PDB Chemical Component GDA

Ideal Model

Chemical Description

Name 4-amino-4-deoxy-beta-D-glucopyranose
Synonyms 4-amino-4-deoxy-beta-D-glucose; 4-amino-4-deoxy-D-glucose; 4-amino-4-deoxy-glucose
Formula C6 H13 N O5
Formal charge 0
Molecular weight 179.171 g/mol
Component type D-saccharide, alpha linking

Chemical features

Atom count 25
Chiral atom count 5
Chiral atoms C1 C2 C3 C4 C5
Observed leaving atoms O1 HO2 HO3 HO6 HO1
Bond count 25
Aromatic bond count 0

Chemical Identifiers

Systematic name (OpenEye OEToolkits) (2~{R},3~{R},4~{S},5~{S},6~{S})-5-azanyl-6-(hydroxymethyl)oxane-2,3,4-triol

Chemical Descriptors

Stereo SMILES (CACTVS) N[C@H]1[C@H](O)[C@@H](O)[C@H](O)O[C@@H]1CO
SMILES (CACTVS) N[CH]1[CH](O)[CH](O)[CH](O)O[CH]1CO
Stereo SMILES (OpenEye) C([C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)O)O)O)N)O
InChI descriptor InChI=1S/C6H13NO5/c7-3-2(1-8)12-6(11)5(10)4(3)9/h2-6,8-11H,1,7H2/t2-,3-,4+,5-,6-/m1/s1
InChIKey descriptor BXZVZSSSRTUQJP-VFUOTHLCSA-N

Status Information

Last modified 2020-07-17
Created 2003-02-07
Release status REL
Model PDB code 1OCB
Processing site PDBE