PDB Chemical Component GFL

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GFL

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O3P P 1.619 1.610
O3P HO3P 0.950 0.967
P O1P 1.480 1.480
P O2P 1.480 1.610
P O5' 1.618 1.610
O2P HO2P 0.950 0.967
O5' C5' 1.443 1.429
C5' C4' 1.522 1.530
C5' H5'1 1.100 1.090
C5' H5'2 1.100 1.090
C4' O4' 1.449 1.444
C4' C3' 1.542 1.544
C4' H4' 1.100 1.090
O4' C1' 1.422 1.445
C3' O3' 1.453 1.429
C3' C2' 1.511 1.547
C3' H3' 1.100 1.090
O3' HO3' 0.950 0.968
C2' C1' 1.508 1.545
C2' F 1.368 1.399
C2' H2' 1.100 1.090
C1' N9 1.473 1.465
C1' H1' 1.100 1.089
N9 C8 1.354 1.365
N9 C4 1.369 1.369
C8 N7 1.298 1.302
C8 H8 1.080 1.080
N7 C5 1.406 1.354
C5 C6 1.430 1.415
C5 C4 1.382 1.399
C6 O6 1.230 1.219
C6 N1 1.387 1.351
N1 C2 1.377 1.363
N1 HN1 1.000 0.970
C2 N2 1.321 1.372
C2 N3 1.321 1.314
N2 HN21 1.000 0.970
N2 HN22 1.000 0.971
N3 C4 1.346 1.338

Bond Angles for GFL

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
P O3P HO3P 109.5 106.8
O3P P O1P 108.4 109.5
O3P P O2P 108.4 109.5
O3P P O5' 102.8 109.4
O1P P O2P 119.8 109.5
O1P P O5' 108.0 109.5
O2P P O5' 108.1 109.5
P O2P HO2P 109.5 106.8
P O5' C5' 121.0 106.8
O5' C5' C4' 113.3 109.5
O5' C5' H5'1 108.2 109.5
O5' C5' H5'2 107.3 109.5
C4' C5' H5'1 108.2 109.5
C4' C5' H5'2 107.3 109.5
C5' C4' O4' 111.7 110.3
C5' C4' C3' 111.9 110.5
C5' C4' H4' 105.4 110.3
H5'1 C5' H5'2 112.5 109.5
O4' C4' C3' 106.7 104.8
O4' C4' H4' 110.7 110.3
C4' O4' C1' 105.0 105.3
C3' C4' H4' 110.5 110.4
C4' C3' O3' 110.4 110.5
C4' C3' C2' 103.8 104.1
C4' C3' H3' 113.3 110.5
O4' C1' C2' 105.5 104.9
O4' C1' N9 114.6 110.4
O4' C1' H1' 109.4 110.4
O3' C3' C2' 111.6 110.6
O3' C3' H3' 105.7 110.5
C3' O3' HO3' 109.5 106.8
C2' C3' H3' 112.2 110.5
C3' C2' C1' 104.5 104.0
C3' C2' F 110.1 110.5
C3' C2' H2' 112.8 110.5
C1' C2' F 110.8 110.6
C1' C2' H2' 112.1 110.7
C2' C1' N9 111.2 110.4
C2' C1' H1' 112.9 110.3
F C2' H2' 106.7 110.4
N9 C1' H1' 103.4 110.4
C1' N9 C8 131.5 126.3
C1' N9 C4 124.5 126.2
C8 N9 C4 104.0 107.5
N9 C8 N7 117.3 109.8
N9 C8 H8 121.4 125.1
N9 C4 C5 106.9 106.1
N9 C4 N3 125.0 134.2
N7 C8 H8 121.4 125.1
C8 N7 C5 101.6 109.3
N7 C5 C6 130.8 134.1
N7 C5 C4 110.2 107.3
C6 C5 C4 119.0 118.5
C5 C6 O6 129.0 120.8
C5 C6 N1 111.3 118.4
C5 C4 N3 128.2 119.7
O6 C6 N1 119.6 120.8
C6 N1 C2 125.1 120.3
C6 N1 HN1 117.4 119.8
C2 N1 HN1 117.5 119.8
N1 C2 N2 116.9 119.1
N1 C2 N3 124.0 121.9
N2 C2 N3 119.2 119.0
C2 N2 HN21 110.8 120.0
C2 N2 HN22 124.6 120.0
C2 N3 C4 112.4 121.1
HN21 N2 HN22 124.6 120.0

Torsion Angles for GFL

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O1P P O3P O2P 131.5 240.0
O1P P O3P O5' 245.8 120.0
O2P P O3P O5' 114.3 240.0
O3P P O2P HO2P 197.2 59.9
O3P P O5' C5' 16.8 175.0
HO3P O3P P O1P 59.4 300.0
HO3P O3P P O2P 287.9 60.0
HO3P O3P P O5' 173.6 180.0
O1P P O3P HO3P 59.4 300.0
O3P P O1P O2P 235.0 120.0
O3P P O1P O5' 110.8 240.0
O2P P O1P O5' 235.8 120.0
O1P P O2P HO2P 72.1 180.0
O1P P O5' C5' 131.3 55.0
O2P P O3P HO3P 287.9 60.0
O3P P O2P O1P 125.0 240.0
O3P P O2P O5' 249.2 120.0
O1P P O2P O5' 124.2 240.0
O2P P O5' C5' 262.3 295.0
O5' P O3P HO3P 173.6 180.0
O3P P O5' O1P 245.5 120.0
O3P P O5' O2P 114.5 240.0
O1P P O5' O2P 229.0 120.0
O5' P O2P HO2P 308.0 300.0
P O5' C5' C4' 91.5 180.0
P O5' C5' H5'1 211.5 60.0
P O5' C5' H5'2 333.2 300.0
HO2P O2P P O5' 308.0 300.0
C4' C5' O5' H5'1 240.0 120.0
C4' C5' O5' H5'2 118.3 240.0
O5' C5' C4' O4' 302.7 66.4
O5' C5' C4' C3' 62.2 181.9
O5' C5' C4' H4' 182.4 304.2
H5'1 C5' O5' H5'2 238.3 120.0
O5' C5' C4' H5'1 120.0 240.0
O5' C5' C4' H5'2 241.7 120.0
H5'1 C5' C4' H5'2 121.7 240.0
O4' C4' C5' C3' 240.5 244.6
O4' C4' C5' H4' 120.3 122.2
C5' C4' O4' C1' 153.7 159.5
C3' C4' C5' H4' 239.8 237.6
C5' C4' C3' O3' 107.2 98.4
C5' C4' C3' C2' 226.9 217.1
C5' C4' C3' H3' 348.8 335.8
O5' C5' H5'1 C4' 236.9 120.0
O5' C5' H5'1 H5'2 118.4 240.0
C4' C5' H5'1 H5'2 241.6 120.0
H5'1 C5' C4' O4' 182.7 186.5
H5'1 C5' C4' C3' 302.2 301.9
H5'1 C5' C4' H4' 62.4 64.2
O5' C5' H5'2 C4' 122.1 240.0
O5' C5' H5'2 H5'1 241.1 120.0
C4' C5' H5'2 H5'1 119.0 240.0
H5'2 C5' C4' O4' 61.0 306.4
H5'2 C5' C4' C3' 180.5 61.9
H5'2 C5' C4' H4' 300.7 184.2
O4' C4' C5' H5'1 182.7 186.5
O4' C4' C5' H5'2 61.0 306.4
C5' C4' O4' C3' 122.5 118.9
C5' C4' O4' H4' 242.9 237.8
C3' C4' O4' H4' 120.3 118.9
O4' C4' C3' O3' 229.6 217.2
O4' C4' C3' C2' 349.3 335.9
O4' C4' C3' H3' 111.3 94.6
C4' O4' C1' C2' 320.5 319.5
C4' O4' C1' N9 197.8 200.7
C4' O4' C1' H1' 82.3 78.4
C3' C4' C5' H5'1 302.2 301.9
C3' C4' C5' H5'2 180.5 61.9
C5' C4' C3' O4' 237.6 241.1
C5' C4' C3' H4' 117.1 122.3
O4' C4' C3' H4' 239.6 241.2
C3' C4' O4' C1' 31.1 40.5
O3' C3' C4' C2' 240.3 241.3
O3' C3' C4' H3' 118.4 122.6
C4' C3' O3' HO3' 25.4 180.0
C2' C3' C4' H3' 238.1 241.3
C4' C3' C2' C1' 347.6 0.1
C4' C3' C2' F 106.6 118.8
C4' C3' C2' H2' 225.6 241.3
H4' C4' C5' H5'1 62.4 64.2
H4' C4' C5' H5'2 300.7 184.2
C5' C4' H4' O4' 121.0 122.2
C5' C4' H4' C3' 238.9 237.6
O4' C4' H4' C3' 118.0 115.4
H4' C4' O4' C1' 270.8 281.7
H4' C4' C3' O3' 350.1 336.0
H4' C4' C3' C2' 109.8 94.7
H4' C4' C3' H3' 231.7 213.4
C1' O4' C4' C3' 31.1 40.5
C1' O4' C4' H4' 270.8 281.7
C3' C2' C1' O4' 32.2 23.8
O4' C1' C2' F 273.6 265.2
O4' C1' C2' H2' 154.6 142.5
C2' C1' O4' N9 122.8 118.9
C2' C1' O4' H1' 238.3 241.2
N9 C1' O4' H1' 115.5 122.3
O4' C1' N9 C8 23.7 22.0
O4' C1' N9 C4 203.8 202.0
O3' C3' C4' H4' 350.1 336.0
C4' C3' O3' C2' 114.9 114.7
C4' C3' O3' H3' 237.1 237.4
C2' C3' O3' H3' 122.2 122.7
O3' C3' C2' C1' 106.5 118.8
O3' C3' C2' F 225.5 237.4
O3' C3' C2' H2' 344.5 360.0
C2' C3' C4' H4' 109.8 94.7
C4' C3' C2' O3' 241.1 241.3
C4' C3' C2' H3' 122.6 118.7
O4' C1' C2' C3' 32.2 23.8
O3' C3' C2' H3' 241.5 237.4
C2' C3' O3' HO3' 270.5 65.3
C1' C2' C3' F 241.0 241.3
C1' C2' C3' H2' 122.0 118.8
C3' C2' C1' N9 157.1 142.7
C3' C2' C1' H1' 272.8 265.0
F C2' C3' H2' 241.0 237.5
H3' C3' C4' H4' 231.7 213.4
C4' C3' H3' O3' 121.1 122.6
C4' C3' H3' C2' 242.9 245.3
O3' C3' H3' C2' 121.9 122.7
H3' C3' O3' HO3' 148.3 302.6
H3' C3' C2' C1' 225.0 241.4
H3' C3' C2' F 344.0 0.1
H3' C3' C2' H2' 103.0 122.6
HO3' O3' C3' C2' 270.5 65.3
HO3' O3' C3' H3' 148.3 302.6
O4' C1' C2' N9 235.1 241.1
O4' C1' C2' H1' 119.4 118.8
C1' C2' C3' H3' 225.0 241.4
C3' C2' C1' F 118.5 118.6
C3' C2' C1' H2' 237.6 241.3
F C2' C1' H2' 119.1 122.7
N9 C1' C2' H1' 244.3 237.7
C2' C1' N9 C8 264.1 266.6
C2' C1' N9 C4 84.2 86.5
F C2' C3' H3' 344.0 0.1
C3' C2' F C1' 245.0 245.4
C3' C2' F H2' 122.7 122.6
C1' C2' F H2' 237.7 237.2
F C2' C1' N9 38.5 24.1
F C2' C1' H1' 154.2 146.4
H2' C2' C3' H3' 103.0 122.6
C3' C2' H2' C1' 117.6 114.7
C3' C2' H2' F 239.0 237.4
C1' C2' H2' F 121.4 122.8
H2' C2' C1' N9 279.5 261.4
H2' C2' C1' H1' 35.2 23.7
O4' C1' N9 C2' 119.6 115.5
O4' C1' N9 H1' 241.1 237.7
N9 C1' C2' F 38.5 24.1
N9 C1' C2' H2' 279.5 261.4
C2' C1' N9 H1' 121.4 122.3
C8 N9 C1' C4 179.9 180.1
C1' N9 C8 N7 180.1 180.0
C1' N9 C8 H8 0.1 360.0
C1' N9 C4 C5 179.9 180.0
C1' N9 C4 N3 359.8 0.1
O4' C1' H1' C2' 242.9 244.6
O4' C1' H1' N9 122.5 122.3
H1' C1' C2' F 154.2 146.4
H1' C1' C2' H2' 35.2 23.7
C2' C1' H1' N9 239.7 237.7
H1' C1' N9 C8 142.6 144.3
H1' C1' N9 C4 322.7 324.3
C8 N9 C1' H1' 142.6 144.3
C1' N9 C8 C4 180.1 180.0
C8 N9 C4 C5 359.9 359.9
C8 N9 C4 N3 179.9 180.0
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 C5 360.0 360.0
C4 N9 C1' H1' 322.7 324.3
C1' N9 C4 C8 179.9 180.0
C4 N9 C8 N7 0.0 0.1
C4 N9 C8 H8 180.1 180.0
N7 C5 C4 N9 0.1 0.1
C6 C5 C4 N9 180.0 180.0
C5 C4 N9 N3 180.1 179.9
C2 N3 C4 N9 180.1 179.9
N7 C8 N9 C4 0.0 0.1
N9 C8 N7 H8 180.0 180.0
C8 N7 C5 C6 180.1 180.0
C8 N7 C5 C4 360.0 360.0
H8 C8 N9 C4 180.1 180.0
N9 C8 H8 N7 180.0 180.0
H8 C8 N7 C5 180.0 180.0
N9 C4 C5 N7 0.1 0.1
C5 N7 C8 H8 180.0 180.0
C6 C5 N7 C4 180.1 180.0
N7 C5 C6 O6 359.3 0.0
N7 C5 C6 N1 179.8 179.7
N7 C5 C4 N3 180.1 180.0
N9 C4 C5 C6 180.0 180.0
N7 C5 C6 C4 179.9 180.0
C6 C5 C4 N3 0.1 360.0
O6 C6 C5 N1 179.5 180.3
C5 C6 N1 C2 0.0 0.6
C5 C6 N1 HN1 180.0 180.0
N9 C4 C5 N3 179.9 180.1
N7 C5 C4 C6 180.1 180.0
C4 C5 C6 O6 179.4 180.1
C4 C5 C6 N1 359.9 359.7
C2 N3 C4 C5 360.0 0.1
O6 C6 C5 C4 179.4 180.1
C5 C6 O6 N1 180.5 179.7
O6 C6 N1 C2 180.5 180.2
O6 C6 N1 HN1 0.5 359.7
N1 C6 C5 C4 359.9 359.7
C5 C6 N1 O6 179.5 180.3
C2 N1 C6 HN1 180.0 180.6
C6 N1 C2 N2 180.3 179.7
C6 N1 C2 N3 360.0 359.4
C6 N1 C2 HN1 180.0 179.4
N2 C2 N1 N3 180.3 180.3
N1 C2 N2 HN21 179.8 179.8
N1 C2 N2 HN22 359.7 359.5
N1 C2 N3 C4 360.0 0.2
C6 N1 HN1 C2 180.0 180.6
HN1 N1 C2 N2 0.3 0.3
HN1 N1 C2 N3 180.0 180.0
N2 C2 N1 HN1 0.3 0.3
N1 C2 N2 N3 179.7 179.8
N2 C2 N3 C4 179.7 180.0
HN21 N2 C2 HN22 180.0 180.3
N9 C4 N3 C2 180.1 179.9
C5 C4 N3 C2 360.0 0.1
N3 C2 N1 HN1 180.0 180.0
N1 C2 N3 N2 180.3 180.3
N3 C2 N2 HN21 0.0 0.0
N3 C2 N2 HN22 180.0 179.7
HN21 N2 C2 N3 0.0 0.0
C2 N2 HN21 HN22 180.0 179.7
HN22 N2 C2 N3 180.0 179.7
C2 N2 HN22 HN21 180.0 180.3
N9 C4 N3 C5 180.1 179.9