PDB Chemical Component GD7

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GD7

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C6	1.547	1.530
C1	H11	1.100	1.090
C1	H12	1.100	1.091
C1	H13	1.100	1.089
C2	C6	1.550	1.530
C2	H21	1.100	1.090
C2	H22	1.100	1.090
C2	H23	1.100	1.090
C3	C6	1.540	1.530
C3	H31	1.100	1.090
C3	H32	1.100	1.090
C3	H33	1.100	1.090
C4	C5	1.570	1.531
C4	H41	1.100	1.090
C4	H42	1.100	1.090
C4	H43	1.100	1.090
C5	C6	1.565	1.531
C5	OH	1.454	1.428
C5	H5	1.100	1.090
C7	P1	1.794	1.823
C7	H71	1.100	1.090
C7	H72	1.100	1.090
C7	H73	1.100	1.091
OH	P1	1.649	1.610
P1	O11	1.499	1.480
P1	HP1	1.420	1.420

Bond Angles for GD7

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C6	C1	H11	109.5	109.5
C6	C1	H12	109.5	109.4
C6	C1	H13	109.5	109.5
C1	C6	C2	109.8	109.5
C1	C6	C3	108.9	109.5
C1	C6	C5	110.9	109.4
H11	C1	H12	109.5	109.5
H11	C1	H13	109.5	109.5
H12	C1	H13	109.4	109.5
C6	C2	H21	109.4	109.5
C6	C2	H22	109.5	109.5
C6	C2	H23	109.5	109.5
C2	C6	C3	108.8	109.5
C2	C6	C5	109.8	109.5
H21	C2	H22	109.5	109.5
H21	C2	H23	109.4	109.4
H22	C2	H23	109.5	109.5
C6	C3	H31	109.5	109.5
C6	C3	H32	109.5	109.4
C6	C3	H33	109.5	109.5
C3	C6	C5	108.6	109.4
H31	C3	H32	109.5	109.4
H31	C3	H33	109.5	109.5
H32	C3	H33	109.4	109.5
C5	C4	H41	109.4	109.4
C5	C4	H42	109.5	109.5
C5	C4	H43	109.5	109.5
C4	C5	C6	110.4	109.4
C4	C5	OH	108.5	109.5
C4	C5	H5	109.5	109.5
H41	C4	H42	109.5	109.5
H41	C4	H43	109.5	109.5
H42	C4	H43	109.5	109.5
C6	C5	OH	109.4	109.5
C6	C5	H5	108.6	109.4
OH	C5	H5	110.5	109.5
C5	OH	P1	112.0	106.8
P1	C7	H71	109.5	109.5
P1	C7	H72	109.4	109.5
P1	C7	H73	109.5	109.4
C7	P1	OH	108.7	109.5
C7	P1	O11	104.4	109.4
C7	P1	HP1	113.5	109.4
H71	C7	H72	109.5	109.5
H71	C7	H73	109.5	109.4
H72	C7	H73	109.5	109.4
OH	P1	O11	110.3	109.5
OH	P1	HP1	107.9	109.5
O11	P1	HP1	112.0	109.5

Torsion Angles for GD7

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
H11	C1	C6	H12	120.0	240.1
H11	C1	C6	H13	240.0	120.1
H12	C1	C6	H13	120.0	240.0
C1	C6	C2	H21	196.9	180.0
C1	C6	C2	H22	76.8	299.9
C1	C6	C2	H23	316.8	60.0
C2	C6	C1	C3	119.0	120.1
C2	C6	C1	C5	238.5	240.0
C1	C6	C3	H31	47.2	300.1
C1	C6	C3	H32	287.2	60.0
C1	C6	C3	H33	167.2	180.0
C3	C6	C1	C5	119.4	119.9
C4	C5	C6	C1	299.3	300.0
C1	C6	C5	OH	58.6	60.0
C1	C6	C5	H5	179.3	180.0
C6	C1	H11	H12	240.0	119.9
C6	C1	H11	H13	120.0	239.9
H11	C1	C6	C2	13.4	300.1
H11	C1	C6	C3	254.3	180.0
H11	C1	C6	C5	134.9	60.1
H12	C1	H11	H13	240.0	120.0
C6	C1	H12	H11	120.0	240.0
C6	C1	H12	H13	240.0	120.0
H12	C1	C6	C2	253.3	60.0
H12	C1	C6	C3	134.3	299.9
H12	C1	C6	C5	14.8	180.0
H11	C1	H12	H13	120.0	240.0
C6	C1	H13	H11	240.0	120.1
C6	C1	H13	H12	120.0	240.1
H13	C1	C6	C2	133.3	180.0
H13	C1	C6	C3	14.3	59.9
H13	C1	C6	C5	254.9	300.0
H11	C1	H13	H12	240.0	120.0
C2	C6	C1	H11	13.4	300.1
C2	C6	C1	H12	253.3	60.0
C2	C6	C1	H13	133.3	180.0
C1	C6	C2	C3	240.9	239.9
C1	C6	C2	C5	122.2	120.0
H21	C2	C6	H22	120.0	240.0
H21	C2	C6	H23	240.1	120.0
H22	C2	C6	H23	120.0	240.0
C2	C6	C3	H31	287.5	180.0
C2	C6	C3	H32	167.5	299.9
C2	C6	C3	H33	47.6	60.0
C3	C6	C2	C5	241.3	240.0
C4	C5	C6	C2	60.9	60.0
C2	C6	C5	OH	180.2	180.0
C2	C6	C5	H5	300.8	300.0
C6	C2	H21	H22	240.0	120.0
C6	C2	H21	H23	120.0	240.0
H21	C2	C6	C3	316.0	300.0
H21	C2	C6	C5	74.7	60.0
H22	C2	H21	H23	240.0	120.0
C6	C2	H22	H21	120.0	240.0
C6	C2	H22	H23	239.9	120.1
H22	C2	C6	C3	195.9	60.0
H22	C2	C6	C5	314.6	180.0
H21	C2	H22	H23	120.0	240.1
C6	C2	H23	H21	240.1	120.0
C6	C2	H23	H22	120.0	240.0
H23	C2	C6	C3	75.9	180.0
H23	C2	C6	C5	194.6	300.0
H21	C2	H23	H22	240.0	120.0
C3	C6	C1	H11	254.3	180.0
C3	C6	C1	H12	134.3	299.9
C3	C6	C1	H13	14.3	59.9
C1	C6	C3	C2	119.7	120.1
C1	C6	C3	C5	239.1	240.1
C3	C6	C2	H21	316.0	300.0
C3	C6	C2	H22	195.9	60.0
C3	C6	C2	H23	75.9	180.0
C2	C6	C3	C5	119.4	120.0
H31	C3	C6	H32	120.0	240.0
H31	C3	C6	H33	240.0	120.0
H32	C3	C6	H33	120.0	240.0
C4	C5	C6	C3	179.7	180.0
C3	C6	C5	OH	299.0	300.0
C3	C6	C5	H5	59.7	60.0
C6	C3	H31	H32	240.0	120.0
C6	C3	H31	H33	120.0	240.0
H31	C3	C6	C5	168.1	60.0
H32	C3	H31	H33	240.0	120.0
C6	C3	H32	H31	120.0	240.0
C6	C3	H32	H33	240.0	120.0
H32	C3	C6	C5	48.1	179.9
H31	C3	H32	H33	120.0	240.0
C6	C3	H33	H31	240.0	120.0
C6	C3	H33	H32	120.0	240.0
H33	C3	C6	C5	288.1	300.0
H31	C3	H33	H32	240.0	120.0
C1	C6	C5	C4	299.3	300.0
C2	C6	C5	C4	60.9	60.0
C3	C6	C5	C4	179.7	180.0
H41	C4	C5	H42	120.0	240.0
H41	C4	C5	H43	240.0	120.0
H42	C4	C5	H43	120.0	239.9
C6	C5	C4	OH	119.9	120.0
C6	C5	C4	H5	240.5	240.1
OH	C5	C4	H5	120.7	120.1
C4	C5	OH	P1	297.0	240.0
C5	C4	H41	H42	240.0	120.0
C5	C4	H41	H43	120.0	240.0
H41	C4	C5	C6	311.9	180.0
H41	C4	C5	OH	192.0	60.1
H41	C4	C5	H5	71.3	300.0
H42	C4	H41	H43	240.0	120.0
C5	C4	H42	H41	120.0	240.1
C5	C4	H42	H43	240.0	120.0
H42	C4	C5	C6	191.9	300.0
H42	C4	C5	OH	72.0	180.0
H42	C4	C5	H5	311.3	59.9
H41	C4	H42	H43	120.0	240.0
C5	C4	H43	H41	240.0	119.9
C5	C4	H43	H42	120.0	240.0
H43	C4	C5	C6	71.9	60.1
H43	C4	C5	OH	312.0	300.1
H43	C4	C5	H5	191.3	180.0
H41	C4	H43	H42	240.0	120.0
C5	C6	C1	H11	134.9	60.1
C5	C6	C1	H12	14.8	180.0
C5	C6	C1	H13	254.9	300.0
C1	C6	C5	C2	238.5	240.0
C1	C6	C5	C3	119.6	120.0
C5	C6	C2	H21	74.7	60.0
C5	C6	C2	H22	314.6	180.0
C5	C6	C2	H23	194.6	300.0
C2	C6	C5	C3	241.2	240.0
C5	C6	C3	H31	168.1	60.0
C5	C6	C3	H32	48.1	179.9
C5	C6	C3	H33	288.1	300.0
C6	C5	C4	H41	311.9	180.0
C6	C5	C4	H42	191.9	300.0
C6	C5	C4	H43	71.9	60.1
C4	C5	C6	OH	240.7	240.0
C4	C5	C6	H5	120.0	120.0
OH	C5	C6	H5	239.3	239.9
C6	C5	OH	P1	176.5	120.0
OH	C5	C4	H41	192.0	60.1
OH	C5	C4	H42	72.0	180.0
OH	C5	C4	H43	312.0	300.1
C4	C5	OH	C6	120.5	119.9
C4	C5	OH	H5	239.9	239.9
C6	C5	OH	H5	119.5	120.0
C7	P1	OH	C5	291.4	180.0
C5	OH	P1	O11	177.4	60.0
C5	OH	P1	HP1	54.8	300.0
H5	C5	C4	H41	71.3	300.0
H5	C5	C4	H42	311.3	59.9
H5	C5	C4	H43	191.3	180.0
C4	C5	H5	C6	239.4	240.1
C4	C5	H5	OH	119.4	120.0
C6	C5	H5	OH	240.0	240.0
H5	C5	OH	P1	57.0	0.0
C5	OH	P1	C7	291.4	180.0
H71	C7	P1	H72	120.0	239.9
H71	C7	P1	H73	240.0	119.9
H72	C7	P1	H73	120.0	240.0
OH	P1	C7	O11	242.2	240.0
OH	P1	C7	HP1	120.0	120.0
O11	P1	C7	HP1	237.8	240.0
P1	C7	H71	H72	240.0	120.1
P1	C7	H71	H73	120.0	240.1
H71	C7	P1	OH	343.7	59.9
H71	C7	P1	O11	101.5	180.0
H71	C7	P1	HP1	223.7	300.0
H72	C7	H71	H73	240.0	120.0
P1	C7	H72	H71	120.0	239.9
P1	C7	H72	H73	240.0	120.0
H72	C7	P1	OH	223.7	180.0
H72	C7	P1	O11	341.5	300.1
H72	C7	P1	HP1	103.7	60.1
H71	C7	H72	H73	120.0	240.0
P1	C7	H73	H71	240.0	120.0
P1	C7	H73	H72	120.0	240.0
H73	C7	P1	OH	103.7	300.0
H73	C7	P1	O11	221.5	60.0
H73	C7	P1	HP1	343.6	180.0
H71	C7	H73	H72	240.0	120.0
P1	OH	C5	H5	57.0	0.0
OH	P1	C7	H71	343.7	59.9
OH	P1	C7	H72	223.7	180.0
OH	P1	C7	H73	103.7	300.0
C7	P1	OH	O11	114.0	120.0
C7	P1	OH	HP1	236.6	240.0
O11	P1	OH	HP1	122.6	120.1
O11	P1	C7	H71	101.5	180.0
O11	P1	C7	H72	341.5	300.1
O11	P1	C7	H73	221.5	60.0
C7	P1	O11	OH	243.3	240.0
C7	P1	O11	HP1	123.2	119.9
OH	P1	O11	HP1	239.8	240.0
HP1	P1	C7	H71	223.7	300.0
HP1	P1	C7	H72	103.7	60.1
HP1	P1	C7	H73	343.6	180.0
C7	P1	HP1	OH	120.5	120.0
C7	P1	HP1	O11	242.1	240.0
OH	P1	HP1	O11	121.6	120.1