PDB Chemical Component GG5
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for GG5
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C6 |
1.445 |
1.385 |
C1 |
N2 |
1.398 |
1.351 |
C1 |
H1 |
1.080 |
1.085 |
N2 |
C3 |
1.384 |
1.352 |
C3 |
C4 |
1.518 |
1.386 |
C3 |
H3 |
1.080 |
1.085 |
C4 |
C5 |
1.474 |
1.393 |
C4 |
H4 |
1.080 |
1.085 |
C5 |
C6 |
1.474 |
1.392 |
C5 |
C7 |
1.539 |
1.431 |
C6 |
H6 |
1.080 |
1.086 |
C7 |
C12 |
1.461 |
1.411 |
C7 |
C8 |
1.420 |
1.374 |
C8 |
N9 |
1.341 |
1.364 |
C8 |
H8 |
1.080 |
1.081 |
N9 |
N11 |
1.335 |
1.344 |
N9 |
HN9 |
1.000 |
1.012 |
N11 |
C12 |
1.347 |
1.338 |
C12 |
C13 |
1.677 |
1.437 |
C13 |
C14 |
1.451 |
1.395 |
C13 |
C18 |
1.484 |
1.395 |
C14 |
C15 |
1.452 |
1.395 |
C14 |
H14 |
1.080 |
1.087 |
C15 |
C16 |
1.462 |
1.396 |
C15 |
H15 |
1.080 |
1.086 |
C16 |
F19 |
1.303 |
1.339 |
C16 |
C17 |
1.441 |
1.395 |
C17 |
C18 |
1.437 |
1.395 |
C17 |
H17 |
1.080 |
1.086 |
C18 |
H18 |
1.080 |
1.088 |
Bond Angles for GG5
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
N2 |
C1 |
C6 |
123.2 |
124.1 |
C6 |
C1 |
H1 |
118.4 |
120.8 |
C1 |
C6 |
C5 |
120.2 |
118.1 |
C1 |
C6 |
H6 |
119.9 |
120.2 |
N2 |
C1 |
H1 |
118.4 |
115.2 |
C1 |
N2 |
C3 |
119.1 |
116.4 |
N2 |
C3 |
C4 |
122.4 |
124.0 |
N2 |
C3 |
H3 |
118.8 |
115.2 |
C4 |
C3 |
H3 |
118.8 |
120.8 |
C3 |
C4 |
C5 |
118.0 |
118.0 |
C3 |
C4 |
H4 |
121.0 |
120.2 |
C5 |
C4 |
H4 |
121.0 |
121.7 |
C4 |
C5 |
C6 |
117.2 |
119.4 |
C4 |
C5 |
C7 |
120.3 |
120.3 |
C6 |
C5 |
C7 |
122.5 |
120.3 |
C5 |
C6 |
H6 |
119.9 |
121.7 |
C5 |
C7 |
C12 |
134.4 |
131.8 |
C5 |
C7 |
C8 |
122.4 |
123.5 |
C8 |
C7 |
C12 |
103.2 |
104.6 |
C7 |
C12 |
N11 |
108.8 |
112.4 |
C7 |
C12 |
C13 |
128.4 |
127.4 |
C7 |
C8 |
N9 |
107.7 |
105.9 |
C7 |
C8 |
H8 |
126.2 |
132.8 |
N9 |
C8 |
H8 |
126.1 |
121.4 |
C8 |
N9 |
N11 |
112.4 |
113.8 |
C8 |
N9 |
HN9 |
123.8 |
127.9 |
N11 |
N9 |
HN9 |
123.8 |
118.3 |
N9 |
N11 |
C12 |
107.8 |
103.3 |
N11 |
C12 |
C13 |
122.8 |
120.3 |
C12 |
C13 |
C14 |
129.7 |
120.0 |
C12 |
C13 |
C18 |
112.0 |
120.0 |
C14 |
C13 |
C18 |
118.3 |
120.0 |
C13 |
C14 |
C15 |
120.6 |
120.0 |
C13 |
C14 |
H14 |
119.7 |
120.9 |
C13 |
C18 |
C17 |
121.5 |
120.0 |
C13 |
C18 |
H18 |
119.2 |
120.9 |
C15 |
C14 |
H14 |
119.7 |
119.1 |
C14 |
C15 |
C16 |
119.5 |
120.0 |
C14 |
C15 |
H15 |
120.2 |
120.0 |
C16 |
C15 |
H15 |
120.3 |
120.0 |
C15 |
C16 |
F19 |
119.0 |
120.0 |
C15 |
C16 |
C17 |
121.1 |
120.0 |
C17 |
C16 |
F19 |
119.8 |
120.0 |
C16 |
C17 |
C18 |
119.0 |
120.0 |
C16 |
C17 |
H17 |
120.5 |
120.0 |
C18 |
C17 |
H17 |
120.5 |
120.0 |
C17 |
C18 |
H18 |
119.3 |
119.1 |
Torsion Angles for GG5
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
N2 |
C1 |
C6 |
H1 |
180.0 |
180.2 |
C6 |
C1 |
N2 |
C3 |
0.0 |
359.9 |
C4 |
C5 |
C6 |
C1 |
0.0 |
359.9 |
C1 |
C6 |
C5 |
C7 |
180.0 |
179.9 |
C5 |
C6 |
C1 |
H6 |
180.0 |
180.1 |
C6 |
C1 |
N2 |
H1 |
180.0 |
179.8 |
N2 |
C1 |
C6 |
C5 |
360.0 |
0.1 |
N2 |
C1 |
C6 |
H6 |
180.0 |
180.0 |
C1 |
N2 |
C3 |
C4 |
0.0 |
0.1 |
C1 |
N2 |
C3 |
H3 |
180.0 |
180.1 |
N2 |
C1 |
H1 |
C6 |
180.0 |
179.8 |
H1 |
C1 |
C6 |
C5 |
180.0 |
179.9 |
H1 |
C1 |
C6 |
H6 |
359.9 |
359.8 |
H1 |
C1 |
N2 |
C3 |
180.0 |
180.1 |
C3 |
N2 |
C1 |
C6 |
0.0 |
359.9 |
C3 |
N2 |
C1 |
H1 |
180.0 |
180.1 |
C4 |
C3 |
N2 |
H3 |
180.0 |
180.0 |
N2 |
C3 |
C4 |
C5 |
360.0 |
360.0 |
N2 |
C3 |
C4 |
H4 |
180.0 |
180.0 |
N2 |
C3 |
C4 |
H3 |
180.0 |
180.0 |
C5 |
C4 |
C3 |
H4 |
180.0 |
180.0 |
C3 |
C4 |
C5 |
C6 |
0.0 |
0.0 |
C3 |
C4 |
C5 |
C7 |
180.0 |
180.0 |
N2 |
C3 |
H3 |
C4 |
180.0 |
180.0 |
H3 |
C3 |
C4 |
C5 |
180.0 |
180.0 |
H3 |
C3 |
C4 |
H4 |
360.0 |
360.0 |
C1 |
C6 |
C5 |
C4 |
0.0 |
359.9 |
C5 |
C4 |
C3 |
H3 |
180.0 |
180.0 |
C3 |
C4 |
C5 |
H4 |
180.0 |
180.0 |
C6 |
C5 |
C4 |
C7 |
180.0 |
180.0 |
C4 |
C5 |
C6 |
H6 |
180.0 |
180.0 |
C4 |
C5 |
C7 |
C12 |
143.4 |
270.0 |
C4 |
C5 |
C7 |
C8 |
323.1 |
90.0 |
H4 |
C4 |
C3 |
H3 |
360.0 |
360.0 |
C3 |
C4 |
H4 |
C5 |
180.0 |
180.0 |
H4 |
C4 |
C5 |
C6 |
180.0 |
180.0 |
H4 |
C4 |
C5 |
C7 |
360.0 |
0.0 |
C5 |
C6 |
C1 |
H1 |
180.0 |
179.9 |
C1 |
C6 |
C5 |
H6 |
180.0 |
179.9 |
C6 |
C5 |
C4 |
H4 |
180.0 |
180.0 |
C4 |
C5 |
C6 |
C7 |
180.0 |
180.0 |
C6 |
C5 |
C7 |
C12 |
323.4 |
90.0 |
C6 |
C5 |
C7 |
C8 |
143.1 |
270.0 |
C7 |
C5 |
C4 |
H4 |
360.0 |
0.0 |
C4 |
C5 |
C7 |
C6 |
180.0 |
180.0 |
C7 |
C5 |
C6 |
H6 |
0.1 |
0.0 |
C8 |
C7 |
C5 |
C12 |
179.7 |
179.9 |
C5 |
C7 |
C12 |
N11 |
179.7 |
179.9 |
C5 |
C7 |
C12 |
C13 |
359.8 |
359.9 |
C5 |
C7 |
C8 |
N9 |
180.2 |
180.1 |
C5 |
C7 |
C8 |
H8 |
0.2 |
0.0 |
H6 |
C6 |
C1 |
H1 |
359.9 |
359.8 |
C1 |
C6 |
H6 |
C5 |
180.0 |
180.1 |
H6 |
C6 |
C5 |
C7 |
0.1 |
0.0 |
C5 |
C7 |
C12 |
C8 |
179.7 |
179.9 |
C12 |
C7 |
C8 |
N9 |
0.0 |
0.0 |
C12 |
C7 |
C8 |
H8 |
180.0 |
179.9 |
N9 |
N11 |
C12 |
C7 |
0.1 |
0.0 |
N11 |
C12 |
C7 |
C13 |
179.8 |
180.0 |
C7 |
C12 |
C13 |
C14 |
126.1 |
90.0 |
C7 |
C12 |
C13 |
C18 |
305.9 |
270.0 |
C5 |
C7 |
C8 |
C12 |
180.2 |
180.1 |
C8 |
C7 |
C12 |
N11 |
359.9 |
360.0 |
C8 |
C7 |
C12 |
C13 |
180.1 |
180.0 |
N9 |
C8 |
C7 |
H8 |
180.0 |
180.1 |
C7 |
C8 |
N9 |
N11 |
0.0 |
360.0 |
C7 |
C8 |
N9 |
HN9 |
180.0 |
180.0 |
N9 |
C8 |
C7 |
C12 |
0.0 |
0.0 |
C7 |
C8 |
N9 |
H8 |
180.0 |
179.9 |
N11 |
N9 |
C8 |
HN9 |
180.0 |
180.0 |
C8 |
N9 |
N11 |
C12 |
359.9 |
0.0 |
H8 |
C8 |
C7 |
C12 |
180.0 |
179.9 |
C7 |
C8 |
H8 |
N9 |
180.0 |
180.1 |
H8 |
C8 |
N9 |
N11 |
180.1 |
180.0 |
H8 |
C8 |
N9 |
HN9 |
0.1 |
0.0 |
C7 |
C12 |
N11 |
N9 |
0.1 |
0.0 |
N11 |
N9 |
C8 |
H8 |
180.1 |
180.0 |
C8 |
N9 |
N11 |
HN9 |
180.0 |
180.0 |
N9 |
N11 |
C12 |
C13 |
179.9 |
180.0 |
HN9 |
N9 |
C8 |
H8 |
0.1 |
0.0 |
C8 |
N9 |
HN9 |
N11 |
180.0 |
180.0 |
HN9 |
N9 |
N11 |
C12 |
179.9 |
180.0 |
C7 |
C12 |
N11 |
C13 |
180.2 |
180.0 |
C12 |
N11 |
N9 |
HN9 |
179.9 |
180.0 |
N11 |
C12 |
C13 |
C14 |
306.3 |
270.0 |
N11 |
C12 |
C13 |
C18 |
126.1 |
90.0 |
C7 |
C12 |
C13 |
N11 |
179.8 |
180.0 |
C14 |
C13 |
C12 |
C18 |
180.2 |
180.1 |
C12 |
C13 |
C14 |
C15 |
179.7 |
180.0 |
C12 |
C13 |
C14 |
H14 |
359.7 |
0.0 |
C12 |
C13 |
C18 |
C17 |
180.3 |
180.0 |
C12 |
C13 |
C18 |
H18 |
0.3 |
0.1 |
C12 |
C13 |
C14 |
C18 |
179.8 |
179.9 |
C14 |
C13 |
C18 |
C17 |
0.1 |
359.9 |
C14 |
C13 |
C18 |
H18 |
180.1 |
180.0 |
C15 |
C14 |
C13 |
H14 |
180.0 |
179.9 |
C13 |
C14 |
C15 |
C16 |
360.0 |
0.0 |
C13 |
C14 |
C15 |
H15 |
180.0 |
179.9 |
C12 |
C13 |
C18 |
C14 |
180.2 |
180.1 |
C18 |
C13 |
C14 |
C15 |
359.9 |
0.0 |
C18 |
C13 |
C14 |
H14 |
179.9 |
180.1 |
C16 |
C17 |
C18 |
C13 |
0.0 |
0.1 |
C13 |
C18 |
C17 |
H17 |
180.0 |
180.0 |
C17 |
C18 |
C13 |
H18 |
180.0 |
179.9 |
C15 |
C14 |
C13 |
C18 |
359.9 |
0.0 |
C13 |
C14 |
C15 |
H14 |
180.0 |
180.1 |
C16 |
C15 |
C14 |
H15 |
180.0 |
180.1 |
C14 |
C15 |
C16 |
F19 |
180.2 |
180.0 |
C14 |
C15 |
C16 |
C17 |
0.2 |
360.0 |
H14 |
C14 |
C13 |
C18 |
179.9 |
180.1 |
C13 |
C14 |
H14 |
C15 |
180.0 |
179.9 |
H14 |
C14 |
C15 |
C16 |
179.9 |
180.0 |
H14 |
C14 |
C15 |
H15 |
359.9 |
359.9 |
C16 |
C15 |
C14 |
H14 |
179.9 |
180.0 |
C14 |
C15 |
C16 |
H15 |
180.0 |
179.9 |
C17 |
C16 |
C15 |
F19 |
180.0 |
180.0 |
C15 |
C16 |
C17 |
C18 |
359.8 |
360.0 |
C15 |
C16 |
C17 |
H17 |
179.8 |
180.0 |
H15 |
C15 |
C14 |
H14 |
359.9 |
359.9 |
C14 |
C15 |
H15 |
C16 |
180.0 |
180.1 |
H15 |
C15 |
C16 |
F19 |
0.2 |
0.0 |
H15 |
C15 |
C16 |
C17 |
180.2 |
180.1 |
F19 |
C16 |
C15 |
H15 |
0.2 |
0.0 |
C15 |
C16 |
F19 |
C17 |
180.0 |
180.0 |
F19 |
C16 |
C17 |
C18 |
179.8 |
180.0 |
F19 |
C16 |
C17 |
H17 |
359.8 |
0.0 |
C13 |
C18 |
C17 |
C16 |
0.0 |
0.1 |
C17 |
C16 |
C15 |
H15 |
180.2 |
180.1 |
C15 |
C16 |
C17 |
F19 |
180.0 |
180.0 |
C18 |
C17 |
C16 |
H17 |
180.0 |
180.0 |
C16 |
C17 |
C18 |
H18 |
180.0 |
180.0 |
C13 |
C18 |
C17 |
H18 |
180.0 |
180.1 |
C18 |
C17 |
C16 |
F19 |
179.8 |
180.0 |
C16 |
C17 |
C18 |
H17 |
180.0 |
180.0 |
H17 |
C17 |
C16 |
F19 |
359.8 |
0.0 |
C16 |
C17 |
H17 |
C18 |
180.0 |
180.0 |
H17 |
C17 |
C18 |
H18 |
0.0 |
360.0 |
C13 |
C18 |
H18 |
C17 |
180.0 |
179.9 |
H18 |
C18 |
C17 |
H17 |
0.0 |
360.0 |