PDB Chemical Component GDU

Ideal Model

Chemical Description

Name GALACTOSE-URIDINE-5'-DIPHOSPHATE
Synonyms UDP-D-GALACTOPYRANOSE
Formula C15 H24 N2 O17 P2
Formal charge 0
Molecular weight 566.302 g/mol
Component type NON-POLYMER

Chemical features

Atom count 60
Chiral atom count 11
Chiral atoms C1D C2D C3D C4D PA PB C1' C2' C3' C4' C5'
Bond count 62
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl dihydrogen diphosphate (non-preferred name)
Systematic name (OpenEye OEToolkits) [(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl [hydroxy-[(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-phosphoryl] hydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) OC[C@H]1O[C@H](O[P@@](O)(=O)O[P@@](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N3C=CC(=O)NC3=O)[C@H](O)[C@@H](O)[C@H]1O
SMILES (CACTVS) OC[CH]1O[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=O)NC3=O)[CH](O)[CH](O)[CH]1O
Stereo SMILES (OpenEye) C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)(O)O[P@@](=O)(O)O[C@@H]3[C@@H]([C@H]([C@H]([C@H](O3)CO)O)O)O)O)O
InChI descriptor InChI=1S/C15H24N2O17P2/c18-3-5-8(20)10(22)12(24)14(32-5)33-36(28,29)34-35(26,27)30-4-6-9(21)11(23)13(31-6)17-2-1-7(19)16-15(17)25/h1-2,5-6,8-14,18,20-24H,3-4H2,(H,26,27)(H,28,29)(H,16,19,25)/t5-,6-,8+,9-,10+,11-,12-,13-,14-/m1/s1
InChIKey descriptor HSCJRCZFDFQWRP-ABVWGUQPSA-N

Status Information

Last modified 2021-03-01
Created 1999-07-08
Release status REL
Model PDB code 1GUP
Processing site PDBJ