PDB Chemical Component GJ1
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for GJ1
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.528 |
1.507 |
| C3 |
C2 |
1.428 |
1.381 |
| C3 |
C4 |
1.426 |
1.388 |
| C2 |
C7 |
1.443 |
1.387 |
| O8 |
C4 |
1.411 |
1.359 |
| O8 |
C9 |
1.452 |
1.429 |
| C4 |
C5 |
1.436 |
1.386 |
| O19 |
C18 |
1.445 |
1.428 |
| C7 |
O10 |
1.420 |
1.360 |
| C7 |
C6 |
1.435 |
1.387 |
| O10 |
C11 |
1.452 |
1.429 |
| C15 |
C14 |
1.416 |
1.385 |
| C15 |
C16 |
1.426 |
1.382 |
| C14 |
C13 |
1.415 |
1.387 |
| C18 |
C16 |
1.537 |
1.507 |
| C16 |
N17 |
1.383 |
1.318 |
| C13 |
C12 |
1.424 |
1.383 |
| N17 |
C12 |
1.382 |
1.319 |
| C12 |
C11 |
1.533 |
1.507 |
| C5 |
C6 |
1.417 |
1.382 |
| C6 |
H1 |
1.080 |
1.080 |
| C5 |
H2 |
1.079 |
1.081 |
| C13 |
H3 |
1.080 |
1.080 |
| C11 |
H4 |
1.100 |
1.090 |
| C11 |
H5 |
1.100 |
1.089 |
| C1 |
H6 |
1.100 |
1.090 |
| C1 |
H7 |
1.100 |
1.089 |
| C1 |
H8 |
1.099 |
1.090 |
| C3 |
H9 |
1.080 |
1.080 |
| C9 |
H10 |
1.100 |
1.090 |
| C9 |
H11 |
1.100 |
1.091 |
| C9 |
H12 |
1.100 |
1.091 |
| C14 |
H13 |
1.080 |
1.080 |
| C15 |
H14 |
1.080 |
1.080 |
| C18 |
H15 |
1.100 |
1.090 |
| C18 |
H16 |
1.100 |
1.091 |
| O19 |
H17 |
0.950 |
0.968 |
Bond Angles for GJ1
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C7 |
O10 |
118.6 |
120.0 |
| O8 |
C9 |
H10 |
109.5 |
109.5 |
| O8 |
C9 |
H11 |
109.5 |
109.5 |
| O8 |
C9 |
H12 |
109.5 |
109.4 |
| C4 |
C5 |
H2 |
119.9 |
120.0 |
| O19 |
C18 |
H15 |
109.3 |
109.5 |
| O19 |
C18 |
H16 |
109.4 |
109.5 |
| C6 |
C7 |
O10 |
122.2 |
120.0 |
| C7 |
O10 |
C11 |
124.3 |
117.0 |
| C7 |
C6 |
H1 |
119.6 |
120.0 |
| O10 |
C11 |
H4 |
109.8 |
109.4 |
| O10 |
C11 |
H5 |
109.8 |
109.5 |
| C15 |
C14 |
H13 |
120.0 |
120.8 |
| C15 |
C16 |
N17 |
119.5 |
120.8 |
| C16 |
C15 |
H14 |
120.3 |
120.4 |
| C14 |
C13 |
H3 |
120.3 |
120.5 |
| C13 |
C12 |
C11 |
119.3 |
119.6 |
| C12 |
C13 |
H3 |
120.3 |
120.4 |
| C12 |
C11 |
H4 |
109.7 |
109.4 |
| C12 |
C11 |
H5 |
109.8 |
109.4 |
| C5 |
C6 |
H1 |
119.6 |
120.0 |
| H4 |
C11 |
H5 |
109.5 |
109.5 |
| H6 |
C1 |
H7 |
109.5 |
109.5 |
| H6 |
C1 |
H8 |
109.5 |
109.5 |
| H7 |
C1 |
H8 |
109.5 |
109.5 |
| H10 |
C9 |
H11 |
109.5 |
109.5 |
| H10 |
C9 |
H12 |
109.4 |
109.5 |
| H11 |
C9 |
H12 |
109.5 |
109.4 |
| H15 |
C18 |
H16 |
109.5 |
109.5 |
Torsion Angles for GJ1
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1 |
C2 |
C7 |
O10 |
0.5 |
360.0 |
| C3 |
C2 |
C7 |
O10 |
180.8 |
179.7 |
| C3 |
C4 |
C5 |
H2 |
180.1 |
180.0 |
| C6 |
C7 |
C2 |
O10 |
179.4 |
179.8 |
| C2 |
C7 |
O10 |
C11 |
160.2 |
179.8 |
| C2 |
C7 |
C6 |
H1 |
179.8 |
180.2 |
| O8 |
C4 |
C5 |
H2 |
0.3 |
0.0 |
| H10 |
C9 |
O8 |
H11 |
240.0 |
239.9 |
| H10 |
C9 |
O8 |
H12 |
120.0 |
120.0 |
| H11 |
C9 |
O8 |
H12 |
240.0 |
240.1 |
| C4 |
C5 |
C6 |
H1 |
180.0 |
180.1 |
| H15 |
C18 |
O19 |
H16 |
240.1 |
120.0 |
| O10 |
C7 |
C6 |
H1 |
359.2 |
360.0 |
| C7 |
O10 |
C11 |
H4 |
302.4 |
299.9 |
| C7 |
O10 |
C11 |
H5 |
62.7 |
60.0 |
| C2 |
C7 |
C6 |
O10 |
180.6 |
180.2 |
| C6 |
C7 |
O10 |
C11 |
340.9 |
0.0 |
| C5 |
C6 |
C7 |
H1 |
180.0 |
180.0 |
| C13 |
C12 |
C11 |
O10 |
78.0 |
359.9 |
| C12 |
C11 |
O10 |
H4 |
240.2 |
240.1 |
| C12 |
C11 |
O10 |
H5 |
119.8 |
120.0 |
| H4 |
C11 |
O10 |
H5 |
239.7 |
239.9 |
| C15 |
C14 |
C13 |
H3 |
179.9 |
180.2 |
| C16 |
C15 |
C14 |
H13 |
180.0 |
180.0 |
| C12 |
C13 |
C14 |
H3 |
180.0 |
179.8 |
| C18 |
C16 |
C15 |
H14 |
0.1 |
0.1 |
| N17 |
C16 |
C15 |
H14 |
180.0 |
179.7 |
| C14 |
C13 |
C12 |
H3 |
180.0 |
180.2 |
| C13 |
C12 |
C11 |
H4 |
318.2 |
240.0 |
| C13 |
C12 |
C11 |
H5 |
197.9 |
120.0 |
| N17 |
C12 |
C13 |
H3 |
180.1 |
180.0 |
| N17 |
C12 |
C11 |
H4 |
138.3 |
60.0 |
| N17 |
C12 |
C11 |
H5 |
17.9 |
300.0 |
| O10 |
C11 |
C12 |
H4 |
119.8 |
119.9 |
| O10 |
C11 |
C12 |
H5 |
240.2 |
240.0 |
| C11 |
C12 |
C13 |
H3 |
0.1 |
0.1 |
| H4 |
C11 |
C12 |
H5 |
120.3 |
120.0 |
| C5 |
C6 |
C7 |
O10 |
179.2 |
180.0 |
| C7 |
C6 |
C5 |
H1 |
180.0 |
180.0 |
| H1 |
C6 |
C7 |
O10 |
359.2 |
360.0 |
| H2 |
C5 |
C6 |
H1 |
0.0 |
360.0 |
| H3 |
C13 |
C12 |
C11 |
0.1 |
0.1 |
| O10 |
C11 |
H4 |
H5 |
120.5 |
120.1 |
| C12 |
C11 |
H4 |
H5 |
239.5 |
240.0 |
| O10 |
C11 |
H5 |
H4 |
239.5 |
240.0 |
| C12 |
C11 |
H5 |
H4 |
120.5 |
120.0 |
| H7 |
C1 |
H6 |
H8 |
120.0 |
120.0 |
| H6 |
C1 |
H7 |
H8 |
240.0 |
240.0 |
| H6 |
C1 |
H8 |
H7 |
120.0 |
120.0 |
| O8 |
C9 |
H10 |
H11 |
120.0 |
120.0 |
| O8 |
C9 |
H10 |
H12 |
240.0 |
240.0 |
| H11 |
C9 |
H10 |
H12 |
120.0 |
120.0 |
| O8 |
C9 |
H11 |
H10 |
240.0 |
239.9 |
| O8 |
C9 |
H11 |
H12 |
120.0 |
119.9 |
| H10 |
C9 |
H11 |
H12 |
240.0 |
240.0 |
| O8 |
C9 |
H12 |
H10 |
120.0 |
120.0 |
| O8 |
C9 |
H12 |
H11 |
240.0 |
240.1 |
| H10 |
C9 |
H12 |
H11 |
120.0 |
120.0 |
| H13 |
C14 |
C13 |
H3 |
359.9 |
0.2 |
| H14 |
C15 |
C14 |
H13 |
0.0 |
360.0 |
| H14 |
C15 |
C16 |
N17 |
180.0 |
179.7 |
| O19 |
C18 |
H15 |
H16 |
119.8 |
240.0 |
| O19 |
C18 |
H16 |
H15 |
240.2 |
120.0 |
| H17 |
O19 |
C18 |
H15 |
300.1 |
60.0 |
| H17 |
O19 |
C18 |
H16 |
59.9 |
300.0 |