PDB Chemical Component GDP

Ideal Model

Chemical Description

Name GUANOSINE-5'-DIPHOSPHATE
Formula C10 H15 N5 O11 P2
Formal charge 0
Molecular weight 443.201 g/mol
Component type RNA LINKING
Nonstandard Parent Id G

Chemical features

Atom count 43
Chiral atom count 4
Chiral atoms C4' C3' C2' C1'
Observed leaving atoms HO3'
Bond count 45
Aromatic bond count 5

Chemical Identifiers

Systematic name (ACDLabs) guanosine 5'-(trihydrogen diphosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,4R,5R)-5-(2-azanyl-6-oxidanylidene-1H-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl phosphono hydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
SMILES (CACTVS) NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
Stereo SMILES (OpenEye) c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)OP(=O)(O)O)O)O)N=C(NC2=O)N
InChI descriptor InChI=1S/C10H15N5O11P2/c11-10-13-7-4(8(18)14-10)12-2-15(7)9-6(17)5(16)3(25-9)1-24-28(22,23)26-27(19,20)21/h2-3,5-6,9,16-17H,1H2,(H,22,23)(H2,19,20,21)(H3,11,13,14,18)/t3-,5-,6-,9-/m1/s1
InChIKey descriptor QGWNDRXFNXRZMB-UUOKFMHZSA-N

Status Information

Last modified 2014-05-12
Created 1999-07-08
Release status REL
Model PDB code 1EK0
Processing site EBI