PDB Chemical Component GFF

Ideal Model

Chemical Description

Name 2'-DEOXY-5'-O-[({[DIFLUORO(PHOSPHONO)METHYL](HYDROXY)PHOSPHORYL}OXY)(HYDROXY)PHOSPHORYL]GUANOSINE
Formula C11 H16 F2 N5 O12 P3
Formal charge 0
Molecular weight 541.189 g/mol
Component type NON-POLYMER

Chemical features

Atom count 49
Chiral atom count 5
Chiral atoms P1 P2 C4' C1' C3'
Bond count 51
Aromatic bond count 5

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxy-5'-O-[(R)-{[(S)-[difluoro(phosphono)methyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]guanosine
Systematic name (OpenEye OEToolkits) [[[[(2R,3S,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3-hydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]-difluoro-methyl]phosphonic acid

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=Nc2n(cnc2C(=O)N1)[C@H]3C[C@H](O)[C@@H](CO[P@](O)(=O)O[P@](O)(=O)C(F)(F)[P](O)(O)=O)O3
SMILES (CACTVS) NC1=Nc2n(cnc2C(=O)N1)[CH]3C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)C(F)(F)[P](O)(O)=O)O3
Stereo SMILES (OpenEye) c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@](=O)(C(F)(F)P(=O)(O)O)O)O)N=C(NC2=O)N
InChI descriptor InChI=1S/C11H16F2N5O12P3/c12-11(13,31(21,22)23)32(24,25)30-33(26,27)28-2-5-4(19)1-6(29-5)18-3-15-7-8(18)16-10(14)17-9(7)20/h3-6,19H,1-2H2,(H,24,25)(H,26,27)(H2,21,22,23)(H3,14,16,17,20)/t4-,5+,6+/m0/s1
InChIKey descriptor BLHFKUNEUAHYSE-KVQBGUIXSA-N

Status Information

Last modified 2011-06-04
Created 2006-10-25
Release status REL
Model PDB code 2ISO
Processing site RCSB