PDB Chemical Component GBZ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GBZ

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
CBK CBI 1.393 1.382
CBK CBM 1.390 1.383
CBI CBH 1.398 1.382
CBM CBL 1.401 1.381
OBG CAX 1.245 1.208
OBO CBA 1.259 1.209
CAX OBF 1.249 1.343
CAX CAW 1.568 1.507
CBA OBN 1.260 1.342
CBA CAZ 1.535 1.506
CBH CBJ 1.399 1.389
CBL CBJ 1.392 1.389
CAZ CAY 1.532 1.531
CAY CAW 1.579 1.530
CBJ NAM 1.361 1.399
CAW NAV 1.464 1.465
CAO CAN 1.573 1.508
CAO CAP 1.563 1.530
OBE CAU 1.227 1.216
NAM CAN 1.379 1.348
NAM CAL 1.467 1.465
NAV CAU 1.348 1.347
OAK CAH 1.230 1.216
CAU N 1.364 1.347
CAN OBB 1.217 1.213
CAJ CAL 1.502 1.530
CAJ NAI 1.489 1.465
CAP CB 1.528 1.530
CB CA 1.520 1.531
N CA 1.492 1.465
CAH NAI 1.350 1.348
CAH CAE 1.387 1.477
CAD CAE 1.403 1.401
CAD CAC 1.391 1.382
CA C 1.550 1.507
CAE CAF 1.405 1.395
CAC CAA 1.395 1.387
C OXT 1.263 1.208
C O 1.256 1.342
CAF NAG 1.422 1.317
CAA NAG 1.364 1.322
CAA FAB 1.343 1.350
OBN H1 0.950 0.967
CAZ H2 1.101 1.090
CAZ H3 1.100 1.091
CAY H4 1.100 1.090
CAY H5 1.101 1.090
CAW H6 1.100 1.089
OBF H7 0.949 0.967
NAV H8 1.000 0.970
N H9 1.000 0.971
CA H10 1.100 1.090
O H11 0.950 0.967
CB H12 1.100 1.090
CB H13 1.100 1.090
CAP H14 1.100 1.090
CAP H15 1.099 1.090
CAO H16 1.100 1.090
CAO H17 1.100 1.090
CBH H18 1.080 1.079
CBI H19 1.080 1.080
CBK H20 1.080 1.080
CBM H21 1.080 1.080
CBL H22 1.080 1.081
CAL H23 1.100 1.090
CAL H24 1.100 1.090
CAJ H25 1.100 1.090
CAJ H26 1.100 1.090
NAI H27 1.000 0.970
CAD H28 1.080 1.080
CAC H29 1.080 1.080
CAF H30 1.080 1.080

Bond Angles for GBZ

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CBK CBI H19 120.2 120.0
CBK CBM CBL 120.3 120.0
CBM CBK H20 120.2 119.9
CBK CBM H21 119.8 120.0
CBI CBH H18 119.3 120.1
CBL CBM H21 119.9 119.9
CBM CBL H22 119.6 120.0
OBG CAX OBF 124.4 120.0
OBO CBA CAZ 119.5 120.0
CAX OBF H7 109.5 117.0
CAX CAW NAV 104.3 109.5
CAX CAW H6 109.4 109.5
CBA OBN H1 109.5 117.0
CBA CAZ CAY 111.3 109.5
CBA CAZ H2 109.0 109.5
CBA CAZ H3 109.0 109.5
CAZ CAY CAW 110.4 109.4
CAY CAZ H2 109.0 109.5
CAY CAZ H3 109.0 109.5
CAZ CAY H4 109.2 109.5
CAZ CAY H5 109.2 109.5
CAY CAW NAV 114.1 109.5
CAW CAY H4 109.2 109.5
CAW CAY H5 109.2 109.5
CAY CAW H6 109.2 109.5
CBJ NAM CAL 122.0 120.0
CAW NAV CAU 121.7 120.0
NAV CAW H6 110.8 109.5
CAW NAV H8 119.1 120.0
CAO CAN OBB 117.9 120.0
CAN CAO H16 109.4 109.5
CAN CAO H17 109.4 109.5
CAO CAP H14 110.2 109.5
CAO CAP H15 110.2 109.5
OBE CAU N 124.5 120.0
NAM CAL H23 109.0 109.5
NAM CAL H24 109.0 109.5
NAV CAU N 116.6 120.0
CAU NAV H8 119.1 120.0
OAK CAH CAE 116.4 120.0
CAU N CA 126.7 120.0
CAU N H9 116.6 120.0
CAJ CAL H23 109.0 109.5
CAJ CAL H24 109.0 109.4
NAI CAJ H25 108.5 109.5
NAI CAJ H26 108.5 109.5
CAJ NAI H27 121.0 120.0
CAP CB H12 108.8 109.5
CAP CB H13 108.8 109.5
CB CA H10 108.0 109.4
N CA C 112.1 109.5
CA N H9 116.7 119.9
N CA H10 108.3 109.5
CAH NAI H27 121.0 120.0
CAH CAE CAF 122.9 120.5
CAD CAE CAF 120.1 118.9
CAD CAC CAA 119.5 119.3
CAC CAD H28 119.9 120.8
CAD CAC H29 120.2 120.4
CA C OXT 118.1 119.9
CA C O 115.4 120.0
C CA H10 107.6 109.5
CAE CAF NAG 118.5 120.6
CAE CAF H30 120.8 119.7
CAC CAA NAG 121.2 121.0
CAC CAA FAB 117.1 119.5
CAA CAC H29 120.2 120.4
OXT C O 126.4 120.0
C O H11 109.5 116.9
FAB CAA NAG 121.8 119.5
H2 CAZ H3 109.5 109.5
H4 CAY H5 109.5 109.5
H12 CB H13 109.5 109.5
H14 CAP H15 109.5 109.5
H16 CAO H17 109.5 109.5
H23 CAL H24 109.5 109.5
H25 CAJ H26 109.5 109.5

Torsion Angles for GBZ

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
CBK CBI CBH H18 179.9 180.1
CBM CBK CBI H19 180.1 180.1
CBL CBM CBK H21 180.0 179.8
CBK CBM CBL H22 180.0 180.0
CBL CBM CBK H20 179.9 179.7
CBK CBM CBL H21 180.0 180.2
OBG CAX OBF H7 360.0 0.0
OBG CAX CAW NAV 152.3 360.0
OBG CAX CAW H6 33.7 240.0
OBO CBA OBN H1 360.0 360.0
OBO CBA CAZ CAY 335.7 360.0
OBO CBA CAZ H2 95.9 120.0
OBO CBA CAZ H3 215.4 240.0
OBF CAX CAW NAV 330.5 180.0
OBF CAX CAW H6 211.9 60.0
CAY CAW CAX NAV 122.1 120.0
CAX CAW CAY H4 173.9 55.0
CAX CAW CAY H5 54.2 295.0
CAY CAW CAX H6 240.7 240.0
CAX CAW NAV CAU 304.5 275.0
NAV CAW CAX H6 118.6 120.0
CAX CAW NAV H8 124.6 94.9
CAZ CBA OBN H1 178.7 180.0
CBA CAZ CAY CAW 168.1 180.0
CAY CAZ CBA H2 239.7 240.0
CAY CAZ CBA H3 120.3 120.0
CBA CAZ CAY H4 288.3 300.0
CBA CAZ CAY H5 48.0 60.1
H2 CAZ CBA H3 240.6 240.0
CBH CBJ NAM CAL 97.7 292.8
CBL CBJ NAM CAL 276.8 112.5
CBA CAZ CAY H2 120.3 120.0
CBA CAZ CAY H3 239.7 240.0
CAZ CAY CAW NAV 50.1 295.0
CAW CAY CAZ H4 239.9 240.0
CAW CAY CAZ H5 120.2 120.0
CAZ CAY CAW H6 174.7 55.0
H2 CAZ CAY H3 119.5 120.0
H4 CAY CAZ H5 240.3 239.9
CAX CAW CAY NAV 244.0 240.0
CAX CAW CAY H6 119.3 120.0
CAW CAY CAZ H2 47.9 60.0
CAW CAY CAZ H3 288.4 300.0
CAZ CAY CAW H4 120.2 120.0
CAZ CAY CAW H5 239.8 240.0
CAY CAW NAV CAU 185.9 155.1
NAV CAW CAY H6 235.4 240.0
CAY CAW NAV H8 5.9 335.0
H4 CAY CAW H5 119.7 120.0
CBJ NAM CAL H23 189.0 30.0
CBJ NAM CAL H24 308.4 150.0
CAX CAW NAV H6 242.4 240.0
NAV CAW CAY H4 289.9 175.0
NAV CAW CAY H5 170.2 55.0
CAY CAW NAV H6 123.8 120.1
CAW NAV CAU N 165.1 180.0
CAU NAV CAW H8 180.0 180.1
CAN CAO CAP H14 37.2 60.0
CAN CAO CAP H15 158.1 300.0
H16 CAO CAN H17 240.1 120.0
CAO CAP CB H12 309.1 60.1
CAO CAP CB H13 68.3 300.0
H14 CAP CAO H15 239.2 120.0
NAV CAU OBE N 179.5 180.0
OBE CAU NAV H8 165.5 180.1
OBE CAU N CA 351.4 0.0
OBE CAU N H9 171.4 180.0
NAM CAN CAO H16 302.9 65.3
NAM CAN CAO H17 62.8 305.3
CAJ CAL NAM H23 239.7 240.0
CAJ CAL NAM H24 120.3 120.0
H23 CAL NAM H24 240.6 240.0
CAU NAV CAW H6 62.1 35.0
CAW NAV CAU H8 180.0 179.9
OBE CAU NAV N 180.5 180.0
NAV CAU N CA 171.9 180.0
NAV CAU N H9 351.9 359.9
OAK CAH NAI H27 183.6 180.0
OAK CAH CAE CAF 227.0 180.0
N CAU NAV H8 345.1 0.1
CAU N CA C 210.0 275.0
CA N CAU H9 180.0 180.0
CAU N CA H10 328.5 35.0
OBB CAN CAO H16 125.8 245.3
OBB CAN CAO H17 245.7 125.3
NAM CAL CAJ H23 120.3 120.0
NAM CAL CAJ H24 239.7 240.0
H23 CAL CAJ H24 119.4 120.0
NAI CAJ CAL H23 320.4 60.0
NAI CAJ CAL H24 201.0 300.0
CAH NAI CAJ H27 180.0 180.0
H25 CAJ NAI H26 118.9 120.0
CAP CB CA H10 181.8 55.0
H12 CB CAP H13 240.8 120.0
CB CA N H9 268.9 335.0
N CA CB H10 239.4 240.0
C CA CB H10 115.2 119.9
CAU N CA H9 180.0 180.0
CB CA N H10 120.4 120.0
N CA C OXT 326.7 359.9
N CA C O 150.6 180.0
C CA N H10 241.4 240.0
CAH NAI CAJ H25 113.1 60.0
CAH NAI CAJ H26 354.2 300.0
CAJ NAI CAH H27 180.0 180.0
CAE CAH NAI H27 5.8 360.0
CAD CAE CAH CAF 174.6 180.2
CAH CAE CAF NAG 177.3 179.7
CAH CAE CAF H30 357.3 360.0
CAH CAE CAD CAF 185.2 179.8
CAD CAE CAF NAG 2.8 359.5
CAD CAE CAF H30 182.8 179.7
CAC CAD CAE CAF 357.2 0.2
CAD CAC CAA NAG 360.0 0.1
CAD CAC CAA FAB 180.1 180.0
CAA CAC CAD H29 180.0 179.9
CB CA C H10 244.6 240.1
C CA N H9 29.9 95.0
N CA C H10 119.0 120.0
OXT C CA O 176.1 179.9
CA C O H11 175.7 180.0
CAA CAC CAD H28 181.4 180.0
CAD CAC CAA H29 180.0 180.1
FAB CAA CAC NAG 180.1 179.9
CA C OXT O 184.4 180.1
OXT C CA H10 207.7 239.9
OXT C O H11 0.0 0.0
CA C O OXT 175.7 179.9
O C CA H10 31.6 60.0
CAE CAF NAG H30 180.0 180.2
CAE CAF NAG CAA 358.5 0.6
CAC CAA NAG FAB 180.1 179.9
NAG CAA CAC H29 180.0 180.0
CAC CAA FAB NAG 179.9 180.1
FAB CAA CAC H29 0.1 360.0
CBA CAZ H2 CAY 238.3 240.0
CBA CAZ H2 H3 119.2 120.0
H2 CAZ CAY CAW 47.9 60.0
CAY CAZ H2 H3 240.8 240.0
H2 CAZ CAY H4 168.0 180.0
H2 CAZ CAY H5 287.7 300.1
CBA CAZ H3 CAY 121.7 120.0
CBA CAZ H3 H2 240.8 240.0
H3 CAZ CAY CAW 288.4 300.0
CAY CAZ H3 H2 119.2 120.0
H3 CAZ CAY H4 48.6 60.0
H3 CAZ CAY H5 168.3 180.1
CAZ CAY H4 CAW 239.1 240.0
H4 CAY CAZ H2 168.0 180.0
H4 CAY CAZ H3 48.6 60.0
CAZ CAY H4 H5 119.6 120.1
H4 CAY CAW NAV 289.9 175.0
CAW CAY H4 H5 240.4 240.0
H4 CAY CAW H6 54.5 295.1
CAZ CAY H5 CAW 120.9 120.0
H5 CAY CAZ H2 287.7 300.1
H5 CAY CAZ H3 168.3 180.1
CAZ CAY H5 H4 240.4 240.0
H5 CAY CAW NAV 170.2 55.0
CAW CAY H5 H4 119.5 120.0
H5 CAY CAW H6 294.8 175.0
CAX CAW H6 NAV 114.5 120.0
CAY CAW H6 NAV 233.5 240.0
H6 CAW CAY H4 54.5 295.1
H6 CAW CAY H5 294.8 175.0
H6 CAW NAV CAU 62.1 35.0
H6 CAW NAV H8 242.2 214.9
CAW NAV H8 CAU 180.0 180.1
H8 NAV CAW H6 242.2 214.9
H8 NAV CAU N 345.1 0.1
CAU N H9 CA 180.0 180.0
H9 N CA C 29.9 95.0
H9 N CA H10 148.5 215.0
N CA H10 C 238.6 240.0
H10 CA N H9 148.5 215.0
H10 CA C OXT 207.7 239.9
H10 CA C O 31.6 60.0
CAP CB H12 H13 118.7 239.9
H12 CB CA H10 61.4 175.0
CAP CB H13 H12 241.2 120.0
H13 CB CA H10 302.2 295.0
CAO CAP H14 H15 121.3 239.9
H14 CAP CB H12 189.5 180.0
H14 CAP CB H13 308.7 60.0
CAO CAP H15 H14 238.7 120.0
H15 CAP CB H12 68.7 300.0
H15 CAP CB H13 187.9 180.0
H16 CAO CAN OBB 125.8 245.3
CAN CAO H16 H17 119.9 240.0
H16 CAO CAP H14 277.2 180.0
H16 CAO CAP H15 38.1 60.0
H17 CAO CAN OBB 245.7 125.3
CAN CAO H17 H16 240.2 120.0
H17 CAO CAP H14 157.3 300.0
H17 CAO CAP H15 278.1 180.0
H19 CBI CBH H18 359.8 0.0
H20 CBK CBI H19 0.1 0.0
H20 CBK CBM CBL 179.9 179.7
H20 CBK CBM H21 360.0 360.0
CBK CBM H21 CBL 180.0 179.8
H21 CBM CBK H20 360.0 360.0
H21 CBM CBL H22 360.0 359.8
H22 CBL CBM H21 360.0 359.8
NAM CAL H23 H24 119.1 120.0
CAJ CAL H23 H24 240.9 240.0
NAM CAL H24 H23 240.9 240.0
CAJ CAL H24 H23 119.1 120.0
H25 CAJ CAL H23 80.9 180.0
H25 CAJ CAL H24 321.5 60.0
NAI CAJ H25 H26 241.7 240.0
H25 CAJ NAI H27 293.1 240.0
H26 CAJ CAL H23 199.9 300.0
H26 CAJ CAL H24 80.5 180.0
NAI CAJ H26 H25 118.3 120.0
H26 CAJ NAI H27 174.2 120.0
H27 NAI CAJ H25 293.1 240.0
H27 NAI CAJ H26 174.2 120.0
H28 CAD CAE CAF 177.2 180.2
H28 CAD CAC CAA 181.4 180.0
H28 CAD CAC H29 1.4 0.1
CAD CAC H29 CAA 180.0 179.9
H29 CAC CAD H28 1.4 0.1
H29 CAC CAA NAG 180.0 180.0
H29 CAC CAA FAB 0.1 360.0
CAE CAF H30 NAG 180.0 179.8