PDB Chemical Component GCS
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for GCS
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
1.524 |
1.530 |
C1 |
O1 |
1.470 |
1.428 |
C1 |
O5 |
1.474 |
1.426 |
C1 |
H1 |
1.114 |
1.090 |
C2 |
C3 |
1.495 |
1.531 |
C2 |
N2 |
1.484 |
1.469 |
C2 |
H2 |
1.115 |
1.090 |
C3 |
C4 |
1.541 |
1.532 |
C3 |
O3 |
1.519 |
1.428 |
C3 |
H3 |
1.114 |
1.090 |
C4 |
C5 |
1.533 |
1.530 |
C4 |
O4 |
1.436 |
1.429 |
C4 |
H4 |
1.115 |
1.090 |
C5 |
C6 |
1.609 |
1.530 |
C5 |
O5 |
1.484 |
1.425 |
C5 |
H5 |
1.114 |
1.090 |
C6 |
O6 |
1.536 |
1.427 |
C6 |
H61 |
1.116 |
1.089 |
C6 |
H62 |
1.115 |
1.090 |
N2 |
HN21 |
1.020 |
1.009 |
N2 |
HN22 |
1.019 |
1.008 |
O1 |
HO1 |
0.949 |
0.967 |
O3 |
HO3 |
0.950 |
0.967 |
O4 |
HO4 |
0.951 |
0.967 |
O6 |
HO6 |
0.951 |
0.967 |
Bond Angles for GCS
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
O1 |
124.9 |
109.5 |
C2 |
C1 |
O5 |
112.7 |
109.8 |
C2 |
C1 |
H1 |
92.9 |
109.4 |
C1 |
C2 |
C3 |
107.6 |
109.2 |
C1 |
C2 |
N2 |
110.7 |
109.6 |
C1 |
C2 |
H2 |
110.4 |
109.5 |
O1 |
C1 |
O5 |
101.7 |
109.4 |
O1 |
C1 |
H1 |
105.9 |
109.4 |
C1 |
O1 |
HO1 |
124.9 |
106.8 |
O5 |
C1 |
H1 |
120.0 |
109.4 |
C1 |
O5 |
C5 |
117.6 |
107.7 |
C3 |
C2 |
N2 |
111.1 |
109.6 |
C3 |
C2 |
H2 |
110.0 |
109.5 |
C2 |
C3 |
C4 |
111.1 |
108.7 |
C2 |
C3 |
O3 |
109.7 |
109.9 |
C2 |
C3 |
H3 |
108.4 |
109.5 |
N2 |
C2 |
H2 |
107.0 |
109.5 |
C2 |
N2 |
HN21 |
110.6 |
106.7 |
C2 |
N2 |
HN22 |
111.7 |
106.7 |
C4 |
C3 |
O3 |
110.0 |
109.6 |
C4 |
C3 |
H3 |
108.0 |
109.6 |
C3 |
C4 |
C5 |
105.3 |
109.1 |
C3 |
C4 |
O4 |
89.0 |
109.7 |
C3 |
C4 |
H4 |
121.2 |
109.5 |
O3 |
C3 |
H3 |
109.6 |
109.5 |
C3 |
O3 |
HO3 |
109.7 |
106.9 |
C5 |
C4 |
O4 |
101.2 |
109.6 |
C5 |
C4 |
H4 |
111.9 |
109.5 |
C4 |
C5 |
C6 |
113.9 |
109.4 |
C4 |
C5 |
O5 |
103.9 |
109.8 |
C4 |
C5 |
H5 |
109.6 |
109.4 |
O4 |
C4 |
H4 |
124.4 |
109.5 |
C4 |
O4 |
HO4 |
89.0 |
106.8 |
C6 |
C5 |
O5 |
107.3 |
109.4 |
C6 |
C5 |
H5 |
106.3 |
109.4 |
C5 |
C6 |
O6 |
112.5 |
109.6 |
C5 |
C6 |
H61 |
111.1 |
109.5 |
C5 |
C6 |
H62 |
111.1 |
109.4 |
O5 |
C5 |
H5 |
116.0 |
109.4 |
O6 |
C6 |
H61 |
111.1 |
109.5 |
O6 |
C6 |
H62 |
111.1 |
109.5 |
C6 |
O6 |
HO6 |
112.4 |
106.9 |
H61 |
C6 |
H62 |
99.2 |
109.4 |
HN21 |
N2 |
HN22 |
111.8 |
106.8 |
Torsion Angles for GCS
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1 |
C1 |
C2 |
O5 |
124.0 |
120.1 |
O1 |
C1 |
C2 |
H1 |
248.3 |
240.1 |
C2 |
C1 |
O1 |
HO1 |
180.0 |
180.0 |
O5 |
C1 |
C2 |
H1 |
124.3 |
120.0 |
C2 |
C1 |
O5 |
C5 |
309.2 |
292.5 |
C3 |
C2 |
C1 |
N2 |
238.4 |
240.0 |
C3 |
C2 |
C1 |
H2 |
120.1 |
119.9 |
C1 |
C2 |
C3 |
C4 |
301.0 |
306.5 |
C1 |
C2 |
C3 |
O3 |
179.2 |
186.5 |
C1 |
C2 |
C3 |
H3 |
59.6 |
66.1 |
N2 |
C2 |
C1 |
H2 |
241.7 |
239.9 |
C1 |
C2 |
N2 |
HN21 |
180.0 |
60.1 |
C1 |
C2 |
N2 |
HN22 |
54.8 |
173.9 |
C2 |
C1 |
O1 |
O5 |
231.4 |
239.6 |
C2 |
C1 |
O1 |
H1 |
105.3 |
119.8 |
O1 |
C1 |
C2 |
C3 |
170.7 |
181.2 |
O1 |
C1 |
C2 |
N2 |
292.3 |
301.3 |
O1 |
C1 |
C2 |
H2 |
50.6 |
61.4 |
O5 |
C1 |
O1 |
H1 |
233.9 |
240.2 |
O1 |
C1 |
O5 |
C5 |
173.2 |
172.3 |
C2 |
C1 |
O5 |
O1 |
136.0 |
120.2 |
C2 |
C1 |
O5 |
H1 |
252.3 |
240.0 |
O5 |
C1 |
C2 |
C3 |
46.7 |
61.1 |
O5 |
C1 |
C2 |
N2 |
168.3 |
181.1 |
O5 |
C1 |
C2 |
H2 |
286.6 |
301.2 |
O1 |
C1 |
O5 |
H1 |
116.2 |
119.8 |
O5 |
C1 |
O1 |
HO1 |
308.7 |
300.4 |
C4 |
C5 |
O5 |
C1 |
58.8 |
67.5 |
C6 |
C5 |
O5 |
C1 |
179.8 |
187.7 |
C1 |
O5 |
C5 |
H5 |
298.5 |
307.5 |
C2 |
C1 |
H1 |
O1 |
232.4 |
240.1 |
C2 |
C1 |
H1 |
O5 |
118.4 |
120.3 |
H1 |
C1 |
C2 |
C3 |
282.4 |
301.1 |
H1 |
C1 |
C2 |
N2 |
44.0 |
61.1 |
H1 |
C1 |
C2 |
H2 |
162.3 |
181.2 |
O1 |
C1 |
H1 |
O5 |
246.0 |
240.2 |
H1 |
C1 |
O1 |
HO1 |
74.8 |
60.2 |
H1 |
C1 |
O5 |
C5 |
57.0 |
52.5 |
C3 |
C2 |
C1 |
O1 |
170.7 |
181.2 |
C3 |
C2 |
C1 |
O5 |
46.7 |
61.1 |
C3 |
C2 |
C1 |
H1 |
282.4 |
301.1 |
C1 |
C2 |
C3 |
N2 |
121.3 |
120.0 |
C1 |
C2 |
C3 |
H2 |
239.6 |
240.1 |
N2 |
C2 |
C3 |
H2 |
118.3 |
120.1 |
C3 |
C2 |
N2 |
HN21 |
299.5 |
179.8 |
C3 |
C2 |
N2 |
HN22 |
174.3 |
293.7 |
C4 |
C3 |
C2 |
O3 |
121.8 |
120.0 |
C4 |
C3 |
C2 |
H3 |
241.4 |
240.3 |
C2 |
C3 |
C4 |
C5 |
70.6 |
53.5 |
C2 |
C3 |
C4 |
O4 |
171.9 |
173.5 |
C2 |
C3 |
C4 |
H4 |
302.5 |
293.7 |
O3 |
C3 |
C2 |
H3 |
119.6 |
120.4 |
C2 |
C3 |
O3 |
HO3 |
180.0 |
299.4 |
N2 |
C2 |
C1 |
O1 |
292.3 |
301.3 |
N2 |
C2 |
C1 |
O5 |
168.3 |
181.1 |
N2 |
C2 |
C1 |
H1 |
44.0 |
61.1 |
C1 |
C2 |
N2 |
C3 |
240.5 |
240.2 |
C1 |
C2 |
N2 |
H2 |
120.4 |
120.1 |
C3 |
C2 |
N2 |
H2 |
239.9 |
239.9 |
N2 |
C2 |
C3 |
C4 |
179.7 |
186.5 |
N2 |
C2 |
C3 |
O3 |
57.8 |
66.5 |
N2 |
C2 |
C3 |
H3 |
298.2 |
306.1 |
HN21 |
N2 |
C2 |
HN22 |
125.2 |
246.1 |
H2 |
C2 |
C1 |
O1 |
50.6 |
61.4 |
H2 |
C2 |
C1 |
O5 |
286.6 |
301.2 |
H2 |
C2 |
C1 |
H1 |
162.3 |
181.2 |
C1 |
C2 |
H2 |
C3 |
118.7 |
119.7 |
C1 |
C2 |
H2 |
N2 |
239.5 |
239.8 |
C3 |
C2 |
H2 |
N2 |
120.8 |
120.2 |
H2 |
C2 |
C3 |
C4 |
61.4 |
66.4 |
H2 |
C2 |
C3 |
O3 |
299.6 |
306.4 |
H2 |
C2 |
C3 |
H3 |
180.0 |
186.0 |
H2 |
C2 |
N2 |
HN21 |
59.6 |
300.0 |
H2 |
C2 |
N2 |
HN22 |
294.4 |
53.8 |
C4 |
C3 |
C2 |
N2 |
179.7 |
186.5 |
C4 |
C3 |
C2 |
H2 |
61.4 |
66.4 |
C2 |
C3 |
C4 |
O3 |
238.4 |
239.8 |
C2 |
C3 |
C4 |
H3 |
118.8 |
119.6 |
O3 |
C3 |
C4 |
H3 |
240.4 |
239.8 |
C4 |
C3 |
O3 |
HO3 |
57.5 |
180.0 |
C5 |
C4 |
C3 |
O4 |
258.7 |
240.0 |
C5 |
C4 |
C3 |
H4 |
128.1 |
119.8 |
C3 |
C4 |
C5 |
C6 |
179.1 |
178.7 |
C3 |
C4 |
C5 |
O5 |
295.5 |
298.9 |
C3 |
C4 |
C5 |
H5 |
60.2 |
58.9 |
O4 |
C4 |
C3 |
H4 |
229.4 |
239.8 |
C3 |
C4 |
O4 |
HO4 |
180.0 |
180.4 |
O3 |
C3 |
C2 |
N2 |
57.8 |
66.5 |
O3 |
C3 |
C2 |
H2 |
299.6 |
306.4 |
C2 |
C3 |
O3 |
C4 |
122.5 |
119.4 |
C2 |
C3 |
O3 |
H3 |
241.1 |
239.6 |
C4 |
C3 |
O3 |
H3 |
118.6 |
120.3 |
O3 |
C3 |
C4 |
C5 |
192.2 |
173.7 |
O3 |
C3 |
C4 |
O4 |
293.5 |
293.7 |
O3 |
C3 |
C4 |
H4 |
64.1 |
53.9 |
H3 |
C3 |
C2 |
N2 |
298.2 |
306.1 |
H3 |
C3 |
C2 |
H2 |
180.0 |
186.0 |
C2 |
C3 |
H3 |
C4 |
239.5 |
240.9 |
C2 |
C3 |
H3 |
O3 |
119.7 |
120.6 |
C4 |
C3 |
H3 |
O3 |
240.2 |
239.7 |
H3 |
C3 |
C4 |
C5 |
311.8 |
293.9 |
H3 |
C3 |
C4 |
O4 |
53.1 |
53.9 |
H3 |
C3 |
C4 |
H4 |
183.7 |
174.1 |
H3 |
C3 |
O3 |
HO3 |
298.9 |
59.8 |
C1 |
O5 |
C5 |
C4 |
58.8 |
67.5 |
C5 |
C4 |
C3 |
O3 |
192.2 |
173.7 |
C5 |
C4 |
C3 |
H3 |
311.8 |
293.9 |
C3 |
C4 |
C5 |
O4 |
92.1 |
120.1 |
C3 |
C4 |
C5 |
H4 |
226.5 |
240.2 |
O4 |
C4 |
C5 |
H4 |
134.4 |
120.2 |
C5 |
C4 |
O4 |
HO4 |
285.4 |
300.1 |
C6 |
C5 |
C4 |
O5 |
243.6 |
239.9 |
C6 |
C5 |
C4 |
H5 |
119.0 |
119.8 |
C4 |
C5 |
C6 |
O6 |
179.6 |
180.3 |
C4 |
C5 |
C6 |
H61 |
304.9 |
300.4 |
C4 |
C5 |
C6 |
H62 |
54.3 |
60.3 |
O5 |
C5 |
C4 |
H5 |
235.4 |
239.9 |
O4 |
C4 |
C3 |
O3 |
293.5 |
293.7 |
O4 |
C4 |
C3 |
H3 |
53.1 |
53.9 |
C3 |
C4 |
O4 |
C5 |
254.6 |
240.3 |
C3 |
C4 |
O4 |
H4 |
128.1 |
120.1 |
C5 |
C4 |
O4 |
H4 |
233.4 |
239.9 |
O4 |
C4 |
C5 |
C6 |
87.1 |
58.7 |
O4 |
C4 |
C5 |
O5 |
203.5 |
178.8 |
O4 |
C4 |
C5 |
H5 |
328.1 |
298.9 |
H4 |
C4 |
C3 |
O3 |
64.1 |
53.9 |
H4 |
C4 |
C3 |
H3 |
183.7 |
174.1 |
C3 |
C4 |
H4 |
C5 |
125.1 |
119.6 |
C3 |
C4 |
H4 |
O4 |
247.0 |
239.7 |
C5 |
C4 |
H4 |
O4 |
121.9 |
120.2 |
H4 |
C4 |
C5 |
C6 |
312.6 |
298.5 |
H4 |
C4 |
C5 |
O5 |
69.0 |
58.6 |
H4 |
C4 |
C5 |
H5 |
193.7 |
178.7 |
H4 |
C4 |
O4 |
HO4 |
51.9 |
60.2 |
C1 |
O5 |
C5 |
C6 |
179.8 |
187.7 |
C6 |
C5 |
C4 |
O4 |
87.1 |
58.7 |
C6 |
C5 |
C4 |
H4 |
312.6 |
298.5 |
C4 |
C5 |
C6 |
O5 |
114.4 |
120.4 |
C4 |
C5 |
C6 |
H5 |
239.1 |
240.2 |
O5 |
C5 |
C6 |
H5 |
124.8 |
119.9 |
O6 |
C6 |
C5 |
H61 |
234.7 |
239.9 |
O6 |
C6 |
C5 |
H62 |
125.3 |
120.0 |
C5 |
C6 |
O6 |
HO6 |
180.0 |
180.0 |
H61 |
C6 |
C5 |
H62 |
250.6 |
240.1 |
C5 |
O5 |
C1 |
H1 |
57.0 |
52.5 |
O5 |
C5 |
C4 |
O4 |
203.5 |
178.8 |
O5 |
C5 |
C4 |
H4 |
69.0 |
58.6 |
C4 |
C5 |
O5 |
C6 |
239.0 |
239.9 |
C4 |
C5 |
O5 |
H5 |
120.4 |
120.1 |
C6 |
C5 |
O5 |
H5 |
241.3 |
240.2 |
O5 |
C5 |
C6 |
O6 |
65.2 |
59.9 |
O5 |
C5 |
C6 |
H61 |
190.5 |
180.0 |
O5 |
C5 |
C6 |
H62 |
300.0 |
299.9 |
H5 |
C5 |
C4 |
O4 |
328.1 |
298.9 |
H5 |
C5 |
C4 |
H4 |
193.7 |
178.7 |
C4 |
C5 |
H5 |
C6 |
123.6 |
119.8 |
C4 |
C5 |
H5 |
O5 |
242.8 |
239.7 |
C6 |
C5 |
H5 |
O5 |
119.2 |
119.9 |
H5 |
C5 |
C6 |
O6 |
300.5 |
300.1 |
H5 |
C5 |
C6 |
H61 |
65.8 |
60.2 |
H5 |
C5 |
C6 |
H62 |
175.2 |
180.1 |
O6 |
C6 |
C5 |
O5 |
65.2 |
59.9 |
O6 |
C6 |
C5 |
H5 |
300.5 |
300.1 |
C5 |
C6 |
O6 |
H61 |
125.3 |
120.1 |
C5 |
C6 |
O6 |
H62 |
234.7 |
240.0 |
H61 |
C6 |
O6 |
H62 |
109.5 |
119.9 |
H61 |
C6 |
C5 |
O5 |
190.5 |
180.0 |
H61 |
C6 |
C5 |
H5 |
65.8 |
60.2 |
C5 |
C6 |
H61 |
O6 |
234.0 |
239.8 |
C5 |
C6 |
H61 |
H62 |
117.0 |
119.9 |
O6 |
C6 |
H61 |
H62 |
243.0 |
240.0 |
H61 |
C6 |
O6 |
HO6 |
54.7 |
59.9 |
H62 |
C6 |
C5 |
O5 |
300.0 |
299.9 |
H62 |
C6 |
C5 |
H5 |
175.2 |
180.1 |
C5 |
C6 |
H62 |
O6 |
126.0 |
120.1 |
C5 |
C6 |
H62 |
H61 |
243.0 |
240.0 |
O6 |
C6 |
H62 |
H61 |
117.0 |
120.0 |
H62 |
C6 |
O6 |
HO6 |
305.2 |
300.0 |
HN21 |
N2 |
C2 |
H2 |
59.6 |
300.0 |
C2 |
N2 |
HN21 |
HN22 |
234.8 |
113.9 |
HN22 |
N2 |
C2 |
H2 |
294.4 |
53.8 |
C2 |
N2 |
HN22 |
HN21 |
124.6 |
246.2 |
HO1 |
O1 |
C1 |
O5 |
308.7 |
300.4 |
HO1 |
O1 |
C1 |
H1 |
74.8 |
60.2 |
HO3 |
O3 |
C3 |
H3 |
298.9 |
59.8 |
HO4 |
O4 |
C4 |
H4 |
51.9 |
60.2 |
HO6 |
O6 |
C6 |
H61 |
54.7 |
59.9 |
HO6 |
O6 |
C6 |
H62 |
305.2 |
300.0 |