PDB Chemical Component GDA

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GDA

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O2	C2	1.427	1.429
C1	C2	1.515	1.532
C1	O5	1.401	1.429
C3	C2	1.536	1.532
C3	O3	1.430	1.428
C3	C4	1.542	1.532
C5	O5	1.437	1.429
C5	C4	1.526	1.531
C5	C6	1.555	1.530
N4	C4	1.487	1.469
O6	C6	1.432	1.430
C1	O1	1.414	1.429
C1	H1	1.100	1.090
C2	H2	1.100	1.090
C3	H3	1.100	1.091
C4	H4	1.100	1.090
C5	H5	1.100	1.091
C6	H61	1.100	1.091
C6	H62	1.100	1.090
N4	H8	1.000	1.010
N4	H9	1.000	1.009
O2	HO2	0.950	0.967
O3	HO3	0.950	0.968
O6	HO6	0.950	0.967
O1	HO1	0.950	0.967

Bond Angles for GDA

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O2	C2	H2	109.0	109.6
C2	C1	O5	109.9	109.4
C2	C1	O1	110.8	109.4
C2	C1	H1	108.4	109.5
C1	C2	H2	107.8	109.5
C1	O5	C5	116.4	114.1
O5	C1	O1	108.2	109.5
O5	C1	H1	109.9	109.5
C3	C2	H2	107.6	109.5
C4	C3	O3	112.5	109.6
O3	C3	H3	109.0	109.5
C3	O3	HO3	109.5	114.1
C4	C3	H3	107.6	109.6
C3	C4	H4	107.8	109.5
C6	C5	O5	107.5	109.5
O5	C5	H5	110.4	109.5
C5	C4	H4	108.0	109.6
C6	C5	H5	108.8	109.5
C5	C6	H61	109.6	109.5
C5	C6	H62	109.6	109.5
N4	C4	H4	108.5	109.5
O6	C6	H61	109.6	109.5
O6	C6	H62	109.6	109.4
O1	C1	H1	109.7	109.5
C1	O1	HO1	109.5	114.0
H61	C6	H62	109.5	109.5
H8	N4	H9	109.5	111.0

Torsion Angles for GDA

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O2	C2	C1	O5	178.8	177.6
O2	C2	C1	O1	298.3	297.5
O2	C2	C1	H1	58.7	57.5
C1	C2	O2	H2	117.7	120.2
C3	C2	O2	H2	240.8	239.9
O2	C2	C1	H2	241.6	239.8
C2	C1	O5	C5	297.6	298.8
O5	C1	C2	O1	240.5	240.0
O5	C1	C2	H1	120.1	120.0
C3	C2	C1	H2	117.4	119.9
O1	C1	C2	H1	239.6	240.0
C2	C1	O1	HO1	180.0	179.9
C2	C1	O5	O1	121.1	119.9
C2	C1	O5	H1	240.8	240.0
O5	C1	C2	H2	297.3	297.7
C6	C5	O5	C1	183.3	181.2
C1	O5	C5	H5	301.8	301.2
O1	C1	O5	H1	119.7	120.1
O5	C1	O1	HO1	300.5	299.8
O2	C2	C3	H2	120.0	120.2
C3	C2	C1	O5	54.7	57.6
C3	C2	C1	O1	174.2	177.6
C3	C2	C1	H1	294.6	297.6
C1	C2	C3	H2	242.5	240.1
O3	C3	C2	H2	302.4	303.0
C4	C3	O3	H3	119.3	120.3
O3	C3	C4	H4	55.2	56.9
C4	C3	C2	H2	66.7	62.9
O3	C3	C4	H3	239.9	239.8
C4	C3	O3	HO3	56.8	180.5
C5	C4	C3	H4	118.4	119.9
N4	C4	C3	H4	241.6	239.9
C5	O5	C1	O1	176.5	178.9
C5	O5	C1	H1	56.8	58.8
O5	C5	C4	H4	65.0	62.3
C6	C5	O5	H5	241.5	239.9
O5	C5	C6	H61	181.3	185.0
O5	C5	C6	H62	301.5	305.0
C1	O5	C5	C4	61.1	61.2
C5	C4	C3	O3	173.5	176.9
C5	C4	C3	H3	293.6	297.1
C3	C4	C5	H4	241.7	240.1
N4	C4	C5	H4	118.4	120.2
C1	O5	C5	C6	183.3	181.2
O5	C5	C6	H5	119.5	120.1
C6	C5	C4	H4	306.2	302.3
O6	C6	C5	H61	240.1	240.0
O6	C6	C5	H62	119.9	120.0
H61	C6	C5	H62	239.8	240.0
N4	C4	C3	O3	296.7	296.8
N4	C4	C3	H3	56.9	57.0
C3	C4	N4	H4	118.0	120.1
C5	C4	N4	H4	241.9	239.8
O6	C6	C5	H5	301.9	304.9
C5	C6	O6	H61	119.9	120.0
C5	C6	O6	H62	240.1	240.0
H61	C6	O6	H62	120.1	120.0
C2	C1	O1	O5	239.5	240.1
C2	C1	O1	H1	119.6	120.0
O1	C1	C2	H2	56.8	57.7
O1	C1	O5	C5	176.5	178.9
O5	C1	O1	H1	240.1	239.9
C2	C1	H1	O5	120.1	119.9
C2	C1	H1	O1	238.9	240.0
H1	C1	C2	H2	177.2	177.7
H1	C1	O5	C5	56.8	58.8
O5	C1	H1	O1	118.8	120.1
H1	C1	O1	HO1	60.4	60.0
H2	C2	C1	O5	297.3	297.7
H2	C2	C1	O1	56.8	57.7
H2	C2	C1	H1	177.2	177.7
H3	C3	C2	H2	184.1	182.9
C4	C3	H3	O3	237.7	239.8
H3	C3	O3	HO3	297.5	60.2
H3	C3	C4	H4	175.3	177.1
H4	C4	C3	O3	55.2	56.9
H4	C4	C3	H3	175.3	177.1
C6	C5	H5	O5	117.7	120.1
H5	C5	C4	H4	185.0	182.3
H5	C5	C6	H61	61.8	64.9
H5	C5	C6	H62	182.0	184.9
H61	C6	C5	O5	181.3	185.0
H61	C6	C5	H5	61.8	64.9
C5	C6	H61	H62	120.3	120.1
O6	C6	H61	H62	239.8	240.1
H62	C6	C5	O5	301.5	305.0
H62	C6	C5	H5	182.0	184.9
C5	C6	H62	H61	239.8	239.9
O6	C6	H62	H61	120.2	120.0
H8	N4	C4	H4	62.0	299.9
H9	N4	C4	H4	182.0	63.8
HO2	O2	C2	H2	62.3	299.9
HO3	O3	C3	H3	297.5	60.2
HO6	O6	C6	H61	60.1	59.9
HO6	O6	C6	H62	300.0	300.0
HO1	O1	C1	H1	60.4	60.0