4 |
65.0 |
| O4 |
C |
CA |
CB |
200.2 |
185.0 |
| O4 |
C |
CA |
HAA |
319.2 |
305.0 |
| H |
C |
O4 |
HA |
242.5 |
240.0 |
| O1 |
AS |
O4 |
C |
281.2 |
60.0 |
| O2 |
AS |
O4 |
C |
41.1 |
300.0 |
| O3 |
AS |
O4 |
C |
158.5 |
180.0 |
| O4 |
C |
CA |
H |
121.2 |
120.0 |
| O4 |
C |
CA |
HA |
238.8 |
240.0 |
| CA |
C |
O4 |
AS |
253.6 |
180.0 |
| H |
C |
CA |
HA |
117.5 |
120.0 |
| C |
CA |
N |
HN |
180.0 |
60.0 |
| C |
CA |
N |
HNA |
300.0 |
184.0 |
| N |
CA |
C |
CB |
238.2 |
240.0 |
| N |
CA |
C |
HAA |
119.2 |
120.0 |
| CB |
CA |
C |
HAA |
241.0 |
240.0 |
| C |
CA |
CB |
CG |
83.4 |
175.0 |
| C |
CA |
CB |
HB |
204.8 |
295.0 |
| C |
CA |
CB |
HBA |
322.0 |
54.9 |
| O4 |
C |
H |
CA |
232.1 |
240.0 |
| O4 |
C |
H |
HA |
116.1 |
120.0 |
| H |
C |
O4 |
AS |
14.8 |
300.0 |
| CA |
C |
H |
HA |
244.0 |
240.0 |
| H |
C |
CA |
N |
317.2 |
305.0 |
| H |
C |
CA |
CB |
79.0 |
65.0 |
| H |
C |
CA |
HAA |
198.0 |
185.0 |
| O4 |
C |
HA |
CA |
127.9 |
120.0 |
| O4 |
C |
HA |
H |
244.0 |
240.0 |
| HA |
C |
O4 |
AS |
132.4 |
60.0 |
| CA |
C |
HA |
H |
116.1 |
120.0 |
| HA |
C |
CA |
N |
199.7 |
185.0 |
| HA |
C |
CA |
CB |
321.5 |
305.0 |
| HA |
C |
CA |
HAA |
80.5 |
65.0 |
| N |
CA |
C |
H |
317.2 |
305.0 |
| N |
CA |
C |
HA |
199.7 |
185.0 |
| C |
CA |
N |
CB |
123.4 |
120.0 |
| C |
CA |
N |
HAA |
241.3 |
240.0 |
| HN |
N |
CA |
HNA |
240.0 |
236.1 |
| CB |
CA |
N |
HAA |
117.9 |
119.9 |
| N |
CA |
CB |
CG |
206.1 |
295.0 |
| N |
CA |
CB |
HB |
327.5 |
55.0 |
| N |
CA |
CB |
HBA |
84.7 |
175.0 |
| CA |
N |
HN |
HNA |
120.0 |
123.9 |
| HN |
N |
CA |
CB |
56.6 |
300.0 |
| HN |
N |
CA |
HAA |
298.7 |
180.0 |
| CA |
N |
HNA |
HN |
240.0 |
236.1 |
| HNA |
N |
CA |
CB |
176.6 |
63.9 |
| HNA |
N |
CA |
HAA |
58.7 |
304.0 |
| C |
O4 |
AS |
O1 |
281.2 |
60.0 |
| O2 |
AS |
O1 |
O3 |
134.6 |
240.0 |
| O2 |
AS |
O1 |
O4 |
248.8 |
120.0 |
| O1 |
AS |
O2 |
H12 |
180.0 |
180.0 |
| O3 |
AS |
O1 |
O4 |
114.2 |
240.0 |
| O1 |
AS |
O3 |
H13 |
180.0 |
300.0 |
| C |
O4 |
AS |
O2 |
41.1 |
300.0 |
| O1 |
AS |
O2 |
O3 |
223.3 |
120.0 |
| O1 |
AS |
O2 |
O4 |
111.3 |
240.0 |
| O2 |
AS |
O1 |
H11 |
180.0 |
180.0 |
| O3 |
AS |
O2 |
O4 |
248.1 |
120.0 |
| O2 |
AS |
O3 |
H13 |
44.3 |
60.0 |
| C |
O4 |
AS |
O3 |
158.5 |
180.0 |
| O1 |
AS |
O3 |
O2 |
135.8 |
240.0 |
| O1 |
AS |
O3 |
O4 |
246.7 |
120.0 |
| O3 |
AS |
O1 |
H11 |
45.4 |
300.0 |
| O2 |
AS |
O3 |
O4 |
110.9 |
240.0 |
| O3 |
AS |
O2 |
H12 |
316.7 |
60.0 |
| AS |
O4 |
C |
CA |
253.6 |
180.0 |
| AS |
O4 |
C |
H |
14.8 |
300.0 |
| AS |
O4 |
C |
HA |
132.4 |
60.0 |
| O1 |
AS |
O4 |
O2 |
240.2 |
120.0 |
| O1 |
AS |
O4 |
O3 |
122.8 |
240.0 |
| O4 |
AS |
O1 |
H11 |
291.2 |
60.0 |
| O2 |
AS |
O4 |
O3 |
242.6 |
120.0 |
| O4 |
AS |
O2 |
H12 |
68.6 |
300.1 |
| O4 |
AS |
O3 |
H13 |
293.4 |
180.0 |
| CB |
CA |
C |
H |
79.0 |
65.0 |
| CB |
CA |
C |
HA |
321.5 |
305.0 |
| C |
CA |
CB |
N |
237.4 |
240.0 |
| C |
CA |
CB |
HAA |
119.0 |
120.0 |
| CB |
CA |
N |
HN |
56.6 |
300.0 |
| CB |
CA |
N |
HNA |
176.6 |
63.9 |
| N |
CA |
CB |
HAA |
241.6 |
240.0 |
| CG |
CB |
CA |
HB |
238.6 |
240.0 |
| CG |
CB |
CA |
HBA |
121.4 |
120.1 |
| CA |
CB |
CG |
ND1 |
159.2 |
95.0 |
| CA |
CB |
CG |
CD2 |
338.8 |
274.6 |
| HB |
CB |
CA |
HBA |
242.8 |
240.1 |
| HAA |
CA |
C |
H |
198.0 |
185.0 |
| HAA |
CA |
C |
HA |
80.5 |
65.0 |
| C |
CA |
HAA |
N |
120.2 |
120.0 |
| C |
CA |
HAA |
CB |
238.7 |
240.0 |
| HAA |
CA |
N |
HN |
298.7 |
180.0 |
| HAA |
CA |
N |
HNA |
58.7 |
304.0 |
| N |
CA |
HAA |
CB |
118.5 |
120.0 |
| HAA |
CA |
CB |
CG |
324.5 |
55.0 |
| HAA |
CA |
CB |
HB |
85.9 |
175.0 |
| HAA |
CA |
CB |
HBA |
203.1 |
294.9 |
| CG |
CB |
CA |
HAA |
324.5 |
55.0 |
| CA |
CB |
CG |
HB |
121.4 |
119.9 |
| CA |
CB |
CG |
HBA |
238.6 |
240.0 |
| HB |
CB |
CG |
HBA |
117.2 |
120.0 |
| ND1 |
CG |
CB |
CD2 |
180.4 |
180.4 |
| CB |
CG |
ND1 |
CE1 |
179.8 |
179.9 |
| CB |
CG |
ND1 |
HND1 |
359.8 |
359.9 |
| CB |
CG |
CD2 |
NE2 |
180.1 |
180.0 |
| CB |
CG |
CD2 |
HD2 |
0.1 |
0.0 |
| HB |
CB |
CA |
HAA |
85.9 |
175.0 |
| CA |
CB |
HB |
CG |
231.0 |
240.0 |
| CA |
CB |
HB |
HBA |
115.5 |
120.0 |
| CG |
CB |
HB |
HBA |
244.5 |
239.9 |
| HB |
CB |
CG |
ND1 |
37.8 |
335.1 |
| HB |
CB |
CG |
CD2 |
217.4 |
154.7 |
| HBA |
CB |
CA |
HAA |
203.1 |
294.9 |
| CA |
CB |
HBA |
CG |
129.0 |
120.0 |
| CA |
CB |
HBA |
HB |
244.5 |
240.1 |
| CG |
CB |
HBA |
HB |
115.5 |
120.0 |
| HBA |
CB |
CG |
ND1 |
280.6 |
215.0 |
| HBA |
CB |
CG |
CD2 |
100.2 |
34.7 |
| ND1 |
CG |
CB |
HB |
37.8 |
335.1 |
| ND1 |
CG |
CB |
HBA |
280.6 |
215.0 |
| CB |
CG |
ND1 |
CD2 |
179.7 |
179.7 |
| ND1 |
CG |
CD2 |
NE2 |
359.7 |
359.7 |
| ND1 |
CG |
CD2 |
HD2 |
179.7 |
179.7 |
| CE1 |
ND1 |
CG |
HND1 |
180.0 |
180.0 |
| CG |
ND1 |
CE1 |
NE2 |
0.1 |
359.9 |
| CG |
ND1 |
CE1 |
HE1 |
180.1 |
180.0 |
| CD2 |
CG |
CB |
HB |
217.4 |
154.7 |
| CD2 |
CG |
CB |
HBA |
100.2 |
34.7 |
| CB |
CG |
CD2 |
ND1 |
180.3 |
180.3 |
| CD2 |
CG |
ND1 |
CE1 |
0.1 |
0.2 |
| CD2 |
CG |
ND1 |
HND1 |
180.1 |
180.2 |
| NE2 |
CD2 |
CG |
HD2 |
180.0 |
180.0 |
| CG |
CD2 |
NE2 |
CE1 |
0.3 |
0.2 |
| CE1 |
ND1 |
CG |
CD2 |
0.1 |
0.2 |
| CG |
ND1 |
CE1 |
HND1 |
180.0 |
180.0 |
| CD2 |
NE2 |
CE1 |
ND1 |
359.7 |
360.0 |
| NE2 |
CE1 |
ND1 |
HE1 |
180.0 |
179.9 |
| HND1 |
ND1 |
CG |
CD2 |
180.1 |
180.2 |
| CG |
ND1 |
HND1 |
CE1 |
180.0 |
180.0 |
| HND1 |
ND1 |
CE1 |
NE2 |
180.1 |
179.9 |
| HND1 |
ND1 |
CE1 |
HE1 |
0.1 |
0.0 |
| CG |
CD2 |
NE2 |
HD2 |
180.0 |
180.0 |
| ND1 |
CE1 |
NE2 |
CD2 |
359.7 |
360.0 |
| CD2 |
NE2 |
CE1 |
HE1 |
179.7 |
179.8 |
| CG |
CD2 |
HD2 |
NE2 |
180.0 |
180.0 |
| HD2 |
CD2 |
NE2 |
CE1 |
180.3 |
180.2 |
| NE2 |
CE1 |
ND1 |
HND1 |
180.1 |
179.9 |
| ND1 |
CE1 |
NE2 |
HE1 |
180.0 |
180.1 |
| CE1 |
NE2 |
CD2 |
HD2 |
180.3 |
180.2 |
| HE1 |
CE1 |
ND1 |
HND1 |
0.1 |
0.0 |
| ND1 |
CE1 |
HE1 |
NE2 |
180.0 |
179.8 |
| H11 |
O1 |
AS |
O2 |
180.0 |
180.0 |
| H11 |
O1 |
AS |
O3 |
45.4 |
300.0 |
| H11 |
O1 |
AS |
O4 |
291.2 |
60.0 |
| H12 |
O2 |
AS |
O3 |
316.7 |
60.0 |
| H12 |
O2 |
AS |
O4 |
68.6 |
300.1 |
| H13 |
O3 |
AS |
O4 |
293.4 |
180.0 |