PDB Chemical Component GDE
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for GDE
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| OAA |
CAH |
1.273 |
1.348 |
| OAB |
CAH |
1.262 |
1.214 |
| OAC |
CAI |
1.361 |
1.360 |
| OAD |
CAJ |
1.345 |
1.360 |
| OAE |
CAL |
1.387 |
1.358 |
| CAF |
CAI |
1.393 |
1.383 |
| CAF |
CAK |
1.391 |
1.397 |
| CAG |
CAJ |
1.384 |
1.381 |
| CAG |
CAK |
1.385 |
1.398 |
| CAH |
CAK |
1.513 |
1.476 |
| CAI |
CAL |
1.390 |
1.393 |
| CAJ |
CAL |
1.395 |
1.392 |
| OAA |
HOAA |
0.950 |
0.967 |
| OAC |
HOAC |
0.950 |
0.967 |
| OAD |
HOAD |
0.950 |
0.968 |
| OAE |
HOAE |
0.950 |
0.966 |
| CAF |
HAF |
1.080 |
1.080 |
| CAG |
HAG |
1.080 |
1.080 |
Bond Angles for GDE
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OAA |
CAH |
OAB |
121.8 |
120.0 |
| OAA |
CAH |
CAK |
119.5 |
120.0 |
| CAH |
OAA |
HOAA |
109.5 |
117.0 |
| OAB |
CAH |
CAK |
118.6 |
120.0 |
| OAC |
CAI |
CAF |
119.9 |
120.0 |
| OAC |
CAI |
CAL |
119.6 |
120.0 |
| CAI |
OAC |
HOAC |
109.5 |
114.0 |
| OAD |
CAJ |
CAG |
116.7 |
120.0 |
| OAD |
CAJ |
CAL |
121.6 |
119.9 |
| CAJ |
OAD |
HOAD |
109.5 |
114.0 |
| OAE |
CAL |
CAI |
119.5 |
119.9 |
| OAE |
CAL |
CAJ |
122.6 |
120.0 |
| CAL |
OAE |
HOAE |
109.5 |
114.0 |
| CAI |
CAF |
CAK |
121.2 |
119.9 |
| CAF |
CAI |
CAL |
120.4 |
120.0 |
| CAI |
CAF |
HAF |
119.4 |
120.0 |
| CAF |
CAK |
CAG |
118.5 |
119.9 |
| CAF |
CAK |
CAH |
121.9 |
120.0 |
| CAK |
CAF |
HAF |
119.4 |
120.1 |
| CAJ |
CAG |
CAK |
120.4 |
119.9 |
| CAG |
CAJ |
CAL |
121.6 |
120.1 |
| CAJ |
CAG |
HAG |
119.8 |
120.1 |
| CAG |
CAK |
CAH |
119.5 |
120.1 |
| CAK |
CAG |
HAG |
119.8 |
120.0 |
| CAI |
CAL |
CAJ |
117.9 |
120.1 |
Torsion Angles for GDE
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OAB |
CAH |
OAA |
CAK |
183.9 |
180.1 |
| CAF |
CAK |
CAH |
OAA |
14.1 |
180.0 |
| CAG |
CAK |
CAH |
OAA |
196.1 |
0.0 |
| OAA |
CAH |
OAB |
CAK |
176.1 |
179.9 |
| OAB |
CAH |
OAA |
HOAA |
360.0 |
0.1 |
| CAF |
CAK |
CAH |
OAB |
190.3 |
360.0 |
| CAG |
CAK |
CAH |
OAB |
12.3 |
180.0 |
| OAE |
CAL |
CAI |
OAC |
359.6 |
0.0 |
| OAC |
CAI |
CAF |
CAK |
180.6 |
180.0 |
| CAF |
CAI |
OAC |
CAL |
179.3 |
180.0 |
| OAC |
CAI |
CAF |
HAF |
0.6 |
359.7 |
| OAC |
CAI |
CAL |
CAJ |
179.9 |
180.0 |
| OAE |
CAL |
CAJ |
OAD |
359.9 |
0.0 |
| OAD |
CAJ |
CAG |
CAK |
180.4 |
180.0 |
| CAG |
CAJ |
OAD |
CAL |
180.6 |
180.0 |
| OAD |
CAJ |
CAG |
HAG |
0.4 |
360.0 |
| CAI |
CAL |
CAJ |
OAD |
179.6 |
180.0 |
| OAC |
CAI |
CAL |
OAE |
359.6 |
0.0 |
| OAD |
CAJ |
CAL |
OAE |
359.9 |
0.0 |
| CAF |
CAI |
CAL |
OAE |
180.2 |
180.0 |
| CAG |
CAJ |
CAL |
OAE |
179.3 |
180.0 |
| CAI |
CAL |
OAE |
CAJ |
180.4 |
180.0 |
| OAC |
CAI |
CAF |
CAL |
180.7 |
180.0 |
| CAF |
CAI |
OAC |
HOAC |
180.0 |
90.0 |
| OAE |
CAL |
CAI |
CAF |
180.2 |
180.0 |
| CAI |
CAF |
CAK |
CAG |
0.1 |
0.0 |
| CAI |
CAF |
CAK |
CAH |
182.0 |
180.0 |
| CAK |
CAF |
CAI |
HAF |
180.0 |
180.3 |
| CAF |
CAI |
CAL |
CAJ |
0.6 |
0.0 |
| OAA |
CAH |
CAK |
CAF |
14.1 |
180.0 |
| OAB |
CAH |
CAK |
CAF |
190.3 |
360.0 |
| CAK |
CAF |
CAI |
CAL |
359.9 |
360.0 |
| CAI |
CAF |
CAK |
HAF |
180.0 |
179.7 |
| CAJ |
CAG |
CAK |
CAF |
359.5 |
0.0 |
| CAG |
CAK |
CAF |
CAH |
178.1 |
180.0 |
| CAF |
CAK |
CAG |
HAG |
179.5 |
180.0 |
| OAD |
CAJ |
CAG |
CAL |
179.4 |
180.0 |
| CAG |
CAJ |
OAD |
HOAD |
180.0 |
89.9 |
| OAE |
CAL |
CAJ |
CAG |
179.3 |
180.0 |
| CAF |
CAK |
CAG |
CAJ |
359.5 |
0.0 |
| CAJ |
CAG |
CAK |
CAH |
177.6 |
180.0 |
| CAK |
CAG |
CAJ |
HAG |
180.0 |
180.0 |
| CAI |
CAL |
CAJ |
CAG |
358.9 |
0.0 |
| OAA |
CAH |
CAK |
CAG |
196.1 |
0.0 |
| OAB |
CAH |
CAK |
CAG |
12.3 |
180.0 |
| CAF |
CAK |
CAG |
CAH |
181.9 |
180.0 |
| CAG |
CAK |
CAF |
HAF |
180.1 |
180.3 |
| CAK |
CAG |
CAJ |
CAL |
1.0 |
360.0 |
| CAJ |
CAG |
CAK |
HAG |
180.0 |
180.0 |
| OAA |
CAH |
CAK |
OAB |
183.8 |
180.1 |
| CAK |
CAH |
OAA |
HOAA |
176.1 |
180.0 |
| CAF |
CAK |
CAH |
CAG |
178.0 |
180.0 |
| CAH |
CAK |
CAF |
HAF |
2.0 |
0.2 |
| CAH |
CAK |
CAG |
HAG |
357.6 |
0.0 |
| OAC |
CAI |
CAL |
CAF |
179.3 |
180.0 |
| CAL |
CAI |
OAC |
HOAC |
0.7 |
270.0 |
| OAD |
CAJ |
CAL |
CAI |
179.6 |
180.0 |
| OAE |
CAL |
CAI |
CAJ |
179.7 |
180.0 |
| CAI |
CAL |
OAE |
HOAE |
180.0 |
90.0 |
| CAL |
CAI |
CAF |
CAK |
359.9 |
360.0 |
| CAL |
CAI |
CAF |
HAF |
179.9 |
179.7 |
| CAG |
CAJ |
CAL |
CAI |
358.9 |
0.0 |
| OAD |
CAJ |
CAL |
CAG |
180.6 |
180.0 |
| CAL |
CAJ |
OAD |
HOAD |
359.4 |
269.9 |
| OAE |
CAL |
CAJ |
CAI |
180.4 |
180.0 |
| CAJ |
CAL |
OAE |
HOAE |
359.6 |
270.0 |
| CAL |
CAJ |
CAG |
CAK |
1.0 |
360.0 |
| CAL |
CAJ |
CAG |
HAG |
181.0 |
180.0 |
| HOAA |
OAA |
CAH |
OAB |
360.0 |
0.1 |
| HOAA |
OAA |
CAH |
CAK |
176.1 |
180.0 |
| HOAC |
OAC |
CAI |
CAF |
180.0 |
90.0 |
| HOAC |
OAC |
CAI |
CAL |
0.7 |
270.0 |
| HOAD |
OAD |
CAJ |
CAG |
180.0 |
89.9 |
| HOAD |
OAD |
CAJ |
CAL |
359.4 |
269.9 |
| HOAE |
OAE |
CAL |
CAI |
180.0 |
90.0 |
| HOAE |
OAE |
CAL |
CAJ |
359.6 |
270.0 |
| CAI |
CAF |
HAF |
CAK |
180.0 |
180.3 |
| HAF |
CAF |
CAI |
CAL |
179.9 |
179.7 |
| HAF |
CAF |
CAK |
CAG |
180.1 |
180.3 |
| HAF |
CAF |
CAK |
CAH |
2.0 |
0.2 |
| CAJ |
CAG |
HAG |
CAK |
180.0 |
180.0 |
| HAG |
CAG |
CAJ |
CAL |
181.0 |
180.0 |
| HAG |
CAG |
CAK |
CAH |
357.6 |
0.0 |