PDB Chemical Component GFA
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for GFA
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
O2 |
C13 |
1.423 |
1.356 |
O2 |
C14 |
1.412 |
1.428 |
CL1 |
C10 |
1.688 |
1.736 |
O3 |
C15 |
1.246 |
1.214 |
O1 |
C7 |
1.210 |
1.216 |
N1 |
C16 |
1.398 |
1.399 |
N1 |
C15 |
1.400 |
1.348 |
C12 |
C13 |
1.407 |
1.386 |
C12 |
C11 |
1.397 |
1.381 |
C8 |
C9 |
1.428 |
1.398 |
C8 |
C7 |
1.501 |
1.474 |
C8 |
C13 |
1.439 |
1.403 |
C9 |
C10 |
1.393 |
1.379 |
C6 |
C7 |
1.484 |
1.478 |
C6 |
C1 |
1.424 |
1.396 |
C6 |
C5 |
1.403 |
1.397 |
C1 |
C2 |
1.402 |
1.380 |
C10 |
C11 |
1.390 |
1.386 |
C21 |
C16 |
1.410 |
1.388 |
C21 |
C20 |
1.411 |
1.381 |
C14 |
C15 |
1.507 |
1.507 |
C16 |
C17 |
1.398 |
1.389 |
C4 |
C5 |
1.405 |
1.379 |
C4 |
C3 |
1.403 |
1.385 |
C20 |
C19 |
1.383 |
1.383 |
C17 |
C18 |
1.391 |
1.381 |
C18 |
C19 |
1.403 |
1.383 |
C3 |
C2 |
1.382 |
1.384 |
N1 |
HN1 |
1.000 |
0.970 |
C12 |
H12 |
1.080 |
1.080 |
C9 |
H9 |
1.080 |
1.080 |
C1 |
H1 |
1.080 |
1.080 |
C21 |
H21 |
1.079 |
1.081 |
C14 |
H14 |
1.100 |
1.090 |
C14 |
H14A |
1.100 |
1.090 |
C4 |
H4 |
1.080 |
1.080 |
C11 |
H11 |
1.080 |
1.080 |
C20 |
H20 |
1.080 |
1.080 |
C17 |
H17 |
1.080 |
1.080 |
C5 |
H5 |
1.080 |
1.080 |
C18 |
H18 |
1.080 |
1.081 |
C3 |
H3 |
1.080 |
1.079 |
C19 |
H19 |
1.079 |
1.080 |
C2 |
H2 |
1.080 |
1.080 |
Bond Angles for GFA
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C13 |
O2 |
C14 |
121.8 |
117.0 |
O2 |
C13 |
C12 |
122.9 |
120.1 |
O2 |
C13 |
C8 |
116.2 |
120.2 |
O2 |
C14 |
C15 |
111.3 |
109.5 |
O2 |
C14 |
H14 |
108.8 |
109.5 |
O2 |
C14 |
H14A |
108.5 |
109.5 |
CL1 |
C10 |
C9 |
118.6 |
119.8 |
CL1 |
C10 |
C11 |
118.2 |
119.9 |
O3 |
C15 |
N1 |
126.6 |
119.9 |
O3 |
C15 |
C14 |
117.5 |
120.0 |
O1 |
C7 |
C8 |
120.5 |
120.0 |
O1 |
C7 |
C6 |
117.3 |
120.0 |
C16 |
N1 |
C15 |
130.1 |
120.0 |
N1 |
C16 |
C21 |
124.7 |
120.1 |
N1 |
C16 |
C17 |
115.7 |
120.1 |
C16 |
N1 |
HN1 |
115.0 |
120.0 |
N1 |
C15 |
C14 |
115.9 |
120.1 |
C15 |
N1 |
HN1 |
115.0 |
119.9 |
C13 |
C12 |
C11 |
119.6 |
120.1 |
C12 |
C13 |
C8 |
120.9 |
119.7 |
C13 |
C12 |
H12 |
120.2 |
119.9 |
C12 |
C11 |
C10 |
119.5 |
120.4 |
C11 |
C12 |
H12 |
120.2 |
119.9 |
C12 |
C11 |
H11 |
120.3 |
119.8 |
C9 |
C8 |
C7 |
120.5 |
120.2 |
C9 |
C8 |
C13 |
118.4 |
119.6 |
C8 |
C9 |
C10 |
118.4 |
119.9 |
C8 |
C9 |
H9 |
120.8 |
120.0 |
C7 |
C8 |
C13 |
121.0 |
120.2 |
C8 |
C7 |
C6 |
122.3 |
120.0 |
C9 |
C10 |
C11 |
123.2 |
120.3 |
C10 |
C9 |
H9 |
120.8 |
120.1 |
C7 |
C6 |
C1 |
121.6 |
120.2 |
C7 |
C6 |
C5 |
119.8 |
120.1 |
C1 |
C6 |
C5 |
118.6 |
119.7 |
C6 |
C1 |
C2 |
120.2 |
119.8 |
C6 |
C1 |
H1 |
119.9 |
120.1 |
C6 |
C5 |
C4 |
120.9 |
119.9 |
C6 |
C5 |
H5 |
119.6 |
120.1 |
C1 |
C2 |
C3 |
120.1 |
120.2 |
C2 |
C1 |
H1 |
119.9 |
120.1 |
C1 |
C2 |
H2 |
119.9 |
119.9 |
C10 |
C11 |
H11 |
120.2 |
119.8 |
C16 |
C21 |
C20 |
119.9 |
119.9 |
C21 |
C16 |
C17 |
119.6 |
119.8 |
C16 |
C21 |
H21 |
120.1 |
120.1 |
C21 |
C20 |
C19 |
119.8 |
120.1 |
C20 |
C21 |
H21 |
120.1 |
120.0 |
C21 |
C20 |
H20 |
120.1 |
120.0 |
C15 |
C14 |
H14 |
108.9 |
109.5 |
C15 |
C14 |
H14A |
108.5 |
109.4 |
C16 |
C17 |
C18 |
120.1 |
119.9 |
C16 |
C17 |
H17 |
119.9 |
120.0 |
C5 |
C4 |
C3 |
119.3 |
120.1 |
C5 |
C4 |
H4 |
120.4 |
120.0 |
C4 |
C5 |
H5 |
119.6 |
120.1 |
C4 |
C3 |
C2 |
121.0 |
120.3 |
C3 |
C4 |
H4 |
120.3 |
119.9 |
C4 |
C3 |
H3 |
119.5 |
119.8 |
C20 |
C19 |
C18 |
120.4 |
120.1 |
C19 |
C20 |
H20 |
120.1 |
119.9 |
C20 |
C19 |
H19 |
119.8 |
120.0 |
C17 |
C18 |
C19 |
120.3 |
120.1 |
C18 |
C17 |
H17 |
119.9 |
120.1 |
C17 |
C18 |
H18 |
119.9 |
119.9 |
C19 |
C18 |
H18 |
119.8 |
120.0 |
C18 |
C19 |
H19 |
119.8 |
119.9 |
C2 |
C3 |
H3 |
119.5 |
119.9 |
C3 |
C2 |
H2 |
120.0 |
120.0 |
H14 |
C14 |
H14A |
110.9 |
109.4 |
Torsion Angles for GFA
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C13 |
O2 |
C14 |
C15 |
90.5 |
180.0 |
C13 |
O2 |
C14 |
H14 |
210.5 |
300.0 |
C13 |
O2 |
C14 |
H14A |
331.3 |
60.0 |
O2 |
C13 |
C12 |
C11 |
179.5 |
180.0 |
C12 |
C13 |
O2 |
C8 |
180.3 |
180.0 |
O2 |
C13 |
C12 |
H12 |
359.5 |
359.8 |
C9 |
C8 |
C13 |
O2 |
180.6 |
180.0 |
C7 |
C8 |
C13 |
O2 |
0.5 |
0.0 |
C14 |
O2 |
C13 |
C12 |
30.8 |
360.0 |
C14 |
O2 |
C13 |
C8 |
210.5 |
180.0 |
O3 |
C15 |
C14 |
O2 |
194.6 |
0.1 |
N1 |
C15 |
C14 |
O2 |
14.8 |
180.0 |
C15 |
C14 |
O2 |
H14 |
240.0 |
239.9 |
C15 |
C14 |
O2 |
H14A |
119.2 |
120.0 |
H14 |
C14 |
O2 |
H14A |
239.2 |
240.0 |
C12 |
C11 |
C10 |
CL1 |
180.2 |
180.0 |
C8 |
C9 |
C10 |
CL1 |
179.9 |
180.0 |
C9 |
C10 |
CL1 |
C11 |
180.1 |
180.1 |
CL1 |
C10 |
C9 |
H9 |
359.8 |
359.9 |
CL1 |
C10 |
C11 |
H11 |
0.2 |
0.1 |
O2 |
C14 |
C15 |
O3 |
194.6 |
0.1 |
C16 |
N1 |
C15 |
O3 |
13.1 |
5.3 |
N1 |
C15 |
O3 |
C14 |
179.8 |
180.1 |
O3 |
C15 |
N1 |
HN1 |
193.1 |
185.3 |
O3 |
C15 |
C14 |
H14 |
74.6 |
240.0 |
O3 |
C15 |
C14 |
H14A |
313.8 |
120.1 |
C9 |
C8 |
C7 |
O1 |
210.9 |
284.6 |
O1 |
C7 |
C8 |
C13 |
31.0 |
104.5 |
C8 |
C7 |
O1 |
C6 |
181.0 |
180.1 |
O1 |
C7 |
C6 |
C1 |
239.5 |
354.8 |
O1 |
C7 |
C6 |
C5 |
58.3 |
174.4 |
O3 |
C15 |
N1 |
C16 |
13.1 |
5.3 |
C16 |
N1 |
C15 |
C14 |
192.9 |
185.4 |
C15 |
N1 |
C16 |
HN1 |
180.0 |
180.0 |
N1 |
C16 |
C21 |
C20 |
179.8 |
179.9 |
C21 |
C16 |
N1 |
C17 |
180.2 |
180.0 |
N1 |
C16 |
C21 |
H21 |
359.8 |
359.7 |
N1 |
C16 |
C17 |
C18 |
180.1 |
180.0 |
N1 |
C16 |
C17 |
H17 |
0.1 |
0.0 |
O2 |
C14 |
C15 |
N1 |
14.8 |
180.0 |
O3 |
C15 |
N1 |
C14 |
180.2 |
179.9 |
C15 |
N1 |
C16 |
C21 |
23.8 |
33.1 |
C15 |
N1 |
C16 |
C17 |
203.6 |
213.1 |
C16 |
N1 |
C15 |
HN1 |
180.0 |
180.0 |
N1 |
C15 |
C14 |
H14 |
254.8 |
59.9 |
N1 |
C15 |
C14 |
H14A |
134.0 |
300.0 |
C12 |
C13 |
O2 |
C14 |
30.8 |
360.0 |
O2 |
C13 |
C12 |
C8 |
179.7 |
180.0 |
C13 |
C12 |
C11 |
C10 |
360.0 |
0.1 |
C11 |
C12 |
C13 |
H12 |
180.0 |
180.2 |
C13 |
C12 |
C11 |
H11 |
180.0 |
180.0 |
C9 |
C8 |
C13 |
C12 |
0.3 |
360.0 |
C7 |
C8 |
C13 |
C12 |
180.2 |
180.0 |
CL1 |
C10 |
C11 |
C12 |
180.2 |
180.0 |
C11 |
C12 |
C13 |
C8 |
359.8 |
360.0 |
C13 |
C12 |
C11 |
H12 |
180.0 |
179.8 |
C9 |
C10 |
C11 |
C12 |
0.1 |
359.9 |
C10 |
C11 |
C12 |
H11 |
180.0 |
180.1 |
O2 |
C13 |
C8 |
C9 |
180.6 |
180.0 |
CL1 |
C10 |
C9 |
C8 |
179.9 |
180.0 |
O1 |
C7 |
C8 |
C9 |
210.9 |
284.6 |
C12 |
C13 |
C8 |
C9 |
0.3 |
360.0 |
C7 |
C8 |
C9 |
C13 |
180.1 |
180.0 |
C9 |
C8 |
C7 |
C6 |
31.9 |
104.7 |
C8 |
C9 |
C10 |
C11 |
360.0 |
0.0 |
C10 |
C9 |
C8 |
H9 |
180.0 |
180.0 |
O2 |
C13 |
C8 |
C7 |
0.5 |
0.0 |
O1 |
C7 |
C8 |
C6 |
179.0 |
179.9 |
C12 |
C13 |
C8 |
C7 |
180.2 |
180.0 |
C9 |
C8 |
C7 |
C13 |
179.9 |
180.0 |
C7 |
C8 |
C9 |
C10 |
179.9 |
180.0 |
C7 |
C8 |
C9 |
H9 |
359.9 |
360.0 |
C8 |
C7 |
C6 |
C1 |
58.5 |
174.7 |
C8 |
C7 |
C6 |
C5 |
237.3 |
354.3 |
C8 |
C13 |
O2 |
C14 |
210.5 |
180.0 |
O2 |
C13 |
C8 |
C12 |
180.3 |
180.0 |
C8 |
C13 |
C12 |
C11 |
359.8 |
360.0 |
C8 |
C13 |
C12 |
H12 |
179.9 |
179.8 |
C9 |
C8 |
C13 |
C7 |
180.1 |
180.0 |
C13 |
C8 |
C9 |
C10 |
359.8 |
0.0 |
C13 |
C8 |
C9 |
H9 |
179.8 |
180.0 |
C13 |
C8 |
C7 |
C6 |
212.0 |
284.6 |
CL1 |
C10 |
C9 |
C11 |
179.9 |
179.9 |
C12 |
C11 |
C10 |
C9 |
0.1 |
359.9 |
C10 |
C9 |
C8 |
C7 |
179.9 |
180.0 |
C10 |
C9 |
C8 |
C13 |
359.8 |
0.0 |
C8 |
C9 |
C10 |
H9 |
180.0 |
180.0 |
C9 |
C10 |
C11 |
H11 |
180.1 |
180.0 |
O1 |
C7 |
C6 |
C8 |
181.0 |
180.1 |
C6 |
C7 |
C8 |
C13 |
212.0 |
284.6 |
C1 |
C6 |
C7 |
C5 |
181.2 |
180.4 |
C7 |
C6 |
C1 |
C2 |
178.8 |
179.9 |
C7 |
C6 |
C1 |
H1 |
358.8 |
359.8 |
C7 |
C6 |
C5 |
C4 |
181.3 |
180.0 |
C7 |
C6 |
C5 |
H5 |
1.3 |
0.1 |
C7 |
C6 |
C1 |
C5 |
178.8 |
179.6 |
C1 |
C6 |
C5 |
C4 |
0.2 |
359.6 |
C1 |
C6 |
C5 |
H5 |
180.1 |
179.7 |
C6 |
C1 |
C2 |
C3 |
359.9 |
0.0 |
C2 |
C1 |
C6 |
H1 |
180.0 |
180.1 |
C6 |
C1 |
C2 |
H2 |
179.9 |
179.9 |
C7 |
C6 |
C5 |
C1 |
181.1 |
180.4 |
C5 |
C6 |
C1 |
C2 |
360.0 |
0.3 |
C5 |
C6 |
C1 |
H1 |
179.9 |
180.2 |
C6 |
C5 |
C4 |
C3 |
359.8 |
0.1 |
C6 |
C5 |
C4 |
H4 |
179.8 |
180.0 |
C4 |
C5 |
C6 |
H5 |
180.0 |
179.9 |
C2 |
C1 |
C6 |
C5 |
360.0 |
0.3 |
C6 |
C1 |
C2 |
H1 |
180.0 |
179.9 |
C4 |
C3 |
C2 |
C1 |
0.1 |
359.7 |
C1 |
C2 |
C3 |
H3 |
180.1 |
180.0 |
C3 |
C2 |
C1 |
H2 |
180.0 |
180.1 |
CL1 |
C10 |
C11 |
C9 |
180.1 |
180.1 |
C10 |
C11 |
C12 |
H12 |
180.0 |
180.3 |
C12 |
C11 |
C10 |
H11 |
180.0 |
179.9 |
C11 |
C10 |
C9 |
H9 |
180.0 |
180.0 |
C21 |
C16 |
N1 |
C15 |
23.8 |
33.1 |
N1 |
C16 |
C21 |
C17 |
179.8 |
180.0 |
C21 |
C16 |
N1 |
HN1 |
203.7 |
213.0 |
C16 |
C21 |
C20 |
C19 |
360.0 |
0.0 |
C20 |
C21 |
C16 |
H21 |
180.0 |
180.2 |
C16 |
C21 |
C20 |
H20 |
180.0 |
180.0 |
C21 |
C16 |
C17 |
C18 |
359.9 |
0.0 |
C21 |
C16 |
C17 |
H17 |
179.9 |
180.0 |
C20 |
C21 |
C16 |
C17 |
0.0 |
360.0 |
C16 |
C21 |
C20 |
H21 |
180.0 |
179.8 |
C21 |
C20 |
C19 |
C18 |
360.0 |
360.0 |
C19 |
C20 |
C21 |
H20 |
180.0 |
180.0 |
C21 |
C20 |
C19 |
H19 |
180.0 |
179.9 |
O2 |
C14 |
C15 |
H14 |
120.0 |
120.1 |
O2 |
C14 |
C15 |
H14A |
240.7 |
240.0 |
O3 |
C15 |
C14 |
N1 |
179.8 |
180.1 |
C14 |
C15 |
N1 |
HN1 |
12.9 |
5.4 |
H14 |
C14 |
C15 |
H14A |
120.8 |
119.9 |
C17 |
C16 |
N1 |
C15 |
203.6 |
213.1 |
N1 |
C16 |
C17 |
C21 |
180.2 |
180.0 |
C17 |
C16 |
N1 |
HN1 |
23.5 |
33.0 |
C17 |
C16 |
C21 |
C20 |
0.0 |
360.0 |
C17 |
C16 |
C21 |
H21 |
180.0 |
179.7 |
C16 |
C17 |
C18 |
C19 |
0.1 |
0.0 |
C18 |
C17 |
C16 |
H17 |
180.0 |
180.0 |
C16 |
C17 |
C18 |
H18 |
180.1 |
180.0 |
C6 |
C5 |
C4 |
H5 |
180.0 |
180.1 |
C5 |
C4 |
C3 |
C2 |
0.1 |
0.3 |
C3 |
C4 |
C5 |
H4 |
180.0 |
180.1 |
C5 |
C4 |
C3 |
H3 |
180.1 |
179.9 |
C1 |
C2 |
C3 |
C4 |
0.1 |
359.7 |
C5 |
C4 |
C3 |
H4 |
180.0 |
179.9 |
C3 |
C4 |
C5 |
H5 |
179.8 |
180.0 |
C2 |
C3 |
C4 |
H3 |
180.0 |
180.3 |
C4 |
C3 |
C2 |
H2 |
180.1 |
179.8 |
C19 |
C20 |
C21 |
H21 |
180.0 |
180.3 |
C21 |
C20 |
C19 |
H20 |
180.0 |
180.0 |
C17 |
C18 |
C19 |
C20 |
360.0 |
0.0 |
C20 |
C19 |
C18 |
H18 |
180.0 |
180.0 |
C18 |
C19 |
C20 |
H19 |
180.0 |
180.0 |
C16 |
C17 |
C18 |
H17 |
180.0 |
180.0 |
C20 |
C19 |
C18 |
C17 |
360.0 |
0.0 |
C19 |
C18 |
C17 |
H18 |
180.0 |
180.0 |
C17 |
C18 |
C19 |
H19 |
180.0 |
180.0 |
C18 |
C19 |
C20 |
H20 |
180.0 |
180.0 |
C20 |
C19 |
C18 |
H19 |
180.0 |
180.0 |
C19 |
C18 |
C17 |
H17 |
180.1 |
180.0 |
C17 |
C18 |
C19 |
H18 |
180.0 |
180.0 |
C3 |
C2 |
C1 |
H1 |
179.9 |
180.1 |
C1 |
C2 |
C3 |
H2 |
180.0 |
179.9 |
C2 |
C3 |
C4 |
H4 |
180.1 |
180.3 |
C4 |
C3 |
C2 |
H3 |
180.0 |
179.7 |
C16 |
N1 |
HN1 |
C15 |
180.0 |
180.0 |
HN1 |
N1 |
C16 |
C21 |
203.7 |
213.0 |
HN1 |
N1 |
C16 |
C17 |
23.5 |
33.0 |
HN1 |
N1 |
C15 |
C14 |
12.9 |
5.4 |
C13 |
C12 |
H12 |
C11 |
180.0 |
180.2 |
H12 |
C12 |
C13 |
C8 |
179.9 |
179.8 |
H12 |
C12 |
C11 |
C10 |
180.0 |
180.3 |
H12 |
C12 |
C11 |
H11 |
360.0 |
0.2 |
H9 |
C9 |
C8 |
C7 |
359.9 |
360.0 |
H9 |
C9 |
C8 |
C13 |
179.8 |
180.0 |
C8 |
C9 |
H9 |
C10 |
180.0 |
180.0 |
H9 |
C9 |
C10 |
C11 |
180.0 |
180.0 |
H1 |
C1 |
C6 |
C5 |
179.9 |
180.2 |
C6 |
C1 |
H1 |
C2 |
180.0 |
180.1 |
H1 |
C1 |
C2 |
C3 |
179.9 |
180.1 |
H1 |
C1 |
C2 |
H2 |
359.9 |
0.0 |
C16 |
C21 |
H21 |
C20 |
180.0 |
180.2 |
H21 |
C21 |
C16 |
C17 |
180.0 |
179.7 |
H21 |
C21 |
C20 |
C19 |
180.0 |
180.3 |
H21 |
C21 |
C20 |
H20 |
0.0 |
0.2 |
O2 |
C14 |
H14 |
C15 |
238.5 |
239.9 |
O2 |
C14 |
H14 |
H14A |
119.3 |
120.0 |
C15 |
C14 |
H14 |
H14A |
240.7 |
240.1 |
O2 |
C14 |
H14A |
C15 |
121.0 |
120.0 |
O2 |
C14 |
H14A |
H14 |
240.5 |
240.0 |
C15 |
C14 |
H14A |
H14 |
119.5 |
119.9 |
C5 |
C4 |
H4 |
C3 |
180.0 |
180.1 |
H4 |
C4 |
C5 |
H5 |
359.8 |
359.9 |
H4 |
C4 |
C3 |
C2 |
180.1 |
180.3 |
H4 |
C4 |
C3 |
H3 |
0.1 |
0.0 |
C12 |
C11 |
H11 |
C10 |
180.0 |
180.1 |
H11 |
C11 |
C12 |
H12 |
360.0 |
0.2 |
C21 |
C20 |
H20 |
C19 |
180.0 |
180.0 |
H20 |
C20 |
C21 |
H21 |
0.0 |
0.2 |
H20 |
C20 |
C19 |
C18 |
180.0 |
180.0 |
H20 |
C20 |
C19 |
H19 |
360.0 |
360.0 |
C16 |
C17 |
H17 |
C18 |
180.0 |
180.0 |
H17 |
C17 |
C18 |
C19 |
180.1 |
180.0 |
H17 |
C17 |
C18 |
H18 |
0.1 |
360.0 |
C6 |
C5 |
H5 |
C4 |
180.0 |
179.9 |
H5 |
C5 |
C4 |
C3 |
179.8 |
180.0 |
H5 |
C5 |
C4 |
H4 |
359.8 |
359.9 |
C17 |
C18 |
H18 |
C19 |
180.0 |
180.0 |
H18 |
C18 |
C17 |
H17 |
0.1 |
360.0 |
H18 |
C18 |
C19 |
H19 |
0.0 |
0.0 |
C4 |
C3 |
H3 |
C2 |
180.0 |
180.3 |
H3 |
C3 |
C4 |
H4 |
0.1 |
0.0 |
H3 |
C3 |
C2 |
H2 |
0.1 |
0.1 |
C20 |
C19 |
H19 |
C18 |
180.0 |
180.0 |
H19 |
C19 |
C20 |
H20 |
360.0 |
360.0 |
H19 |
C19 |
C18 |
H18 |
0.0 |
0.0 |
C1 |
C2 |
H2 |
C3 |
180.0 |
180.1 |
H2 |
C2 |
C1 |
H1 |
359.9 |
0.0 |
H2 |
C2 |
C3 |
H3 |
0.1 |
0.1 |