PDB Chemical Component GBP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GBP

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C OT1 1.259 1.342
C OT2 1.256 1.208
C CA 1.558 1.507
OT1 HOT1 0.950 0.966
N CA 1.484 1.469
N H11N 1.020 1.008
N H12N 1.019 1.010
CA CB 1.553 1.529
CA HA1 1.116 1.090
CB CG 1.556 1.530
CB HB1 1.115 1.090
CB HB2 1.115 1.090
CB2 SG2 1.838 1.814
CB2 CA2 1.548 1.530
CB2 HB21 1.115 1.089
CB2 HB22 1.114 1.090
SG2 CD2 1.805 1.813
CG CD 1.536 1.506
CG HG1 1.115 1.089
CG HG2 1.115 1.090
CD OE 1.237 1.213
CD N2 1.336 1.348
N2 CA2 1.480 1.464
N2 HN21 1.020 0.970
CA2 C2 1.578 1.508
CA2 HA2 1.116 1.090
C2 O2 1.236 1.213
C2 N3 1.341 1.346
N3 CA3 1.477 1.466
N3 HN3 1.019 0.970
CA3 C3 1.527 1.507
CA3 HA31 1.116 1.089
CA3 HA32 1.115 1.090
C3 O31 1.250 1.208
C3 O32 1.243 1.342
O32 HO31 0.949 0.968
NE2 OF2 1.327 1.416
NE2 CD2 1.344 1.466
NE2 CG2 1.463 1.397
OF2 HOF2 0.950 0.967
CD2 OZ1 1.228 1.429
CD2 HD2 1.115 1.090
OZ1 HOZ1 0.951 0.966
CG2 CL1 1.403 1.388
CG2 CL2 1.403 1.388
CL1 CM1 1.393 1.381
CL1 HL1 1.102 1.080
CL2 CM2 1.390 1.381
CL2 HL2 1.103 1.080
CM1 CZ 1.392 1.383
CM1 HM1 1.103 1.080
CM2 CZ 1.388 1.382
CM2 HM2 1.103 1.080
CZ BR 1.882 1.891

Bond Angles for GBP

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OT1 C OT2 121.8 119.9
OT1 C CA 121.2 120.0
C OT1 HOT1 121.7 120.1
OT2 C CA 117.1 120.0
C CA N 111.3 109.5
C CA CB 115.5 109.5
C CA HA1 103.2 109.5
CA N H11N 111.3 106.7
CA N H12N 111.6 106.7
N CA CB 107.4 109.4
N CA HA1 111.9 109.5
H11N N H12N 111.5 106.7
CB CA HA1 107.5 109.5
CA CB CG 118.4 109.5
CA CB HB1 109.0 109.5
CA CB HB2 109.0 109.4
CG CB HB1 109.0 109.5
CG CB HB2 109.0 109.4
CB CG CD 118.3 109.5
CB CG HG1 109.1 109.5
CB CG HG2 109.0 109.4
HB1 CB HB2 101.1 109.4
SG2 CB2 CA2 109.8 109.4
SG2 CB2 HB21 112.0 109.5
SG2 CB2 HB22 112.1 109.4
CB2 SG2 CD2 109.3 100.0
CA2 CB2 HB21 112.1 109.5
CA2 CB2 HB22 112.1 109.5
CB2 CA2 N2 108.3 109.5
CB2 CA2 C2 108.6 109.4
CB2 CA2 HA2 112.4 109.4
HB21 CB2 HB22 98.3 109.5
SG2 CD2 NE2 123.8 109.5
SG2 CD2 OZ1 112.5 109.5
SG2 CD2 HD2 115.2 109.5
CD CG HG1 109.0 109.6
CD CG HG2 109.0 109.4
CG CD OE 119.2 120.0
CG CD N2 117.1 120.0
HG1 CG HG2 101.1 109.4
OE CD N2 123.7 120.0
CD N2 CA2 124.1 120.0
CD N2 HN21 112.5 120.0
CA2 N2 HN21 123.5 120.0
N2 CA2 C2 114.0 109.5
N2 CA2 HA2 107.0 109.5
C2 CA2 HA2 106.6 109.4
CA2 C2 O2 119.3 120.0
CA2 C2 N3 115.5 120.0
O2 C2 N3 124.9 120.0
C2 N3 CA3 124.0 120.0
C2 N3 HN3 112.8 120.0
CA3 N3 HN3 123.2 120.0
N3 CA3 C3 115.8 109.5
N3 CA3 HA31 109.9 109.5
N3 CA3 HA32 109.9 109.4
C3 CA3 HA31 109.9 109.5
C3 CA3 HA32 110.0 109.5
CA3 C3 O31 118.3 120.0
CA3 C3 O32 118.6 120.0
HA31 CA3 HA32 100.3 109.5
O31 C3 O32 123.2 120.0
C3 O32 HO31 118.6 120.0
OF2 NE2 CD2 113.4 120.0
OF2 NE2 CG2 117.3 120.0
NE2 OF2 HOF2 113.3 106.8
CD2 NE2 CG2 129.3 120.0
NE2 CD2 OZ1 123.4 109.4
NE2 CD2 HD2 41.9 109.4
NE2 CG2 CL1 121.8 120.1
NE2 CG2 CL2 118.4 120.1
OZ1 CD2 HD2 117.6 109.5
CD2 OZ1 HOZ1 112.6 106.8
CL1 CG2 CL2 119.8 119.9
CG2 CL1 CM1 120.9 120.0
CG2 CL1 HL1 119.9 120.0
CG2 CL2 CM2 119.2 119.9
CG2 CL2 HL2 120.9 120.0
CM1 CL1 HL1 119.1 120.0
CL1 CM1 CZ 118.2 120.0
CL1 CM1 HM1 121.0 120.0
CM2 CL2 HL2 119.9 120.0
CL2 CM2 CZ 120.1 120.1
CL2 CM2 HM2 120.0 119.9
CZ CM1 HM1 120.9 120.0
CM1 CZ CM2 121.7 120.2
CM1 CZ BR 118.6 119.9
CZ CM2 HM2 119.9 120.0
CM2 CZ BR 119.6 119.9

Torsion Angles for GBP

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OT2 C OT1 CA 180.2 180.0
OT1 C CA N 251.7 150.0
OT1 C CA CB 14.5 269.9
OT1 C CA HA1 131.5 30.0
OT1 C OT2 CA 179.8 180.0
OT2 C OT1 HOT1 180.0 359.9
OT2 C CA N 71.6 330.0
OT2 C CA CB 194.3 89.9
OT2 C CA HA1 311.3 210.0
OT1 C CA OT2 180.2 180.0
CA C OT1 HOT1 359.8 179.9
C CA N H11N 180.0 60.0
C CA N H12N 54.7 173.8
N CA C CB 237.2 240.0
N CA C HA1 120.3 120.0
CB CA C HA1 243.0 239.9
C CA CB CG 60.5 179.9
C CA CB HB1 185.7 300.0
C CA CB HB2 295.2 60.0
HOT1 OT1 C OT2 180.0 359.9
HOT1 OT1 C CA 359.8 179.9
C CA N CB 127.3 120.0
C CA N HA1 245.0 240.0
H11N N CA H12N 125.3 246.2
CB CA N HA1 117.7 120.0
N CA CB CG 185.3 299.9
N CA CB HB1 310.6 60.0
N CA CB HB2 60.0 180.0
CA N H11N H12N 234.7 113.8
H11N N CA CB 52.8 300.0
H11N N CA HA1 295.0 180.0
CA N H12N H11N 125.2 246.2
H12N N CA CB 287.4 53.8
H12N N CA HA1 169.7 293.8
C CA CB N 235.2 240.0
C CA CB HA1 114.6 120.0
CB CA N H11N 52.8 300.0
CB CA N H12N 287.4 53.8
N CA CB HA1 239.4 240.0
CG CB CA HB1 234.8 239.9
CG CB CA HB2 125.3 119.9
CA CB CG CD 90.8 180.0
CA CB CG HG1 216.0 300.1
CA CB CG HG2 325.6 60.0
HB1 CB CA HB2 250.5 240.0
C CA HA1 N 119.9 120.0
C CA HA1 CB 237.5 239.9
HA1 CA N H11N 295.0 180.0
HA1 CA N H12N 169.7 293.8
N CA HA1 CB 117.7 120.0
HA1 CA CB CG 305.9 59.9
HA1 CA CB HB1 71.2 180.0
HA1 CA CB HB2 180.6 300.0
CG CB CA HA1 305.9 59.9
CA CB CG HB1 125.2 120.1
CA CB CG HB2 234.7 240.0
HB1 CB CG HB2 109.5 120.0
CD CG CB HG1 234.8 239.8
CD CG CB HG2 125.2 120.0
CB CG CD OE 254.3 0.1
CB CG CD N2 74.3 180.1
HG1 CG CB HG2 250.4 240.1
HB1 CB CA HA1 71.2 180.0
CA CB HB1 CG 229.4 239.9
CA CB HB1 HB2 114.7 120.0
CG CB HB1 HB2 245.3 240.1
HB1 CB CG CD 325.5 59.9
HB1 CB CG HG1 90.7 180.1
HB1 CB CG HG2 200.3 300.0
HB2 CB CA HA1 180.6 300.0
CA CB HB2 CG 130.6 120.0
CA CB HB2 HB1 245.3 240.0
CG CB HB2 HB1 114.7 120.0
HB2 CB CG CD 216.0 300.0
HB2 CB CG HG1 341.3 60.1
HB2 CB CG HG2 90.9 180.0
CA2 CB2 SG2 HB21 234.8 120.0
CA2 CB2 SG2 HB22 125.3 240.0
SG2 CB2 CA2 N2 297.8 300.0
SG2 CB2 CA2 C2 173.6 180.0
SG2 CB2 CA2 HA2 55.8 60.1
HB21 CB2 SG2 HB22 250.5 120.0
CB2 SG2 CD2 NE2 174.2 303.5
CB2 SG2 CD2 OZ1 348.2 63.5
CB2 SG2 CD2 HD2 126.7 183.5
SG2 CB2 CA2 HB21 125.2 240.0
SG2 CB2 CA2 HB22 234.7 120.0
CA2 CB2 SG2 CD2 290.3 179.6
HB21 CB2 CA2 HB22 109.5 239.9
CD N2 CA2 CB2 154.7 150.0
CB2 CA2 N2 HN21 334.8 330.1
N2 CA2 CB2 C2 124.2 120.0
N2 CA2 CB2 HA2 242.0 239.9
C2 CA2 CB2 HA2 117.7 119.9
CB2 CA2 C2 O2 294.7 270.0
CB2 CA2 C2 N3 108.1 90.0
SG2 CB2 HB21 CA2 236.0 120.0
SG2 CB2 HB21 HB22 118.0 240.0
HB21 CB2 SG2 CD2 55.5 59.7
CA2 CB2 HB21 HB22 241.9 120.1
HB21 CB2 CA2 N2 172.6 60.0
HB21 CB2 CA2 C2 48.3 300.0
HB21 CB2 CA2 HA2 290.6 180.1
SG2 CB2 HB22 CA2 124.0 240.1
SG2 CB2 HB22 HB21 242.0 120.0
HB22 CB2 SG2 CD2 165.0 299.6
CA2 CB2 HB22 HB21 118.0 240.0
HB22 CB2 CA2 N2 63.1 180.0
HB22 CB2 CA2 C2 298.8 60.0
HB22 CB2 CA2 HA2 181.1 300.1
CD2 SG2 CB2 CA2 290.3 179.6
CD2 SG2 CB2 HB21 55.5 59.7
CD2 SG2 CB2 HB22 165.0 299.6
OF2 NE2 CD2 SG2 354.0 68.8
SG2 CD2 NE2 CG2 175.6 248.8
NE2 CD2 SG2 OZ1 185.9 240.0
NE2 CD2 SG2 HD2 47.5 120.0
OZ1 CD2 SG2 HD2 221.6 240.0
SG2 CD2 OZ1 HOZ1 180.0 307.8
CD CG CB HB1 325.5 59.9
CD CG CB HB2 216.0 300.0
CB CG CD HG1 125.2 120.1
CB CG CD HG2 234.8 240.1
HG1 CG CD HG2 109.5 120.0
OE CD CG N2 180.0 180.0
CG CD N2 CA2 182.4 180.1
CG CD N2 HN21 2.3 359.9
HG1 CG CB HB1 90.7 180.1
HG1 CG CB HB2 341.3 60.1
CB CG HG1 CD 229.5 239.9
CB CG HG1 HG2 114.8 119.9
CD CG HG1 HG2 245.3 240.0
HG1 CG CD OE 129.1 240.0
HG1 CG CD N2 309.1 59.9
HG2 CG CB HB1 200.3 300.0
HG2 CG CB HB2 90.9 180.0
CB CG HG2 CD 130.5 120.0
CB CG HG2 HG1 245.2 240.0
CD CG HG2 HG1 114.7 120.1
HG2 CG CD OE 19.6 120.0
HG2 CG CD N2 199.6 300.0
OE CD CG HG1 129.1 240.0
OE CD CG HG2 19.6 120.0
CG CD OE N2 180.0 180.0
OE CD N2 CA2 2.4 0.1
OE CD N2 HN21 182.3 179.9
CB2 CA2 N2 CD 154.7 150.0
N2 CD CG HG1 309.1 59.9
N2 CD CG HG2 199.6 300.0
CG CD N2 OE 180.0 180.0
CA2 N2 CD HN21 180.1 180.1
CD N2 CA2 C2 275.7 270.0
CD N2 CA2 HA2 33.3 30.0
N2 CA2 CB2 HB21 172.6 60.0
N2 CA2 CB2 HB22 63.1 180.0
CB2 CA2 N2 C2 239.0 240.0
CB2 CA2 N2 HA2 121.4 120.0
CD N2 CA2 HN21 179.9 179.9
C2 CA2 N2 HA2 242.4 240.0
N2 CA2 C2 O2 173.9 150.0
N2 CA2 C2 N3 347.3 330.0
CD N2 HN21 CA2 180.1 180.1
HN21 N2 CA2 C2 95.8 90.1
HN21 N2 CA2 HA2 213.4 210.1
C2 CA2 CB2 HB21 48.3 300.0
C2 CA2 CB2 HB22 298.8 60.0
CB2 CA2 C2 N2 120.8 120.0
CB2 CA2 C2 HA2 238.6 240.1
C2 CA2 N2 HN21 95.8 90.1
N2 CA2 C2 HA2 117.8 120.0
O2 C2 CA2 N3 186.6 180.0
CA2 C2 N3 CA3 188.7 180.0
CA2 C2 N3 HN3 8.7 0.0
HA2 CA2 CB2 HB21 290.6 180.1
HA2 CA2 CB2 HB22 181.1 300.1
CB2 CA2 HA2 N2 241.2 239.9
CB2 CA2 HA2 C2 118.9 119.9
HA2 CA2 N2 HN21 213.4 210.1
N2 CA2 HA2 C2 237.7 240.0
HA2 CA2 C2 O2 56.0 30.0
HA2 CA2 C2 N3 229.5 210.0
O2 C2 CA2 HA2 56.0 30.0
CA2 C2 O2 N3 172.8 180.0
O2 C2 N3 CA3 1.7 360.0
O2 C2 N3 HN3 181.7 180.0
N3 C2 CA2 HA2 229.5 210.0
CA2 C2 N3 O2 187.0 180.0
CA3 N3 C2 HN3 180.0 180.0
C2 N3 CA3 C3 233.7 180.0
C2 N3 CA3 HA31 358.9 300.0
C2 N3 CA3 HA32 108.3 60.0
C2 N3 CA3 HN3 180.0 180.0
C3 CA3 N3 HA31 234.7 240.0
C3 CA3 N3 HA32 125.3 120.0
N3 CA3 C3 O31 2.1 360.0
N3 CA3 C3 O32 181.5 180.0
HA31 CA3 N3 HA32 250.6 240.0
C2 N3 HN3 CA3 180.0 180.0
HN3 N3 CA3 C3 53.7 359.9
HN3 N3 CA3 HA31 178.9 119.9
HN3 N3 CA3 HA32 288.3 240.0
C3 CA3 N3 HN3 53.7 359.9
N3 CA3 C3 HA31 125.2 120.0
N3 CA3 C3 HA32 234.7 240.0
HA31 CA3 C3 HA32 109.5 120.1
O31 C3 CA3 O32 180.6 180.0
CA3 C3 O32 HO31 180.0 180.0
HA31 CA3 N3 HN3 178.9 119.9
N3 CA3 HA31 C3 231.4 240.0
N3 CA3 HA31 HA32 115.7 120.0
C3 CA3 HA31 HA32 244.2 240.0
HA31 CA3 C3 O31 236.9 240.0
HA31 CA3 C3 O32 56.3 60.0
HA32 CA3 N3 HN3 288.3 240.0
N3 CA3 HA32 C3 128.6 120.0
N3 CA3 HA32 HA31 244.3 240.0
C3 CA3 HA32 HA31 115.7 120.1
HA32 CA3 C3 O31 127.4 120.0
HA32 CA3 C3 O32 306.8 300.0
O31 C3 CA3 HA31 236.9 240.0
O31 C3 CA3 HA32 127.4 120.0
CA3 C3 O31 O32 179.4 180.0
O31 C3 O32 HO31 359.4 360.0
O32 C3 CA3 HA31 56.3 60.0
O32 C3 CA3 HA32 306.8 300.0
CA3 C3 O32 O31 180.6 180.0
SG2 CD2 NE2 OF2 354.0 68.8
CD2 NE2 OF2 CG2 181.4 180.0
OF2 NE2 CD2 OZ1 180.6 308.7
OF2 NE2 CD2 HD2 85.2 188.8
OF2 NE2 CG2 CL1 216.2 7.7
OF2 NE2 CG2 CL2 35.6 187.3
SG2 CD2 NE2 OZ1 173.4 120.1
SG2 CD2 NE2 HD2 268.8 240.0
OF2 NE2 CD2 CG2 178.4 180.0
CD2 NE2 OF2 HOF2 180.0 5.7
CD2 NE2 CG2 CL1 34.6 187.7
CD2 NE2 CG2 CL2 214.0 7.3
OZ1 CD2 NE2 HD2 95.4 120.0
NE2 CD2 OZ1 HOZ1 354.1 67.9
OF2 NE2 CG2 CD2 181.7 180.0
CG2 NE2 OF2 HOF2 358.6 185.7
CG2 NE2 CD2 OZ1 2.2 128.7
CG2 NE2 CD2 HD2 266.8 8.8
CL1 CG2 NE2 CL2 180.6 180.3
NE2 CG2 CL1 CM1 179.1 180.0
NE2 CG2 CL1 HL1 359.1 359.9
NE2 CG2 CL2 CM2 181.0 179.7
NE2 CG2 CL2 HL2 1.0 0.2
HOF2 OF2 NE2 CD2 180.0 5.7
HOF2 OF2 NE2 CG2 358.6 185.7
SG2 CD2 OZ1 NE2 185.9 240.0
SG2 CD2 OZ1 HD2 137.4 120.0
OZ1 CD2 NE2 CG2 2.2 128.7
NE2 CD2 OZ1 HD2 311.5 240.1
SG2 CD2 HD2 NE2 113.3 120.0
SG2 CD2 HD2 OZ1 223.7 239.9
HD2 CD2 NE2 CG2 266.8 8.8
NE2 CD2 HD2 OZ1 110.4 120.0
HD2 CD2 OZ1 HOZ1 42.6 187.8
HOZ1 OZ1 CD2 HD2 42.6 187.8
NE2 CG2 CL1 CL2 179.4 179.7
CL1 CG2 CL2 CM2 0.4 359.4
CL1 CG2 CL2 HL2 180.4 179.9
CM1 CL1 CG2 HL1 180.0 180.1
CG2 CL1 CM1 CZ 0.4 359.9
CG2 CL1 CM1 HM1 180.3 179.9
NE2 CG2 CL2 CL1 180.6 180.3
CL2 CG2 CL1 CM1 359.7 0.4
CL2 CG2 CL1 HL1 179.7 180.2
CM2 CL2 CG2 HL2 180.0 179.5
CG2 CL2 CM2 CZ 359.3 0.6
CG2 CL2 CM2 HM2 179.3 180.3
CM1 CL1 CG2 CL2 359.7 0.4
CG2 CL1 CM1 HL1 180.0 179.9
CZ CM1 CL1 HM1 180.0 180.0
CL1 CM1 CZ CM2 359.4 0.1
CL1 CM1 CZ BR 179.7 180.0
HL1 CL1 CG2 CL2 179.7 180.2
CG2 CL1 HL1 CM1 180.0 180.1
HL1 CL1 CM1 CZ 180.4 180.0
HL1 CL1 CM1 HM1 0.4 0.0
CG2 CL2 CM2 HL2 180.0 180.5
CM1 CZ CM2 CL2 0.8 359.7
CZ CM2 CL2 HM2 180.0 180.3
CL2 CM2 CZ BR 180.5 179.7
CG2 CL2 HL2 CM2 180.0 179.5
HL2 CL2 CM2 CZ 179.3 180.0
HL2 CL2 CM2 HM2 359.3 359.8
CZ CM1 CL1 HL1 180.4 180.0
CL1 CM1 CZ HM1 180.0 180.0
CL2 CM2 CZ CM1 0.8 359.7
CM1 CZ CM2 HM2 180.8 180.0
CM2 CZ CM1 BR 179.7 180.0
HM1 CM1 CL1 HL1 0.4 0.0
CL1 CM1 HM1 CZ 180.0 180.0
HM1 CM1 CZ CM2 179.4 180.1
HM1 CM1 CZ BR 359.7 0.0
CZ CM2 CL2 HL2 179.3 180.0
CL2 CM2 CZ HM2 180.0 179.7
CM2 CZ CM1 HM1 179.4 180.1
CM1 CZ CM2 BR 180.3 180.0
HM2 CM2 CL2 HL2 359.3 359.8
CL2 CM2 HM2 CZ 180.0 180.3
HM2 CM2 CZ BR 0.5 0.0
BR CZ CM1 HM1 359.7 0.0
CM1 CZ BR CM2 179.7 180.0
BR CZ CM2 HM2 0.5 0.0