PDB Chemical Component GBL
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for GBL
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
CA |
C |
1.494 |
1.513 |
CA |
CB |
1.541 |
1.545 |
CA |
HAC1 |
1.100 |
1.090 |
CA |
HAC2 |
1.100 |
1.091 |
C |
O |
1.226 |
1.208 |
C |
OD |
1.375 |
1.340 |
CB |
CG |
1.513 |
1.545 |
CB |
HBC1 |
1.100 |
1.090 |
CB |
HBC2 |
1.100 |
1.090 |
CG |
OD |
1.460 |
1.461 |
CG |
HGC1 |
1.099 |
1.090 |
CG |
HGC2 |
1.100 |
1.089 |
Bond Angles for GBL
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C |
CA |
CB |
102.1 |
104.8 |
C |
CA |
HAC1 |
113.5 |
110.4 |
C |
CA |
HAC2 |
112.0 |
110.4 |
CA |
C |
O |
123.3 |
125.1 |
CA |
C |
OD |
113.1 |
109.8 |
CB |
CA |
HAC1 |
113.6 |
110.4 |
CB |
CA |
HAC2 |
112.0 |
110.4 |
CA |
CB |
CG |
105.0 |
102.2 |
CA |
CB |
HBC1 |
111.9 |
110.9 |
CA |
CB |
HBC2 |
111.0 |
110.9 |
HAC1 |
CA |
HAC2 |
104.0 |
110.4 |
O |
C |
OD |
123.6 |
125.1 |
C |
OD |
CG |
108.2 |
109.8 |
CG |
CB |
HBC1 |
111.9 |
110.9 |
CG |
CB |
HBC2 |
111.0 |
110.9 |
CB |
CG |
OD |
106.2 |
104.3 |
CB |
CG |
HGC1 |
111.3 |
110.4 |
CB |
CG |
HGC2 |
110.5 |
110.5 |
HBC1 |
CB |
HBC2 |
106.1 |
110.9 |
OD |
CG |
HGC1 |
111.3 |
110.7 |
OD |
CG |
HGC2 |
110.6 |
110.3 |
HGC1 |
CG |
HGC2 |
107.0 |
110.5 |
Torsion Angles for GBL
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
CB |
CA |
C |
HAC1 |
122.6 |
241.2 |
CB |
CA |
C |
HAC2 |
240.0 |
118.9 |
C |
CA |
CB |
CG |
19.1 |
15.3 |
C |
CA |
CB |
HBC1 |
257.5 |
133.6 |
C |
CA |
CB |
HBC2 |
139.2 |
257.2 |
HAC1 |
CA |
C |
HAC2 |
117.4 |
237.7 |
O |
C |
CA |
OD |
179.4 |
179.7 |
CA |
C |
OD |
CG |
354.0 |
338.7 |
C |
CA |
CB |
HAC1 |
237.4 |
118.8 |
C |
CA |
CB |
HAC2 |
120.0 |
241.2 |
CB |
CA |
C |
O |
170.7 |
182.3 |
CB |
CA |
C |
OD |
351.3 |
2.6 |
HAC1 |
CA |
CB |
HAC2 |
242.6 |
122.3 |
CG |
CB |
CA |
HBC1 |
121.6 |
241.8 |
CG |
CB |
CA |
HBC2 |
240.0 |
118.2 |
CA |
CB |
CG |
OD |
336.6 |
333.0 |
CA |
CB |
CG |
HGC1 |
215.3 |
91.9 |
CA |
CB |
CG |
HGC2 |
96.6 |
214.4 |
HBC1 |
CB |
CA |
HBC2 |
118.3 |
236.4 |
C |
CA |
HAC1 |
CB |
116.0 |
244.6 |
C |
CA |
HAC1 |
HAC2 |
238.0 |
122.3 |
HAC1 |
CA |
C |
O |
48.1 |
301.2 |
HAC1 |
CA |
C |
OD |
228.7 |
121.5 |
CB |
CA |
HAC1 |
HAC2 |
122.0 |
237.7 |
HAC1 |
CA |
CB |
CG |
141.7 |
256.5 |
HAC1 |
CA |
CB |
HBC1 |
20.1 |
14.7 |
HAC1 |
CA |
CB |
HBC2 |
261.8 |
138.3 |
C |
CA |
HAC2 |
CB |
246.0 |
115.4 |
C |
CA |
HAC2 |
HAC1 |
123.0 |
237.7 |
HAC2 |
CA |
C |
O |
290.7 |
63.5 |
HAC2 |
CA |
C |
OD |
111.3 |
243.8 |
CB |
CA |
HAC2 |
HAC1 |
237.0 |
122.3 |
HAC2 |
CA |
CB |
CG |
259.1 |
134.2 |
HAC2 |
CA |
CB |
HBC1 |
137.5 |
252.4 |
HAC2 |
CA |
CB |
HBC2 |
19.2 |
16.0 |
O |
C |
CA |
CB |
170.7 |
182.3 |
O |
C |
CA |
HAC1 |
48.1 |
301.2 |
O |
C |
CA |
HAC2 |
290.7 |
63.5 |
CA |
C |
O |
OD |
180.7 |
180.3 |
O |
C |
OD |
CG |
174.6 |
159.0 |
OD |
C |
CA |
CB |
351.3 |
2.6 |
OD |
C |
CA |
HAC1 |
228.7 |
121.5 |
OD |
C |
CA |
HAC2 |
111.3 |
243.8 |
CA |
C |
OD |
O |
179.4 |
179.7 |
CB |
CG |
OD |
C |
18.5 |
31.0 |
C |
OD |
CG |
HGC1 |
139.8 |
272.2 |
C |
OD |
CG |
HGC2 |
258.5 |
149.6 |
CG |
CB |
CA |
HAC1 |
141.7 |
256.5 |
CG |
CB |
CA |
HAC2 |
259.1 |
134.2 |
CA |
CB |
CG |
HBC1 |
238.3 |
118.2 |
CA |
CB |
CG |
HBC2 |
120.0 |
241.8 |
C |
OD |
CG |
CB |
18.5 |
31.0 |
HBC1 |
CB |
CG |
HBC2 |
241.7 |
123.6 |
OD |
CG |
CB |
HGC1 |
121.2 |
241.1 |
OD |
CG |
CB |
HGC2 |
240.0 |
118.5 |
HGC1 |
CG |
CB |
HGC2 |
118.7 |
237.4 |
HBC1 |
CB |
CA |
HAC1 |
20.1 |
14.7 |
HBC1 |
CB |
CA |
HAC2 |
137.5 |
252.4 |
CA |
CB |
HBC1 |
CG |
117.6 |
247.2 |
CA |
CB |
HBC1 |
HBC2 |
238.8 |
123.6 |
CG |
CB |
HBC1 |
HBC2 |
121.2 |
236.4 |
HBC1 |
CB |
CG |
OD |
98.2 |
214.8 |
HBC1 |
CB |
CG |
HGC1 |
337.0 |
333.7 |
HBC1 |
CB |
CG |
HGC2 |
218.3 |
96.2 |
HBC2 |
CB |
CA |
HAC1 |
261.8 |
138.3 |
HBC2 |
CB |
CA |
HAC2 |
19.2 |
16.0 |
CA |
CB |
HBC2 |
CG |
243.6 |
112.7 |
CA |
CB |
HBC2 |
HBC1 |
121.8 |
236.4 |
CG |
CB |
HBC2 |
HBC1 |
238.2 |
123.6 |
HBC2 |
CB |
CG |
OD |
216.5 |
91.1 |
HBC2 |
CB |
CG |
HGC1 |
95.3 |
210.0 |
HBC2 |
CB |
CG |
HGC2 |
336.6 |
332.6 |
OD |
CG |
CB |
HBC1 |
98.2 |
214.8 |
OD |
CG |
CB |
HBC2 |
216.5 |
91.1 |
CB |
CG |
OD |
HGC1 |
238.8 |
118.8 |
CB |
CG |
OD |
HGC2 |
120.0 |
241.4 |
HGC1 |
CG |
OD |
HGC2 |
241.2 |
122.6 |
HGC1 |
CG |
CB |
HBC1 |
337.0 |
333.7 |
HGC1 |
CG |
CB |
HBC2 |
95.3 |
210.0 |
CB |
CG |
HGC1 |
OD |
118.3 |
245.0 |
CB |
CG |
HGC1 |
HGC2 |
239.2 |
122.5 |
OD |
CG |
HGC1 |
HGC2 |
120.9 |
237.5 |
HGC2 |
CG |
CB |
HBC1 |
218.3 |
96.2 |
HGC2 |
CG |
CB |
HBC2 |
336.6 |
332.6 |
CB |
CG |
HGC2 |
OD |
242.6 |
114.8 |
CB |
CG |
HGC2 |
HGC1 |
121.3 |
237.5 |
OD |
CG |
HGC2 |
HGC1 |
238.7 |
122.7 |