PDB Chemical Component GGB
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for GGB
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.494 |
1.469 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.009 |
| CA |
CB |
1.547 |
1.530 |
| CA |
C |
1.533 |
1.507 |
| CA |
HA |
1.100 |
1.090 |
| CB |
CG |
1.536 |
1.529 |
| CB |
HCB1 |
1.100 |
1.090 |
| CB |
HCB2 |
1.100 |
1.089 |
| CG |
OD |
1.444 |
1.428 |
| CG |
HCG1 |
1.100 |
1.090 |
| CG |
HCG2 |
1.100 |
1.090 |
| C |
O |
1.250 |
1.208 |
| C |
OXT |
1.248 |
1.342 |
| OD |
NE |
1.328 |
1.415 |
| NE |
CZ |
1.344 |
1.374 |
| NE |
HNE |
1.000 |
0.970 |
| CZ |
NH1 |
1.321 |
1.304 |
| CZ |
NH2 |
1.321 |
1.374 |
| NH1 |
HN1 |
1.000 |
0.969 |
| NH2 |
HN21 |
1.000 |
0.970 |
| NH2 |
HN22 |
1.000 |
0.970 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for GGB
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
109.5 |
106.7 |
| CA |
N |
H2 |
109.5 |
106.6 |
| N |
CA |
CB |
110.8 |
109.5 |
| N |
CA |
C |
109.3 |
109.5 |
| N |
CA |
HA |
108.8 |
109.5 |
| H |
N |
H2 |
109.5 |
106.7 |
| CB |
CA |
C |
109.6 |
109.5 |
| CB |
CA |
HA |
108.4 |
109.5 |
| CA |
CB |
CG |
116.3 |
109.5 |
| CA |
CB |
HCB1 |
105.7 |
109.4 |
| CA |
CB |
HCB2 |
107.3 |
109.5 |
| C |
CA |
HA |
109.9 |
109.4 |
| CA |
C |
O |
118.7 |
120.0 |
| CA |
C |
OXT |
118.9 |
120.0 |
| CG |
CB |
HCB1 |
105.7 |
109.5 |
| CG |
CB |
HCB2 |
107.2 |
109.5 |
| CB |
CG |
OD |
112.6 |
109.6 |
| CB |
CG |
HCG1 |
107.7 |
109.4 |
| CB |
CG |
HCG2 |
108.5 |
109.5 |
| HCB1 |
CB |
HCB2 |
114.9 |
109.5 |
| OD |
CG |
HCG1 |
107.8 |
109.5 |
| OD |
CG |
HCG2 |
108.4 |
109.5 |
| CG |
OD |
NE |
110.9 |
106.9 |
| HCG1 |
CG |
HCG2 |
112.0 |
109.4 |
| O |
C |
OXT |
122.4 |
120.0 |
| C |
OXT |
HXT |
109.5 |
120.0 |
| OD |
NE |
CZ |
120.1 |
120.1 |
| OD |
NE |
HNE |
120.0 |
119.9 |
| CZ |
NE |
HNE |
120.0 |
120.0 |
| NE |
CZ |
NH1 |
121.5 |
120.0 |
| NE |
CZ |
NH2 |
119.7 |
120.1 |
| NH1 |
CZ |
NH2 |
118.8 |
119.9 |
| CZ |
NH1 |
HN1 |
110.8 |
120.0 |
| CZ |
NH2 |
HN21 |
124.6 |
120.1 |
| CZ |
NH2 |
HN22 |
110.9 |
120.0 |
| HN21 |
NH2 |
HN22 |
124.6 |
120.0 |
Torsion Angles for GGB
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
120.0 |
113.8 |
| CB |
CA |
N |
C |
239.1 |
239.9 |
| CB |
CA |
N |
HA |
119.1 |
120.0 |
| N |
CA |
CB |
CG |
300.8 |
300.1 |
| N |
CA |
CB |
HCB1 |
183.9 |
60.0 |
| N |
CA |
CB |
HCB2 |
60.8 |
180.0 |
| C |
CA |
N |
HA |
240.0 |
240.1 |
| N |
CA |
C |
O |
349.1 |
330.0 |
| N |
CA |
C |
OXT |
169.1 |
150.0 |
| CA |
N |
H |
H2 |
240.0 |
246.3 |
| H |
N |
CA |
CB |
234.0 |
53.8 |
| H |
N |
CA |
C |
354.9 |
173.8 |
| H |
N |
CA |
HA |
115.0 |
293.8 |
| CA |
N |
H2 |
H |
120.0 |
113.8 |
| H2 |
N |
CA |
CB |
114.0 |
300.0 |
| H2 |
N |
CA |
C |
234.9 |
60.0 |
| H2 |
N |
CA |
HA |
355.0 |
180.0 |
| CB |
CA |
N |
H |
234.0 |
53.8 |
| CB |
CA |
N |
H2 |
114.0 |
300.0 |
| N |
CA |
CB |
C |
120.7 |
120.0 |
| N |
CA |
CB |
HA |
240.7 |
240.0 |
| C |
CA |
CB |
HA |
120.0 |
120.0 |
| CB |
CA |
C |
O |
110.7 |
90.0 |
| CB |
CA |
C |
OXT |
290.7 |
270.0 |
| CG |
CB |
CA |
HCB1 |
116.9 |
240.0 |
| CG |
CB |
CA |
HCB2 |
240.0 |
120.1 |
| CA |
CB |
CG |
OD |
160.5 |
180.0 |
| CA |
CB |
CG |
HCG1 |
41.8 |
300.0 |
| CA |
CB |
CG |
HCG2 |
280.4 |
59.9 |
| HCB1 |
CB |
CA |
HCB2 |
123.1 |
240.1 |
| C |
CA |
N |
H |
354.9 |
173.8 |
| C |
CA |
N |
H2 |
234.9 |
60.0 |
| N |
CA |
C |
CB |
238.4 |
240.0 |
| N |
CA |
C |
HA |
119.3 |
119.9 |
| CB |
CA |
C |
HA |
240.9 |
240.0 |
| C |
CA |
CB |
CG |
180.1 |
180.0 |
| C |
CA |
CB |
HCB1 |
63.2 |
300.0 |
| C |
CA |
CB |
HCB2 |
300.1 |
60.0 |
| O |
C |
CA |
OXT |
180.0 |
180.0 |
| CA |
C |
OXT |
HXT |
180.0 |
180.0 |
| HA |
CA |
N |
H |
115.0 |
293.8 |
| HA |
CA |
N |
H2 |
355.0 |
180.0 |
| N |
CA |
HA |
CB |
120.6 |
120.0 |
| N |
CA |
HA |
C |
240.4 |
240.1 |
| CB |
CA |
HA |
C |
119.8 |
120.0 |
| HA |
CA |
CB |
CG |
60.1 |
60.0 |
| HA |
CA |
CB |
HCB1 |
303.2 |
180.0 |
| HA |
CA |
CB |
HCB2 |
180.1 |
300.0 |
| HA |
CA |
C |
O |
229.8 |
210.0 |
| HA |
CA |
C |
OXT |
49.8 |
30.0 |
| CG |
CB |
CA |
C |
180.1 |
180.0 |
| CG |
CB |
CA |
HA |
60.1 |
60.0 |
| CA |
CB |
CG |
HCB1 |
243.1 |
120.0 |
| CA |
CB |
CG |
HCB2 |
120.0 |
240.0 |
| HCB1 |
CB |
CG |
HCB2 |
236.9 |
120.0 |
| OD |
CG |
CB |
HCG1 |
118.7 |
240.0 |
| OD |
CG |
CB |
HCG2 |
240.0 |
120.1 |
| CB |
CG |
OD |
NE |
325.7 |
180.0 |
| HCG1 |
CG |
CB |
HCG2 |
121.4 |
240.1 |
| HCB1 |
CB |
CA |
C |
63.2 |
300.0 |
| HCB1 |
CB |
CA |
HA |
303.2 |
180.0 |
| CA |
CB |
HCB1 |
CG |
123.8 |
240.0 |
| CA |
CB |
HCB1 |
HCB2 |
241.9 |
119.9 |
| CG |
CB |
HCB1 |
HCB2 |
118.1 |
240.0 |
| HCB1 |
CB |
CG |
OD |
277.4 |
60.0 |
| HCB1 |
CB |
CG |
HCG1 |
158.7 |
180.1 |
| HCB1 |
CB |
CG |
HCG2 |
37.3 |
299.9 |
| HCB2 |
CB |
CA |
C |
300.1 |
60.0 |
| HCB2 |
CB |
CA |
HA |
180.1 |
300.0 |
| CA |
CB |
HCB2 |
CG |
234.4 |
120.1 |
| CA |
CB |
HCB2 |
HCB1 |
117.2 |
240.1 |
| CG |
CB |
HCB2 |
HCB1 |
242.8 |
120.0 |
| HCB2 |
CB |
CG |
OD |
40.4 |
300.0 |
| HCB2 |
CB |
CG |
HCG1 |
281.8 |
60.1 |
| HCB2 |
CB |
CG |
HCG2 |
160.4 |
180.0 |
| OD |
CG |
CB |
HCB1 |
277.4 |
60.0 |
| OD |
CG |
CB |
HCB2 |
40.4 |
300.0 |
| CB |
CG |
OD |
HCG1 |
241.4 |
120.0 |
| CB |
CG |
OD |
HCG2 |
120.0 |
239.9 |
| HCG1 |
CG |
OD |
HCG2 |
238.6 |
119.9 |
| CG |
OD |
NE |
CZ |
177.8 |
180.0 |
| CG |
OD |
NE |
HNE |
357.8 |
0.0 |
| HCG1 |
CG |
CB |
HCB1 |
158.7 |
180.1 |
| HCG1 |
CG |
CB |
HCB2 |
281.8 |
60.1 |
| CB |
CG |
HCG1 |
OD |
121.7 |
239.9 |
| CB |
CG |
HCG1 |
HCG2 |
240.8 |
119.9 |
| OD |
CG |
HCG1 |
HCG2 |
119.1 |
240.0 |
| HCG1 |
CG |
OD |
NE |
84.3 |
60.0 |
| HCG2 |
CG |
CB |
HCB1 |
37.3 |
299.9 |
| HCG2 |
CG |
CB |
HCB2 |
160.4 |
180.0 |
| CB |
CG |
HCG2 |
OD |
237.5 |
120.1 |
| CB |
CG |
HCG2 |
HCG1 |
118.7 |
240.1 |
| OD |
CG |
HCG2 |
HCG1 |
241.3 |
120.0 |
| HCG2 |
CG |
OD |
NE |
205.7 |
300.0 |
| O |
C |
CA |
HA |
229.8 |
210.0 |
| CA |
C |
O |
OXT |
180.0 |
180.0 |
| O |
C |
OXT |
HXT |
0.0 |
360.0 |
| OXT |
C |
CA |
HA |
49.8 |
30.0 |
| CA |
C |
OXT |
O |
180.0 |
180.0 |
| NE |
OD |
CG |
HCG1 |
84.3 |
60.0 |
| NE |
OD |
CG |
HCG2 |
205.7 |
300.0 |
| CZ |
NE |
OD |
HNE |
180.0 |
179.9 |
| OD |
NE |
CZ |
NH1 |
346.0 |
0.0 |
| OD |
NE |
CZ |
NH2 |
165.2 |
180.0 |
| OD |
NE |
CZ |
HNE |
180.0 |
180.1 |
| NH1 |
CZ |
NE |
NH2 |
180.8 |
180.0 |
| NE |
CZ |
NH1 |
HN1 |
180.0 |
180.0 |
| NE |
CZ |
NH2 |
HN21 |
180.4 |
179.9 |
| NE |
CZ |
NH2 |
HN22 |
0.4 |
0.0 |
| OD |
NE |
HNE |
CZ |
180.0 |
179.9 |
| HNE |
NE |
CZ |
NH1 |
166.1 |
179.9 |
| HNE |
NE |
CZ |
NH2 |
345.2 |
360.0 |
| NH1 |
CZ |
NE |
HNE |
166.1 |
179.9 |
| NE |
CZ |
NH1 |
NH2 |
179.2 |
180.0 |
| NH1 |
CZ |
NH2 |
HN21 |
359.6 |
359.9 |
| NH1 |
CZ |
NH2 |
HN22 |
179.6 |
180.1 |
| NH2 |
CZ |
NE |
HNE |
345.2 |
360.0 |
| NE |
CZ |
NH2 |
NH1 |
180.8 |
180.0 |
| NH2 |
CZ |
NH1 |
HN1 |
0.8 |
360.0 |
| HN21 |
NH2 |
CZ |
HN22 |
180.0 |
179.9 |
| HN1 |
NH1 |
CZ |
NH2 |
0.8 |
360.0 |
| CZ |
NH2 |
HN21 |
HN22 |
180.0 |
180.1 |
| CZ |
NH2 |
HN22 |
HN21 |
180.0 |
179.9 |