PDB Chemical Component GBN

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GBN

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.435 1.469
N1 HN11 1.020 1.008
N1 HN12 1.019 1.009
C2 C1R 1.555 1.530
C2 H21 1.115 1.090
C2 H22 1.114 1.090
C3 C1R 1.586 1.530
C3 C 1.395 1.507
C3 H31 1.115 1.090
C3 H32 1.115 1.090
C1R C2R 1.592 1.530
C1R C6R 1.587 1.530
C2R C3R 1.586 1.530
C2R H2R1 1.114 1.090
C2R H2R2 1.115 1.091
C3R C4R 1.578 1.530
C3R H3R1 1.115 1.090
C3R H3R2 1.115 1.090
C4R C5R 1.570 1.530
C4R H4R1 1.116 1.090
C4R H4R2 1.115 1.090
C5R C6R 1.552 1.530
C5R H5R1 1.116 1.090
C5R H5R2 1.116 1.090
C6R H6R1 1.115 1.090
C6R H6R2 1.115 1.090
C OA 1.255 1.342
C OB 1.248 1.208
OA HOA 0.949 0.967

Bond Angles for GBN

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 HN11 152.0 106.7
C2 N1 HN12 98.2 106.7
N1 C2 C1R 152.0 109.5
N1 C2 H21 98.2 109.5
N1 C2 H22 98.2 109.5
HN11 N1 HN12 98.2 106.7
C1R C2 H21 98.2 109.5
C1R C2 H22 98.2 109.5
C2 C1R C3 87.9 109.5
C2 C1R C2R 125.2 109.5
C2 C1R C6R 112.7 109.5
H21 C2 H22 107.8 109.5
C1R C3 C 128.7 109.5
C1R C3 H31 105.5 109.5
C1R C3 H32 105.5 109.5
C3 C1R C2R 109.4 109.5
C3 C1R C6R 110.6 109.4
C C3 H31 105.5 109.5
C C3 H32 105.5 109.4
C3 C OA 111.6 120.0
C3 C OB 125.1 120.0
H31 C3 H32 103.8 109.5
C2R C1R C6R 108.8 109.4
C1R C2R C3R 107.7 109.5
C1R C2R H2R1 112.9 109.5
C1R C2R H2R2 112.9 109.4
C1R C6R C5R 111.6 109.4
C1R C6R H6R1 111.5 109.5
C1R C6R H6R2 111.4 109.5
C3R C2R H2R1 112.8 109.5
C3R C2R H2R2 112.8 109.5
C2R C3R C4R 109.8 109.4
C2R C3R H3R1 112.1 109.5
C2R C3R H3R2 112.1 109.5
H2R1 C2R H2R2 97.6 109.5
C4R C3R H3R1 112.0 109.5
C4R C3R H3R2 112.1 109.5
C3R C4R C5R 109.0 109.4
C3R C4R H4R1 112.4 109.5
C3R C4R H4R2 112.4 109.4
H3R1 C3R H3R2 98.3 109.5
C5R C4R H4R1 112.4 109.5
C5R C4R H4R2 112.4 109.5
C4R C5R C6R 108.5 109.5
C4R C5R H5R1 112.6 109.4
C4R C5R H5R2 112.6 109.5
H4R1 C4R H4R2 98.0 109.5
C6R C5R H5R1 112.6 109.5
C6R C5R H5R2 112.6 109.5
C5R C6R H6R1 111.4 109.5
C5R C6R H6R2 111.4 109.5
H5R1 C5R H5R2 97.8 109.5
H6R1 C6R H6R2 98.9 109.5
OA C OB 123.3 120.0
C OA HOA 111.6 120.0

Torsion Angles for GBN

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
HN11 N1 C2 HN12 125.4 246.2
C1R C2 N1 H21 234.8 240.0
C1R C2 N1 H22 125.3 120.0
N1 C2 C1R C3 292.2 64.3
N1 C2 C1R C2R 179.8 184.4
N1 C2 C1R C6R 43.6 304.4
H21 C2 N1 H22 250.5 240.0
C2 N1 HN11 HN12 234.7 113.7
HN11 N1 C2 C1R 180.1 174.3
HN11 N1 C2 H21 305.3 294.3
HN11 N1 C2 H22 54.8 54.2
C2 N1 HN12 HN11 157.2 246.2
HN12 N1 C2 C1R 54.7 288.0
HN12 N1 C2 H21 179.9 48.0
HN12 N1 C2 H22 289.4 168.0
C1R C2 N1 HN11 180.1 174.3
C1R C2 N1 HN12 54.7 288.0
N1 C2 C1R H21 125.2 120.0
N1 C2 C1R H22 234.7 240.0
H21 C2 C1R H22 109.5 120.0
C2 C1R C3 C 291.8 182.3
C2 C1R C3 H31 57.1 302.3
C2 C1R C3 H32 166.5 62.3
C3 C1R C2 C2R 112.4 240.0
C3 C1R C2 C6R 248.5 120.0
C2R C1R C2 C6R 136.2 240.0
C2 C1R C2R C3R 281.1 60.0
C2 C1R C2R H2R1 46.4 180.0
C2 C1R C2R H2R2 155.9 300.0
C2 C1R C6R C5R 83.6 300.0
C2 C1R C6R H6R1 208.9 60.0
C2 C1R C6R H6R2 318.4 180.0
H21 C2 N1 HN11 305.3 294.3
H21 C2 N1 HN12 179.9 48.0
N1 C2 H21 C1R 202.8 240.0
N1 C2 H21 H22 101.4 120.0
C1R C2 H21 H22 258.6 240.0
H21 C2 C1R C3 166.9 304.3
H21 C2 C1R C2R 54.6 64.4
H21 C2 C1R C6R 278.4 184.4
H22 C2 N1 HN11 54.8 54.2
H22 C2 N1 HN12 289.4 168.0
N1 C2 H22 C1R 157.2 120.0
N1 C2 H22 H21 258.6 240.0
C1R C2 H22 H21 101.4 120.0
H22 C2 C1R C3 57.4 184.4
H22 C2 C1R C2R 305.1 304.4
H22 C2 C1R C6R 168.9 64.4
C3 C1R C2 H21 166.9 304.3
C3 C1R C2 H22 57.4 184.4
C2 C1R C3 C2R 233.3 120.0
C2 C1R C3 C6R 113.5 240.0
C C3 C1R H31 234.7 240.0
C C3 C1R H32 125.3 120.0
C1R C3 C OA 106.7 174.4
C1R C3 C OB 286.0 354.5
H31 C3 C1R H32 250.6 240.0
C2R C1R C3 C6R 240.2 120.0
C3 C1R C2R C3R 179.6 180.0
C3 C1R C2R H2R1 304.8 300.0
C3 C1R C2R H2R2 54.4 60.0
C3 C1R C6R C5R 180.2 180.0
C3 C1R C6R H6R1 305.4 300.0
C3 C1R C6R H6R2 54.9 60.0
C1R C3 C H31 125.3 120.0
C1R C3 C H32 234.7 240.0
C C3 C1R C2R 58.5 62.2
C C3 C1R C6R 178.3 302.3
H31 C3 C H32 109.5 120.0
OA C C3 OB 180.7 179.9
C3 C OA HOA 180.0 180.0
C1R C3 H31 C 221.4 240.0
C1R C3 H31 H32 110.6 120.0
H31 C3 C1R C2R 183.8 182.3
H31 C3 C1R C6R 303.6 62.3
C C3 H31 H32 249.3 240.1
H31 C3 C OA 341.5 54.4
H31 C3 C OB 160.8 234.4
C1R C3 H32 C 138.6 120.0
C1R C3 H32 H31 249.4 240.0
H32 C3 C1R C2R 293.2 302.3
H32 C3 C1R C6R 53.0 182.3
C C3 H32 H31 110.7 120.0
H32 C3 C OA 232.0 294.4
H32 C3 C OB 51.3 114.5
C2R C1R C2 H21 54.6 64.4
C2R C1R C2 H22 305.1 304.4
C2 C1R C2R C3 101.6 240.0
C2 C1R C2R C6R 222.4 120.0
C2R C1R C3 C 58.5 62.2
C2R C1R C3 H31 183.8 182.3
C2R C1R C3 H32 293.2 302.3
C3 C1R C2R C6R 120.9 240.0
C2R C1R C6R C5R 300.3 60.0
C2R C1R C6R H6R1 65.6 180.0
C2R C1R C6R H6R2 175.1 300.0
C3R C2R C1R H2R1 234.8 240.0
C3R C2R C1R H2R2 125.2 120.0
C1R C2R C3R C4R 298.5 60.0
C1R C2R C3R H3R1 63.7 180.0
C1R C2R C3R H3R2 173.2 300.0
H2R1 C2R C1R H2R2 250.5 240.0
C6R C1R C2 H21 278.4 184.4
C6R C1R C2 H22 168.9 64.4
C2 C1R C6R C3 263.4 120.0
C2 C1R C6R C2R 143.3 240.0
C6R C1R C3 C 178.3 302.3
C6R C1R C3 H31 303.6 62.3
C6R C1R C3 H32 53.0 182.3
C3 C1R C6R C2R 239.9 120.0
C6R C1R C2R C3R 58.7 300.0
C6R C1R C2R H2R1 183.9 60.0
C6R C1R C2R H2R2 293.5 180.0
C4R C5R C6R C1R 60.0 300.0
C1R C6R C5R H5R1 294.7 180.0
C1R C6R C5R H5R2 185.3 60.0
C5R C6R C1R H6R1 234.7 240.0
C5R C6R C1R H6R2 125.2 120.0
H6R1 C6R C1R H6R2 250.5 240.0
C3R C2R C1R C6R 58.7 300.0
C1R C2R C3R H2R1 125.3 120.0
C1R C2R C3R H2R2 234.8 240.0
H2R1 C2R C3R H2R2 109.5 120.0
C4R C3R C2R H3R1 234.8 240.0
C4R C3R C2R H3R2 125.3 120.0
C2R C3R C4R C5R 62.7 300.0
C2R C3R C4R H4R1 188.0 60.0
C2R C3R C4R H4R2 297.4 180.0
H3R1 C3R C2R H3R2 250.5 240.0
H2R1 C2R C1R C6R 183.9 60.0
C1R C2R H2R1 C3R 237.6 240.0
C1R C2R H2R1 H2R2 118.8 120.0
C3R C2R H2R1 H2R2 241.2 240.0
H2R1 C2R C3R C4R 173.2 300.0
H2R1 C2R C3R H3R1 298.5 60.0
H2R1 C2R C3R H3R2 48.0 180.0
H2R2 C2R C1R C6R 293.5 180.0
C1R C2R H2R2 C3R 122.4 120.0
C1R C2R H2R2 H2R1 241.2 240.0
C3R C2R H2R2 H2R1 118.8 120.0
H2R2 C2R C3R C4R 63.7 180.0
H2R2 C2R C3R H3R1 189.0 300.0
H2R2 C2R C3R H3R2 298.5 60.0
C4R C3R C2R H2R1 173.2 300.0
C4R C3R C2R H2R2 63.7 180.0
C2R C3R C4R H3R1 125.3 120.0
C2R C3R C4R H3R2 234.7 240.0
H3R1 C3R C4R H3R2 109.4 120.0
C5R C4R C3R H4R1 234.7 240.0
C5R C4R C3R H4R2 125.3 120.0
C3R C4R C5R C6R 299.5 60.0
C3R C4R C5R H5R1 64.8 180.0
C3R C4R C5R H5R2 174.2 300.0
H4R1 C4R C3R H4R2 250.6 240.0
H3R1 C3R C2R H2R1 298.5 60.0
H3R1 C3R C2R H2R2 189.0 300.0
C2R C3R H3R1 C4R 236.0 240.0
C2R C3R H3R1 H3R2 118.0 120.0
C4R C3R H3R1 H3R2 242.1 240.0
H3R1 C3R C4R C5R 297.4 180.0
H3R1 C3R C4R H4R1 62.7 300.0
H3R1 C3R C4R H4R2 172.1 60.0
H3R2 C3R C2R H2R1 48.0 180.0
H3R2 C3R C2R H2R2 298.5 60.0
C2R C3R H3R2 C4R 124.0 120.0
C2R C3R H3R2 H3R1 241.9 240.0
C4R C3R H3R2 H3R1 117.9 120.0
H3R2 C3R C4R C5R 188.0 60.0
H3R2 C3R C4R H4R1 313.3 180.0
H3R2 C3R C4R H4R2 62.7 300.0
C1R C6R C5R C4R 60.0 300.0
C5R C4R C3R H3R1 297.4 180.0
C5R C4R C3R H3R2 188.0 60.0
C3R C4R C5R H4R1 125.3 120.0
C3R C4R C5R H4R2 234.7 240.1
H4R1 C4R C5R H4R2 109.4 120.0
C6R C5R C4R H5R1 234.7 240.0
C6R C5R C4R H5R2 125.3 120.0
C4R C5R C6R H6R1 294.7 180.0
C4R C5R C6R H6R2 185.3 60.0
H5R1 C5R C4R H5R2 250.6 240.0
H4R1 C4R C3R H3R1 62.7 300.0
H4R1 C4R C3R H3R2 313.3 180.0
C3R C4R H4R1 C5R 236.6 240.0
C3R C4R H4R1 H4R2 118.3 120.0
C5R C4R H4R1 H4R2 241.7 240.0
H4R1 C4R C5R C6R 174.2 300.0
H4R1 C4R C5R H5R1 299.5 60.0
H4R1 C4R C5R H5R2 48.9 180.0
H4R2 C4R C3R H3R1 172.1 60.0
H4R2 C4R C3R H3R2 62.7 300.0
C3R C4R H4R2 C5R 123.4 119.9
C3R C4R H4R2 H4R1 241.7 240.0
C5R C4R H4R2 H4R1 118.3 120.0
H4R2 C4R C5R C6R 64.8 180.0
H4R2 C4R C5R H5R1 190.1 300.0
H4R2 C4R C5R H5R2 299.5 59.9
C1R C6R C5R H6R1 125.3 120.0
C1R C6R C5R H6R2 234.7 240.0
C6R C5R C4R H4R1 174.2 300.0
C6R C5R C4R H4R2 64.8 180.0
C4R C5R C6R H5R1 125.3 119.9
C4R C5R C6R H5R2 234.7 240.0
H5R1 C5R C6R H5R2 109.4 120.0
H6R1 C6R C5R H6R2 109.4 120.0
H5R1 C5R C4R H4R1 299.5 60.0
H5R1 C5R C4R H4R2 190.1 300.0
C4R C5R H5R1 C6R 236.9 240.0
C4R C5R H5R1 H5R2 118.5 120.0
C6R C5R H5R1 H5R2 241.5 240.0
H5R1 C5R C6R H6R1 169.4 60.0
H5R1 C5R C6R H6R2 60.0 300.0
H5R2 C5R C4R H4R1 48.9 180.0
H5R2 C5R C4R H4R2 299.5 59.9
C4R C5R H5R2 C6R 123.0 120.0
C4R C5R H5R2 H5R1 241.5 240.1
C6R C5R H5R2 H5R1 118.5 120.0
H5R2 C5R C6R H6R1 60.0 300.0
H5R2 C5R C6R H6R2 310.5 180.0
C1R C6R H6R1 C5R 234.6 240.0
C1R C6R H6R1 H6R2 117.4 120.0
H6R1 C6R C5R H5R1 169.4 60.0
H6R1 C6R C5R H5R2 60.0 300.0
C5R C6R H6R1 H6R2 242.8 240.0
C1R C6R H6R2 C5R 125.4 120.0
C1R C6R H6R2 H6R1 242.6 240.0
H6R2 C6R C5R H5R1 60.0 300.0
H6R2 C6R C5R H5R2 310.5 180.0
C5R C6R H6R2 H6R1 117.2 120.0
OA C C3 H31 341.5 54.4
OA C C3 H32 232.0 294.4
C3 C OA OB 179.3 180.1
OB C C3 H31 160.8 234.4
OB C C3 H32 51.3 114.5
C3 C OB OA 180.8 179.9
OB C OA HOA 0.7 360.0
HOA OA C OB 0.7 360.0