PDB Chemical Component GCD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GCD

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.550	1.535
C1	O1	1.428	1.428
C1	O5	1.441	1.430
C1	H1	1.100	1.091
C2	C3	1.528	1.532
C2	O2	1.437	1.430
C2	H2	1.100	1.090
C3	C4	1.536	1.505
C3	O3	1.489	1.429
C3	H3	1.100	1.089
C4	C5	1.534	1.325
C5	C6	1.528	1.474
C5	O5	1.425	1.355
C6	O6A	1.350	1.215
C6	O6B	1.222	1.348
O1	HO1	0.950	0.967
O2	HO2	0.950	0.966
O3	HO3	0.951	0.967
C4	H4	1.080	1.080
O6B	HOB	0.950	0.967

Bond Angles for GCD

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O1	120.7	109.7
C2	C1	O5	109.5	108.3
C2	C1	H1	100.0	109.7
C1	C2	C3	105.6	108.3
C1	C2	O2	109.9	109.6
C1	C2	H2	109.3	109.7
O1	C1	O5	119.9	109.8
O1	C1	H1	100.9	109.7
C1	O1	HO1	109.5	114.0
O5	C1	H1	100.8	109.7
C1	O5	C5	113.0	117.6
C3	C2	O2	111.3	109.7
C3	C2	H2	109.6	109.7
C2	C3	C4	116.0	109.4
C2	C3	O3	103.4	109.4
C2	C3	H3	108.6	109.5
O2	C2	H2	110.9	109.8
C2	O2	HO2	109.5	114.0
C4	C3	O3	111.0	109.5
C4	C3	H3	108.5	109.5
C3	C4	C5	118.4	122.3
C3	C4	H4	120.8	118.8
O3	C3	H3	109.1	109.5
C3	O3	HO3	109.5	114.0
C4	C5	C6	125.2	118.4
C4	C5	O5	117.1	123.1
C5	C4	H4	120.8	118.9
C6	C5	O5	117.2	118.5
C5	C6	O6A	119.7	120.1
C5	C6	O6B	118.6	120.0
O6A	C6	O6B	121.3	120.0
C6	O6B	HOB	109.5	117.0

Torsion Angles for GCD

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1	C2	O5	145.5	119.8
O1	C1	C2	H1	250.8	239.4
C2	C1	O1	HO1	180.0	180.0
O5	C1	C2	H1	105.3	119.6
C2	C1	O5	C5	292.6	312.2
C3	C2	C1	O2	239.8	240.3
C3	C2	C1	H2	117.9	119.7
C1	C2	C3	C4	319.7	312.8
C1	C2	C3	O3	197.9	192.8
C1	C2	C3	H3	82.1	72.8
O2	C2	C1	H2	238.1	239.4
C1	C2	O2	HO2	180.0	60.0
C2	C1	O1	O5	218.0	241.1
C2	C1	O1	H1	108.7	120.6
O1	C1	C2	C3	214.1	182.7
O1	C1	C2	O2	334.3	302.4
O1	C1	C2	H2	96.3	63.0
O5	C1	O1	H1	250.7	239.4
O1	C1	O5	C5	146.8	192.5
C2	C1	O5	O1	145.8	119.8
C2	C1	O5	H1	255.2	240.4
O5	C1	C2	C3	68.7	62.9
O5	C1	C2	O2	188.8	182.6
O5	C1	C2	H2	310.8	303.2
O1	C1	O5	H1	109.4	120.6
O5	C1	O1	HO1	322.0	298.9
C4	C5	O5	C1	34.4	16.6
C6	C5	O5	C1	206.2	196.6
C2	C1	H1	O1	235.8	239.4
C2	C1	H1	O5	112.2	118.8
H1	C1	C2	C3	323.3	303.3
H1	C1	C2	O2	83.5	63.0
H1	C1	C2	H2	205.5	183.6
O1	C1	H1	O5	236.4	239.4
H1	C1	O1	HO1	71.3	59.5
H1	C1	O5	C5	37.4	71.9
C3	C2	C1	O1	214.1	182.7
C3	C2	C1	O5	68.7	62.9
C3	C2	C1	H1	323.3	303.3
C1	C2	C3	O2	119.2	119.6
C1	C2	C3	H2	242.3	240.3
O2	C2	C3	H2	123.1	120.7
C3	C2	O2	HO2	296.7	178.8
C4	C3	C2	O3	121.8	120.0
C4	C3	C2	H3	237.6	240.0
C2	C3	C4	C5	12.4	17.6
C2	C3	C4	H4	192.4	197.5
O3	C3	C2	H3	115.8	120.0
C2	C3	O3	HO3	180.0	180.0
O2	C2	C1	O1	334.3	302.4
O2	C2	C1	O5	188.8	182.6
O2	C2	C1	H1	83.5	63.0
C1	C2	O2	C3	243.3	241.2
C1	C2	O2	H2	121.0	120.6
C3	C2	O2	H2	237.6	239.3
O2	C2	C3	C4	200.5	193.2
O2	C2	C3	O3	78.7	73.2
O2	C2	C3	H3	322.9	313.2
H2	C2	C1	O1	96.3	63.0
H2	C2	C1	O5	310.8	303.2
H2	C2	C1	H1	205.5	183.6
C1	C2	H2	C3	115.3	118.8
C1	C2	H2	O2	238.7	239.5
C3	C2	H2	O2	123.3	120.7
H2	C2	C3	C4	77.4	72.5
H2	C2	C3	O3	315.6	312.5
H2	C2	C3	H3	199.8	192.5
H2	C2	O2	HO2	59.0	299.5
C4	C3	C2	O2	200.5	193.2
C4	C3	C2	H2	77.4	72.5
C2	C3	C4	O3	242.4	240.1
C2	C3	C4	H3	122.5	120.0
O3	C3	C4	H3	240.1	239.9
C4	C3	O3	HO3	55.0	60.0
C3	C4	C5	C6	181.8	179.6
C3	C4	C5	O5	352.8	359.7
C5	C4	C3	H4	180.0	180.0
O3	C3	C2	O2	78.7	73.2
O3	C3	C2	H2	315.6	312.5
C2	C3	O3	C4	125.0	120.0
C2	C3	O3	H3	244.6	240.0
C4	C3	O3	H3	119.6	120.0
O3	C3	C4	C5	130.0	137.5
O3	C3	C4	H4	310.0	317.5
H3	C3	C2	O2	322.9	313.2
H3	C3	C2	H2	199.8	192.5
C2	C3	H3	C4	233.1	240.0
C2	C3	H3	O3	112.0	120.0
C4	C3	H3	O3	238.9	240.0
H3	C3	C4	C5	249.9	257.6
H3	C3	C4	H4	69.9	77.5
H3	C3	O3	HO3	295.4	300.0
C1	O5	C5	C4	34.4	16.6
C5	C4	C3	O3	130.0	137.5
C5	C4	C3	H3	249.9	257.6
C3	C4	C5	H4	180.0	180.0
C6	C5	C4	O5	188.9	180.0
C4	C5	C6	O6A	311.8	360.0
C4	C5	C6	O6B	138.9	180.0
C1	O5	C5	C6	206.2	196.6
C4	C5	C6	O5	171.1	180.0
C6	C5	C4	H4	1.8	359.7
O6A	C6	C5	O6B	172.9	180.0
C5	C6	O6B	HOB	172.8	180.0
C5	O5	C1	H1	37.4	71.9
C4	C5	O5	C6	188.2	180.0
O5	C5	C4	H4	172.8	179.7
O5	C5	C6	O6A	140.8	180.0
O5	C5	C6	O6B	327.9	0.0
O6A	C6	C5	O5	140.8	180.0
C5	C6	O6A	O6B	187.3	180.0
O6A	C6	O6B	HOB	0.0	0.1
O6B	C6	C5	O5	327.9	0.0
C5	C6	O6B	O6A	172.8	180.0
HO1	O1	C1	O5	322.0	298.9
HO1	O1	C1	H1	71.3	59.5
HO2	O2	C2	H2	59.0	299.5
HO3	O3	C3	H3	295.4	300.0
H4	C4	C3	O3	310.0	317.5
H4	C4	C3	H3	69.9	77.5
C3	C4	H4	C5	180.0	180.0
H4	C4	C5	C6	1.8	359.7
H4	C4	C5	O5	172.8	179.7