PDB Chemical Component GH3

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GH3

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
PG O1G 1.506 1.480
PG O2G 1.482 1.610
PG O3G 1.567 1.610
PG O3B 1.695 1.610
O2G HOG2 0.950 0.967
O3G HOG3 0.949 0.967
O3B PB 1.652 1.610
PB O1B 1.461 1.480
PB O2B 1.439 1.610
PB O3A 1.573 1.610
O2B HOB2 0.950 0.966
O3A PA 1.664 1.610
PA O1A 1.482 1.480
PA O2A 1.483 1.610
PA O5' 1.561 1.610
O2A HOA2 0.950 0.967
O5' C5' 1.423 1.429
C5' C4' 1.516 1.531
C5' H5' 1.100 1.091
C5' H5'' 1.100 1.090
C4' O4' 1.481 1.444
C4' C3' 1.556 1.545
C4' H4' 1.100 1.089
O4' C1' 1.448 1.444
C3' C2' 1.548 1.547
C3' H3'2 1.100 1.090
C3' H3' 1.100 1.090
C2' O2' 1.471 1.429
C2' C1' 1.528 1.545
C2' H2' 1.100 1.090
O2' HO2' 0.950 0.967
C1' N9 1.472 1.465
C1' H1' 1.100 1.090
N9 C8 1.368 1.365
N9 C4 1.337 1.369
C8 N7 1.305 1.301
C8 H8 1.080 1.080
N7 C5 1.380 1.356
C5 C6 1.447 1.414
C5 C4 1.401 1.400
C6 O6 1.221 1.220
C6 N1 1.402 1.351
N1 C2 1.415 1.363
N1 HN1 1.000 0.970
C2 N2 1.330 1.373
C2 N3 1.339 1.314
N2 HN21 1.000 0.970
N2 HN22 1.000 0.970
N3 C4 1.361 1.338

Bond Angles for GH3

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1G PG O2G 112.1 109.5
O1G PG O3G 106.0 109.5
O1G PG O3B 106.7 109.5
O2G PG O3G 110.9 109.4
O2G PG O3B 114.7 109.5
PG O2G HOG2 109.5 106.8
O3G PG O3B 105.9 109.5
PG O3G HOG3 109.5 106.8
PG O3B PB 126.1 106.8
O3B PB O1B 104.2 109.5
O3B PB O2B 110.6 109.5
O3B PB O3A 115.4 109.4
O1B PB O2B 111.3 109.5
O1B PB O3A 108.1 109.5
O2B PB O3A 107.2 109.5
PB O2B HOB2 109.5 106.8
PB O3A PA 130.4 106.8
O3A PA O1A 104.3 109.5
O3A PA O2A 111.4 109.5
O3A PA O5' 108.2 109.5
O1A PA O2A 119.8 109.5
O1A PA O5' 104.4 109.5
O2A PA O5' 108.2 109.5
PA O2A HOA2 109.5 106.8
PA O5' C5' 129.4 106.8
O5' C5' C4' 102.6 109.5
O5' C5' H5' 113.3 109.4
O5' C5' H5'' 111.8 109.5
C4' C5' H5' 113.3 109.5
C4' C5' H5'' 111.8 109.5
C5' C4' O4' 117.6 110.4
C5' C4' C3' 112.8 110.4
C5' C4' H4' 100.3 110.3
H5' C5' H5'' 104.3 109.5
O4' C4' C3' 107.6 104.8
O4' C4' H4' 106.3 110.4
C4' O4' C1' 107.3 105.3
C3' C4' H4' 111.9 110.4
C4' C3' C2' 102.8 104.0
C4' C3' H3'2 113.2 110.5
C4' C3' H3' 111.7 110.5
O4' C1' C2' 109.1 104.9
O4' C1' N9 106.3 110.4
O4' C1' H1' 114.0 110.4
C2' C3' H3'2 113.1 110.6
C2' C3' H3' 111.8 110.5
C3' C2' O2' 115.9 110.5
C3' C2' C1' 101.7 104.0
C3' C2' H2' 112.8 110.5
H3'2 C3' H3' 104.5 110.5
O2' C2' C1' 115.3 110.8
O2' C2' H2' 98.3 110.4
C2' O2' HO2' 109.5 106.8
C1' C2' H2' 113.4 110.5
C2' C1' N9 115.2 110.4
C2' C1' H1' 104.9 110.4
N9 C1' H1' 107.7 110.3
C1' N9 C8 132.7 126.3
C1' N9 C4 124.4 126.2
C8 N9 C4 102.9 107.5
N9 C8 N7 117.3 109.9
N9 C8 H8 121.4 125.1
N9 C4 C5 108.5 106.1
N9 C4 N3 124.1 134.2
N7 C8 H8 121.4 125.1
C8 N7 C5 102.0 109.3
N7 C5 C6 132.1 134.2
N7 C5 C4 109.3 107.3
C6 C5 C4 118.5 118.6
C5 C6 O6 129.9 120.8
C5 C6 N1 112.9 118.4
C5 C4 N3 127.4 119.7
O6 C6 N1 117.2 120.8
C6 N1 C2 124.2 120.3
C6 N1 HN1 117.9 119.8
C2 N1 HN1 117.9 119.8
N1 C2 N2 119.7 119.0
N1 C2 N3 122.6 121.9
N2 C2 N3 117.7 119.0
C2 N2 HN21 125.3 120.0
C2 N2 HN22 109.5 120.0
C2 N3 C4 114.3 121.1
HN21 N2 HN22 125.2 120.0

Torsion Angles for GH3

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2G PG O1G O3G 121.1 120.0
O2G PG O1G O3B 233.6 240.0
O1G PG O2G HOG2 108.9 300.0
O3G PG O1G O3B 112.5 120.0
O1G PG O3G HOG3 86.5 180.0
O1G PG O3B PB 227.2 45.0
O1G PG O2G O3G 241.8 240.0
O1G PG O2G O3B 121.9 120.0
O3G PG O2G O3B 240.1 240.0
O2G PG O3G HOG3 324.6 60.0
O2G PG O3B PB 352.0 165.0
O1G PG O3G O2G 121.9 120.0
O1G PG O3G O3B 246.9 240.0
O2G PG O3G O3B 125.1 120.0
O3G PG O2G HOG2 227.2 60.0
O3G PG O3B PB 114.7 285.0
O1G PG O3B O2G 235.2 240.0
O1G PG O3B O3G 112.6 120.0
O2G PG O3B O3G 237.3 240.0
O3B PG O2G HOG2 347.1 180.0
O3B PG O3G HOG3 199.6 300.0
PG O3B PB O1B 279.0 320.0
PG O3B PB O2B 38.8 80.0
PG O3B PB O3A 160.7 200.0
HOG2 O2G PG O3G 227.2 60.0
HOG2 O2G PG O3B 347.1 180.0
HOG3 O3G PG O3B 199.6 300.0
O1B PB O3B O2B 240.3 239.9
O1B PB O3B O3A 118.3 120.0
O2B PB O3B O3A 238.1 240.0
O3B PB O2B HOB2 146.6 60.0
O3B PB O3A PA 47.1 165.0
O3B PB O1B O2B 119.3 120.0
O3B PB O1B O3A 236.8 240.1
O2B PB O1B O3A 117.5 120.0
O1B PB O2B HOB2 262.0 180.0
O1B PB O3A PA 290.9 45.0
O3B PB O2B O1B 244.7 240.0
O3B PB O2B O3A 126.6 120.0
O1B PB O2B O3A 241.9 240.0
O2B PB O3A PA 170.8 285.0
O3B PB O3A O1B 116.1 120.0
O3B PB O3A O2B 236.3 240.0
O1B PB O3A O2B 120.2 120.1
O3A PB O2B HOB2 20.0 300.0
PB O3A PA O1A 211.1 320.0
PB O3A PA O2A 341.6 80.0
PB O3A PA O5' 100.4 200.0
HOB2 O2B PB O3A 20.0 300.0
O1A PA O3A O2A 229.5 240.0
O1A PA O3A O5' 110.7 120.0
O2A PA O3A O5' 241.2 240.0
O3A PA O2A HOA2 359.8 60.0
O3A PA O5' C5' 288.3 175.0
O3A PA O1A O2A 125.4 120.0
O3A PA O1A O5' 246.6 240.0
O2A PA O1A O5' 121.2 120.0
O1A PA O2A HOA2 121.7 180.0
O1A PA O5' C5' 177.6 55.0
O3A PA O2A O1A 238.1 240.0
O3A PA O2A O5' 118.8 120.0
O1A PA O2A O5' 240.7 240.0
O2A PA O5' C5' 49.0 295.0
O3A PA O5' O1A 110.6 120.0
O3A PA O5' O2A 239.2 240.0
O1A PA O5' O2A 128.6 120.0
O5' PA O2A HOA2 241.0 300.0
PA O5' C5' C4' 178.0 180.0
PA O5' C5' H5' 55.5 60.0
PA O5' C5' H5'' 298.0 300.1
HOA2 O2A PA O5' 241.0 300.0
C4' C5' O5' H5' 122.5 120.0
C4' C5' O5' H5'' 240.0 239.9
O5' C5' C4' O4' 269.8 66.5
O5' C5' C4' C3' 36.0 181.9
O5' C5' C4' H4' 155.1 304.2
H5' C5' O5' H5'' 117.5 120.0
O5' C5' C4' H5' 237.5 240.1
O5' C5' C4' H5'' 120.0 120.1
H5' C5' C4' H5'' 242.5 240.0
O4' C4' C5' C3' 233.8 244.6
O4' C4' C5' H4' 114.7 122.3
C5' C4' O4' C1' 132.9 159.4
C3' C4' C5' H4' 240.9 237.7
C5' C4' C3' C2' 205.1 217.1
C5' C4' C3' H3'2 82.7 335.8
C5' C4' C3' H3' 325.1 98.5
O5' C5' H5' C4' 116.3 120.0
O5' C5' H5' H5'' 238.2 240.0
C4' C5' H5' H5'' 121.8 120.0
H5' C5' C4' O4' 32.3 186.4
H5' C5' C4' C3' 158.5 301.9
H5' C5' C4' H4' 277.6 64.2
O5' C5' H5'' C4' 245.6 240.0
O5' C5' H5'' H5' 122.8 120.0
C4' C5' H5'' H5' 237.2 240.0
H5'' C5' C4' O4' 149.8 306.4
H5'' C5' C4' C3' 276.0 61.9
H5'' C5' C4' H4' 35.1 184.2
O4' C4' C5' H5' 32.3 186.4
O4' C4' C5' H5'' 149.8 306.4
C5' C4' O4' C3' 128.6 118.9
C5' C4' O4' H4' 248.6 237.8
C3' C4' O4' H4' 120.0 118.9
O4' C4' C3' C2' 336.5 335.9
O4' C4' C3' H3'2 214.1 94.7
O4' C4' C3' H3' 96.5 217.3
C4' O4' C1' C2' 17.5 319.5
C4' O4' C1' N9 252.8 200.7
C4' O4' C1' H1' 134.3 78.4
C3' C4' C5' H5' 158.5 301.9
C3' C4' C5' H5'' 276.0 61.9
C5' C4' C3' O4' 228.6 241.1
C5' C4' C3' H4' 112.2 122.3
O4' C4' C3' H4' 243.6 241.1
C3' C4' O4' C1' 4.2 40.5
C2' C3' C4' H3'2 122.4 241.2
C2' C3' C4' H3' 240.0 118.6
C4' C3' C2' O2' 266.3 241.2
C4' C3' C2' C1' 32.3 0.1
C4' C3' C2' H2' 154.1 118.7
H3'2 C3' C4' H3' 117.6 237.3
H4' C4' C5' H5' 277.6 64.2
H4' C4' C5' H5'' 35.1 184.2
C5' C4' H4' O4' 123.0 122.2
C5' C4' H4' C3' 240.2 237.7
O4' C4' H4' C3' 117.2 115.4
H4' C4' O4' C1' 244.2 281.7
H4' C4' C3' C2' 92.9 94.8
H4' C4' C3' H3'2 330.5 213.6
H4' C4' C3' H3' 212.9 336.2
C1' O4' C4' C3' 4.2 40.5
C1' O4' C4' H4' 244.2 281.7
C3' C2' C1' O4' 328.2 23.9
O2' C2' C1' O4' 94.5 142.6
O4' C1' C2' H2' 206.8 265.3
C2' C1' O4' N9 124.8 118.9
C2' C1' O4' H1' 243.2 241.1
N9 C1' O4' H1' 118.4 122.2
O4' C1' N9 C8 37.2 22.0
O4' C1' N9 C4 217.5 202.1
C2' C3' C4' H4' 92.9 94.8
C4' C3' C2' H3'2 237.6 118.7
C4' C3' C2' H3' 120.0 241.4
O4' C1' C2' C3' 328.2 23.9
H3'2 C3' C2' H3' 242.4 122.7
O2' C2' C3' C1' 234.1 241.1
O2' C2' C3' H2' 112.3 122.5
C3' C2' O2' HO2' 272.3 298.5
C1' C2' C3' H2' 238.2 241.4
C3' C2' C1' N9 87.6 142.7
C3' C2' C1' H1' 205.7 264.9
H3'2 C3' C4' H4' 330.5 213.6
C4' C3' H3'2 C2' 116.5 245.3
C4' C3' H3'2 H3' 238.2 122.6
C2' C3' H3'2 H3' 121.8 237.3
H3'2 C3' C2' O2' 28.8 122.5
H3'2 C3' C2' C1' 154.7 241.5
H3'2 C3' C2' H2' 276.5 0.0
H3' C3' C4' H4' 212.9 336.2
C4' C3' H3' C2' 245.4 114.6
C4' C3' H3' H3'2 122.7 237.4
C2' C3' H3' H3'2 237.3 122.8
H3' C3' C2' O2' 146.3 359.8
H3' C3' C2' C1' 272.3 118.7
H3' C3' C2' H2' 34.1 237.3
O4' C1' C2' O2' 94.5 142.6
O2' C2' C3' H3'2 28.8 122.5
O2' C2' C3' H3' 146.3 359.8
C3' C2' O2' C1' 118.7 114.7
C3' C2' O2' H2' 239.6 237.5
C1' C2' O2' H2' 120.9 122.7
O2' C2' C1' N9 213.9 261.4
O2' C2' C1' H1' 332.1 23.6
O4' C1' C2' N9 240.6 241.1
O4' C1' C2' H1' 122.5 118.9
C1' C2' C3' H3'2 154.7 241.5
C1' C2' C3' H3' 272.3 118.7
C3' C2' C1' O2' 233.7 241.3
C3' C2' C1' H2' 121.4 118.6
O2' C2' C1' H2' 247.7 237.3
C1' C2' O2' HO2' 153.6 183.8
N9 C1' C2' H1' 241.8 237.8
C2' C1' N9 C8 276.3 266.5
C2' C1' N9 C4 96.6 86.6
H2' C2' C3' H3'2 276.5 0.0
H2' C2' C3' H3' 34.1 237.3
C3' C2' H2' O2' 122.7 122.5
C3' C2' H2' C1' 245.1 245.5
O2' C2' H2' C1' 122.3 122.9
H2' C2' O2' HO2' 32.7 61.1
H2' C2' C1' N9 326.2 24.2
H2' C2' C1' H1' 84.4 146.3
HO2' O2' C2' C1' 153.6 183.8
HO2' O2' C2' H2' 32.7 61.1
O4' C1' N9 C2' 120.9 115.5
O4' C1' N9 H1' 237.5 237.7
N9 C1' C2' H2' 326.2 24.2
C2' C1' N9 H1' 116.6 122.2
C8 N9 C1' C4 179.7 180.0
C1' N9 C8 N7 180.3 180.0
C1' N9 C8 H8 0.3 0.1
C1' N9 C4 C5 180.1 180.0
C1' N9 C4 N3 359.5 359.9
O4' C1' H1' C2' 240.8 244.5
O4' C1' H1' N9 117.6 122.2
H1' C1' C2' H2' 84.4 146.3
C2' C1' H1' N9 236.9 237.8
H1' C1' N9 C8 159.8 144.3
H1' C1' N9 C4 340.0 324.3
C8 N9 C1' H1' 159.8 144.3
C1' N9 C8 C4 180.2 180.0
C8 N9 C4 C5 0.3 0.0
C8 N9 C4 N3 179.7 180.0
N7 C8 N9 H8 180.0 179.9
N9 C8 N7 C5 359.7 0.0
C4 N9 C1' H1' 340.0 324.3
C1' N9 C4 C8 179.8 180.0
C4 N9 C8 N7 0.0 360.0
C4 N9 C8 H8 180.0 180.0
N7 C5 C4 N9 359.5 0.0
C6 C5 C4 N9 180.6 180.0
C5 C4 N9 N3 180.6 180.0
C2 N3 C4 N9 179.8 180.0
N7 C8 N9 C4 0.0 360.0
N9 C8 N7 H8 180.0 180.1
C8 N7 C5 C6 179.1 180.0
C8 N7 C5 C4 0.5 360.0
H8 C8 N9 C4 180.0 180.0
N9 C8 H8 N7 180.0 179.9
H8 C8 N7 C5 179.7 180.0
N9 C4 C5 N7 359.5 0.0
C5 N7 C8 H8 179.7 180.0
C6 C5 N7 C4 178.7 180.0
N7 C5 C6 O6 1.5 360.0
N7 C5 C6 N1 180.4 179.7
N7 C5 C4 N3 180.1 180.0
N9 C4 C5 C6 180.6 180.0
N7 C5 C6 C4 181.4 180.0
C6 C5 C4 N3 1.2 0.0
O6 C6 C5 N1 181.1 180.3
C5 C6 N1 C2 0.7 0.5
C5 C6 N1 HN1 180.8 180.0
N9 C4 C5 N3 179.4 180.0
N7 C5 C4 C6 178.9 180.0
C4 C5 C6 O6 180.0 180.0
C4 C5 C6 N1 359.0 359.7
C2 N3 C4 C5 359.2 360.0
O6 C6 C5 C4 180.0 180.0
C5 C6 O6 N1 178.9 179.7
O6 C6 N1 C2 179.8 180.3
O6 C6 N1 HN1 359.8 359.7
N1 C6 C5 C4 359.0 359.7
C5 C6 N1 O6 180.9 180.3
C2 N1 C6 HN1 180.0 180.6
C6 N1 C2 N2 179.7 179.7
C6 N1 C2 N3 359.6 359.4
C6 N1 C2 HN1 180.0 179.4
N2 C2 N1 N3 180.2 180.3
N1 C2 N2 HN21 0.0 179.8
N1 C2 N2 HN22 180.0 359.4
N1 C2 N3 C4 0.4 0.3
C6 N1 HN1 C2 180.0 180.6
HN1 N1 C2 N2 359.7 0.3
HN1 N1 C2 N3 179.6 180.0
N2 C2 N1 HN1 359.7 0.3
N1 C2 N2 N3 179.8 179.7
N2 C2 N3 C4 180.2 180.0
HN21 N2 C2 HN22 180.0 180.4
N9 C4 N3 C2 179.8 180.0
C5 C4 N3 C2 359.2 360.0
N3 C2 N1 HN1 179.6 180.0
N1 C2 N3 N2 180.2 180.3
N3 C2 N2 HN21 180.2 0.1
N3 C2 N2 HN22 0.2 179.7
HN21 N2 C2 N3 180.2 0.1
C2 N2 HN21 HN22 180.0 179.6
HN22 N2 C2 N3 0.2 179.7
C2 N2 HN22 HN21 180.0 180.4
N9 C4 N3 C5 180.7 180.0