PDB Chemical Component GBO

Ideal Model

Chemical Description

Name (2E,6E)-3,7-dimethyl-8-({5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}amino)octa-2,6-dien-1-yl trihydrogen diphosphate
Synonyms Biotin-GPP
Formula C20 H35 N3 O9 P2 S
Formal charge 0
Molecular weight 555.519 g/mol
Component type NON-POLYMER

Chemical features

Atom count 70
Chiral atom count 4
Chiral atoms P2 C16 C18 C19
Bond count 71
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) (2E,6E)-3,7-dimethyl-8-({5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}amino)octa-2,6-dien-1-yl trihydrogen diphosphate
Systematic name (OpenEye OEToolkits) [(2E,6E)-8-[5-[(3aR,6S,6aS)-2-oxo-1,3,3a,4,6,6a-hexahydrothieno[3,4-d]imidazol-6-yl]pentanoylamino]-3,7-dimethyl-octa-2,6-dienyl] phosphono hydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) C\C(CC\C=C(/C)CNC(=O)CCCC[C@@H]1SC[C@@H]2NC(=O)N[C@H]12)=C/CO[P@](O)(=O)O[P](O)(O)=O
SMILES (CACTVS) CC(CCC=C(C)CNC(=O)CCCC[CH]1SC[CH]2NC(=O)N[CH]12)=CCO[P](O)(=O)O[P](O)(O)=O
Stereo SMILES (OpenEye) C/C(=C\CO[P@@](=O)(O)OP(=O)(O)O)/CC\C=C(/C)\CNC(=O)CCCC[C@H]1[C@@H]2[C@H](CS1)NC(=O)N2
InChI descriptor InChI=1S/C20H35N3O9P2S/c1-14(10-11-31-34(29,30)32-33(26,27)28)6-5-7-15(2)12-21-18(24)9-4-3-8-17-19-16(13-35-17)22-20(25)23-19/h7,10,16-17,19H,3-6,8-9,11-13H2,1-2H3,(H,21,24)(H,29,30)(H2,22,23,25)(H2,26,27,28)/b14-10+,15-7+/t16-,17-,19-/m0/s1
InChIKey descriptor XZJFCDBLIMGOSX-VRLLXNLQSA-N

Status Information

Last modified 2021-03-01
Created 2008-10-15
Release status REL
Model PDB code 3EU5
Processing site PDBJ