PDB Chemical Component GDO

Ideal Model

Chemical Description

Name 3'-deoxy-guanosine 5'-monophosphate
Formula C10 H14 N5 O7 P
Formal charge 0
Molecular weight 347.221 g/mol
Component type RNA LINKING
Nonstandard Parent Id G

Chemical features

Atom count 37
Chiral atom count 3
Chiral atoms C4' C2' C1'
Observed leaving atoms OP3
Bond count 39
Aromatic bond count 5

Chemical Identifiers

Systematic name (ACDLabs) 3'-deoxy-5'-guanylic acid
Systematic name (OpenEye OEToolkits) [(2S,4R,5R)-5-(2-azanyl-6-oxidanylidene-1H-purin-9-yl)-4-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P](O)(O)=O)C[C@H]3O
SMILES (CACTVS) NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(O)=O)C[CH]3O
Stereo SMILES (OpenEye) c1nc2c(n1[C@H]3[C@@H](C[C@H](O3)COP(=O)(O)O)O)N=C(NC2=O)N
InChI descriptor InChI=1S/C10H14N5O7P/c11-10-13-7-6(8(17)14-10)12-3-15(7)9-5(16)1-4(22-9)2-21-23(18,19)20/h3-5,9,16H,1-2H2,(H2,18,19,20)(H3,11,13,14,17)/t4-,5+,9+/m0/s1
InChIKey descriptor FDFODSATEZEUMJ-OBXARNEKSA-N

Status Information

Last modified 2012-04-13
Created 2012-04-11
Release status REL
Model PDB code 4E78
Processing site RCSB