PDB Chemical Component GB3

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GB3

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C15	C14	1.438	1.383
C15	C10	1.442	1.383
C15	H15	1.080	1.080
C14	C13	1.412	1.382
C14	H14	1.080	1.079
C13	C12	1.408	1.382
C13	H13	1.080	1.081
C12	C11	1.428	1.382
C12	H12	1.080	1.080
C11	C10	1.449	1.382
C11	H11	1.080	1.081
C10	C8	1.539	1.508
C8	C9	1.544	1.529
C8	N7	1.468	1.469
C8	H8	1.100	1.090
C9	O9	1.419	1.429
C9	H91	1.100	1.089
C9	H92	1.100	1.090
O9	HO9	0.950	0.967
N7	C6	1.463	1.470
N7	HN7	1.000	1.009
C6	C5	1.525	1.530
C6	H61	1.100	1.090
C6	H62	1.100	1.090
C5	N1	1.474	1.479
C5	C4	1.531	1.549
C5	H5	1.100	1.090
N1	C2	1.458	1.474
N1	HN1	1.000	1.010
C2	C3	1.515	1.542
C2	C21	1.508	1.531
C2	H2	1.100	1.090
C3	O3	1.423	1.429
C3	C4	1.529	1.554
C3	H3	1.100	1.091
O3	HO3	0.950	0.967
C4	O4	1.421	1.429
C4	H4	1.100	1.090
O4	HO4	0.950	0.968
C21	H211	1.100	1.089
C21	H212	1.100	1.090
C21	H213	1.100	1.089

Bond Angles for GB3

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C14	C15	C10	120.5	120.0
C14	C15	H15	119.7	120.0
C15	C14	C13	121.7	120.0
C15	C14	H14	119.2	120.0
C10	C15	H15	119.8	120.0
C15	C10	C11	117.9	120.0
C15	C10	C8	119.8	120.0
C13	C14	H14	119.2	120.1
C14	C13	C12	117.4	120.1
C14	C13	H13	121.3	119.9
C12	C13	H13	121.3	120.0
C13	C12	C11	123.6	119.9
C13	C12	H12	118.2	120.1
C11	C12	H12	118.2	120.0
C12	C11	C10	118.9	120.0
C12	C11	H11	120.5	120.0
C10	C11	H11	120.5	120.0
C11	C10	C8	122.3	120.0
C10	C8	C9	111.7	109.5
C10	C8	N7	103.4	109.4
C10	C8	H8	114.5	109.4
C9	C8	N7	115.9	109.5
C9	C8	H8	101.6	109.5
C8	C9	O9	107.9	109.5
C8	C9	H91	110.3	109.5
C8	C9	H92	110.0	109.5
N7	C8	H8	110.2	109.5
C8	N7	C6	127.0	106.7
C8	N7	HN7	104.0	106.7
O9	C9	H91	110.4	109.4
O9	C9	H92	110.0	109.5
C9	O9	HO9	109.5	106.8
H91	C9	H92	108.3	109.5
C6	N7	HN7	104.0	106.7
N7	C6	C5	118.1	109.5
N7	C6	H61	104.7	109.5
N7	C6	H62	106.7	109.4
C5	C6	H61	104.7	109.5
C5	C6	H62	106.7	109.5
C6	C5	N1	109.4	110.4
C6	C5	C4	112.6	110.5
C6	C5	H5	104.9	110.3
H61	C6	H62	116.5	109.4
N1	C5	C4	100.1	104.8
N1	C5	H5	116.5	110.4
C5	N1	C2	110.4	108.6
C5	N1	HN1	109.2	106.7
C4	C5	H5	113.5	110.3
C5	C4	C3	108.3	101.8
C5	C4	O4	106.1	111.0
C5	C4	H4	112.7	111.0
C2	N1	HN1	109.2	106.7
N1	C2	C3	99.5	107.4
N1	C2	C21	112.2	109.9
N1	C2	H2	114.5	109.9
C3	C2	C21	110.4	109.9
C3	C2	H2	116.2	109.9
C2	C3	O3	119.3	110.8
C2	C3	C4	101.9	102.9
C2	C3	H3	109.9	110.9
C21	C2	H2	104.3	109.9
C2	C21	H211	109.5	109.5
C2	C21	H212	109.5	109.4
C2	C21	H213	109.5	109.5
O3	C3	C4	114.0	110.7
O3	C3	H3	96.6	110.6
C3	O3	HO3	109.5	106.8
C4	C3	H3	115.7	110.7
C3	C4	O4	110.5	111.1
C3	C4	H4	108.5	110.9
O4	C4	H4	110.6	110.9
C4	O4	HO4	109.5	106.8
H211	C21	H212	109.5	109.5
H211	C21	H213	109.4	109.5
H212	C21	H213	109.5	109.5

Torsion Angles for GB3

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C10	C15	C14	H15	180.0	180.5
C14	C15	C10	C11	359.6	359.5
C14	C15	C10	C8	178.2	179.8
C13	C14	C15	H14	180.0	180.2
C15	C14	C13	C12	0.1	359.8
C15	C14	C13	H13	180.1	179.8
C14	C15	C10	H15	180.0	179.5
C10	C15	C14	C13	0.2	0.5
C10	C15	C14	H14	180.2	180.2
C12	C11	C10	C15	0.2	0.3
C15	C10	C11	H11	180.2	180.2
C11	C10	C15	C8	181.4	179.7
C15	C10	C8	C9	240.9	79.7
C15	C10	C8	N7	115.5	319.7
C15	C10	C8	H8	355.7	199.7
C14	C15	H15	C10	180.0	180.5
H15	C15	C14	C13	180.2	180.0
H15	C15	C14	H14	0.2	359.7
H15	C15	C10	C11	179.6	180.0
H15	C15	C10	C8	358.2	0.3
C13	C14	C15	C10	0.2	0.5
C13	C14	C15	H15	180.2	180.0
C15	C14	C13	H14	180.0	179.8
C12	C13	C14	H13	180.0	180.0
C14	C13	C12	C11	359.7	360.0
C14	C13	C12	H12	179.6	180.0
H14	C14	C15	C10	180.2	180.2
H14	C14	C15	H15	0.2	359.7
C15	C14	H14	C13	180.0	180.2
H14	C14	C13	C12	180.2	180.0
H14	C14	C13	H13	0.1	0.0
C12	C13	C14	H14	180.2	180.0
C14	C13	C12	H13	180.0	180.0
C11	C12	C13	H12	180.0	180.0
C13	C12	C11	C10	0.2	360.0
C13	C12	C11	H11	180.1	180.0
H13	C13	C14	H14	0.1	0.0
C14	C13	H13	C12	180.0	180.0
H13	C13	C12	C11	179.7	180.0
H13	C13	C12	H12	359.7	0.0
C15	C10	C11	C12	0.2	0.3
C11	C12	C13	H13	179.7	180.0
C13	C12	C11	H12	180.0	180.0
C10	C11	C12	H11	180.0	180.0
C12	C11	C10	C8	181.6	180.0
H12	C12	C13	H13	359.7	0.0
C13	C12	H12	C11	180.0	180.0
H12	C12	C11	C10	180.2	179.9
H12	C12	C11	H11	0.2	360.0
C11	C10	C15	H15	179.6	180.0
C15	C10	C11	C8	178.6	180.3
C10	C11	C12	H12	180.2	179.9
C12	C11	C10	H11	180.0	180.0
C11	C10	C8	C9	59.4	260.0
C11	C10	C8	N7	294.1	140.0
C11	C10	C8	H8	174.2	20.0
H11	C11	C12	H12	0.2	360.0
C12	C11	H11	C10	180.0	180.0
H11	C11	C10	C8	1.6	359.9
C8	C10	C15	H15	358.2	0.3
C15	C10	C8	C11	181.4	179.7
C8	C10	C11	H11	1.6	359.9
C9	C8	C10	N7	125.3	120.0
C9	C8	C10	H8	245.2	240.0
C10	C8	C9	O9	176.7	305.0
C10	C8	C9	H91	56.0	65.0
C10	C8	C9	H92	296.7	185.0
N7	C8	C10	H8	119.9	120.0
C10	C8	N7	C6	299.5	205.0
C10	C8	N7	HN7	59.4	91.3
C10	C8	C9	N7	241.9	240.0
C10	C8	C9	H8	122.5	120.0
N7	C8	C9	H8	240.6	239.9
C9	C8	N7	C6	176.9	85.0
C9	C8	N7	HN7	296.9	331.3
O9	C9	C8	H91	120.6	240.0
O9	C9	C8	H92	240.0	120.0
C8	C9	O9	HO9	5.0	180.0
H91	C9	C8	H92	119.4	240.0
C10	C8	N7	C9	122.6	120.0
C10	C8	N7	H8	237.2	240.0
C9	C8	N7	H8	114.6	120.0
N7	C8	C9	O9	294.8	65.0
N7	C8	C9	H91	174.1	185.0
N7	C8	C9	H92	54.8	305.0
C6	N7	C8	HN7	240.0	113.7
C8	N7	C6	C5	193.9	180.0
C8	N7	C6	H61	77.9	60.0
C8	N7	C6	H62	313.9	300.0
C10	C8	H8	C9	239.4	240.0
C10	C8	H8	N7	116.0	120.0
C9	C8	H8	N7	236.6	240.0
H8	C8	C9	O9	54.2	185.0
H8	C8	C9	H91	293.5	305.0
H8	C8	C9	H92	174.2	65.0
H8	C8	N7	C6	62.2	325.0
H8	C8	N7	HN7	182.2	211.2
O9	C9	C8	N7	294.8	65.0
O9	C9	C8	H8	54.2	185.0
C8	C9	O9	H91	239.4	120.0
C8	C9	O9	H92	120.0	240.0
H91	C9	O9	H92	240.6	120.0
H91	C9	C8	N7	174.1	185.0
H91	C9	C8	H8	293.5	305.0
C8	C9	H91	O9	119.1	240.0
C8	C9	H91	H92	239.6	120.0
O9	C9	H91	H92	120.5	240.0
H91	C9	O9	HO9	125.6	60.0
H92	C9	C8	N7	54.8	305.0
H92	C9	C8	H8	174.2	65.0
C8	C9	H92	O9	241.3	120.0
C8	C9	H92	H91	120.6	240.0
O9	C9	H92	H91	239.3	120.0
H92	C9	O9	HO9	245.0	300.1
HO9	O9	C9	H91	125.6	60.0
HO9	O9	C9	H92	245.0	300.1
C6	N7	C8	H8	62.2	325.0
C8	N7	C6	HN7	120.0	246.3
C5	C6	N7	H61	115.9	120.1
C5	C6	N7	H62	240.0	240.0
N7	C6	C5	N1	158.4	56.4
N7	C6	C5	C4	268.8	171.9
N7	C6	C5	H5	32.7	294.2
H61	C6	N7	H62	124.1	120.0
HN7	N7	C8	H8	182.2	211.2
C8	N7	HN7	C6	225.5	113.7
HN7	N7	C6	C5	73.8	293.8
HN7	N7	C6	H61	317.9	173.7
HN7	N7	C6	H62	193.8	53.8
C5	C6	N7	HN7	73.8	293.8
N7	C6	C5	H61	244.1	240.0
N7	C6	C5	H62	120.0	120.0
H61	C6	C5	H62	235.9	240.0
N1	C5	C6	C4	249.6	244.6
N1	C5	C6	H5	125.7	122.3
C6	C5	N1	C2	89.9	143.0
C6	C5	N1	HN1	209.9	257.7
C4	C5	C6	H5	236.1	237.7
C6	C5	C4	C3	244.5	204.1
C6	C5	C4	O4	125.8	85.9
C6	C5	C4	H4	4.5	322.1
H61	C6	N7	HN7	317.9	173.7
N7	C6	H61	C5	124.9	120.0
N7	C6	H61	H62	242.5	240.0
C5	C6	H61	H62	117.6	120.0
H61	C6	C5	N1	274.3	176.5
H61	C6	C5	C4	24.7	291.9
H61	C6	C5	H5	148.6	54.2
H62	C6	N7	HN7	193.8	53.8
N7	C6	H62	C5	232.9	240.0
N7	C6	H62	H61	116.5	120.0
C5	C6	H62	H61	243.5	240.0
H62	C6	C5	N1	38.4	296.5
H62	C6	C5	C4	148.8	51.9
H62	C6	C5	H5	272.7	174.2
N1	C5	C6	H61	274.3	176.5
N1	C5	C6	H62	38.4	296.5
C6	C5	N1	C4	118.5	119.0
C6	C5	N1	H5	241.3	237.7
C4	C5	N1	H5	122.8	118.8
N1	C5	C4	C3	0.6	323.0
N1	C5	C4	O4	241.9	204.8
N1	C5	C4	H4	120.7	81.0
C2	N1	C5	HN1	240.0	245.3
C5	N1	C2	C3	44.8	358.9
C5	N1	C2	C21	161.6	118.4
C5	N1	C2	H2	280.2	239.4
C4	C5	C6	H61	24.7	291.9
C4	C5	C6	H62	148.8	51.9
C6	C5	C4	N1	243.9	241.1
C6	C5	C4	H5	119.0	122.3
N1	C5	C4	H5	235.1	241.2
C4	C5	N1	C2	331.5	24.1
C4	C5	N1	HN1	91.5	138.8
C2	C3	C4	C5	25.2	35.5
O3	C3	C4	C5	255.2	277.1
C5	C4	C3	H3	144.4	154.0
C3	C4	C5	O4	118.7	118.2
C3	C4	C5	H4	239.9	242.0
O4	C4	C5	H4	121.2	123.8
C5	C4	O4	HO4	105.9	180.0
H5	C5	C6	H61	148.6	54.2
H5	C5	C6	H62	272.7	174.2
C6	C5	H5	N1	121.2	122.3
C6	C5	H5	C4	236.7	237.6
N1	C5	H5	C4	115.5	115.3
H5	C5	N1	C2	208.6	265.3
H5	C5	N1	HN1	328.7	20.0
H5	C5	C4	C3	125.5	81.8
H5	C5	C4	O4	6.8	323.6
H5	C5	C4	H4	245.6	199.8
C2	N1	C5	C4	331.5	24.1
C2	N1	C5	H5	208.6	265.3
C5	N1	C2	HN1	120.0	114.7
C3	C2	N1	C21	243.3	240.5
C3	C2	N1	H2	124.6	119.5
N1	C2	C3	O3	86.3	96.2
N1	C2	C3	C4	319.7	337.9
N1	C2	C3	H3	196.4	219.5
C21	C2	N1	H2	241.3	239.0
N1	C2	C21	H211	310.3	61.7
N1	C2	C21	H212	190.3	181.7
N1	C2	C21	H213	70.3	301.6
HN1	N1	C5	C4	91.5	138.8
HN1	N1	C5	H5	328.7	20.0
C5	N1	HN1	C2	239.2	244.1
HN1	N1	C2	C3	284.8	244.3
HN1	N1	C2	C21	41.6	3.8
HN1	N1	C2	H2	160.2	124.7
C5	C4	C3	C2	25.2	35.5
C3	C2	N1	HN1	284.8	244.3
N1	C2	C3	C21	118.1	119.5
N1	C2	C3	H2	236.6	240.5
C21	C2	C3	H2	118.5	121.0
C3	C2	C21	H211	60.3	179.7
C3	C2	C21	H212	300.3	299.6
C3	C2	C21	H213	180.3	59.6
O3	C3	C2	C4	126.6	118.3
O3	C3	C2	H3	249.8	236.7
C2	C3	O3	HO3	17.2	185.1
C4	C3	C2	H3	123.3	118.4
C2	C3	C4	O4	141.0	153.7
C2	C3	C4	H4	262.5	277.4
C21	C2	N1	HN1	41.6	3.8
N1	C2	C21	C3	250.0	242.0
N1	C2	C21	H2	124.5	121.0
C3	C2	C21	H2	234.5	238.9
C21	C2	C3	O3	328.2	336.8
C21	C2	C3	C4	201.6	218.4
C21	C2	C3	H3	78.3	100.0
H211	C21	C2	H212	120.0	240.0
H211	C21	C2	H213	240.0	120.1
H212	C21	C2	H213	120.0	240.0
H2	C2	N1	HN1	160.2	124.7
N1	C2	H2	C3	115.2	118.0
N1	C2	H2	C21	237.0	239.0
C3	C2	H2	C21	121.8	121.1
H2	C2	C3	O3	209.7	215.7
H2	C2	C3	C4	83.1	97.4
H2	C2	C3	H3	319.8	339.0
H2	C2	C21	H211	185.8	300.7
H2	C2	C21	H212	65.8	60.7
H2	C2	C21	H213	305.8	180.7
C5	C4	C3	O3	255.2	277.1
O3	C3	C2	C21	328.2	336.8
O3	C3	C2	H2	209.7	215.7
C2	C3	O3	C4	239.4	246.5
C2	C3	O3	H3	117.3	123.4
C4	C3	O3	H3	238.0	236.9
O3	C3	C4	O4	11.1	35.3
O3	C3	C4	H4	132.5	159.0
C3	C4	C5	H5	125.5	81.8
C5	C4	C3	O4	244.2	241.8
C5	C4	C3	H4	122.7	118.1
C4	C3	C2	C21	201.6	218.4
C4	C3	C2	H2	83.1	97.4
C2	C3	C4	O3	129.9	118.4
C2	C3	C4	H3	240.8	241.4
O3	C3	C4	H3	110.8	123.0
C4	C3	O3	HO3	137.8	298.6
O4	C4	C3	H4	238.5	236.3
C3	C4	O4	HO4	348.8	67.6
H3	C3	C2	C21	78.3	100.0
H3	C3	C2	H2	319.8	339.0
C2	C3	H3	O3	235.5	236.7
C2	C3	H3	C4	114.8	113.6
O3	C3	H3	C4	239.3	236.9
H3	C3	O3	HO3	259.9	61.7
H3	C3	C4	O4	260.3	272.2
H3	C3	C4	H4	21.7	36.0
HO3	O3	C3	C4	137.8	298.6
HO3	O3	C3	H3	259.9	61.7
O4	C4	C5	H5	6.8	323.6
C5	C4	O4	C3	117.2	112.4
C5	C4	O4	H4	237.4	236.2
O4	C4	C3	H3	260.3	272.2
C3	C4	O4	H4	120.2	123.7
H4	C4	C5	H5	245.6	199.8
C5	C4	H4	C3	240.1	247.7
C5	C4	H4	O4	118.6	123.8
H4	C4	C3	H3	21.7	36.0
C3	C4	H4	O4	238.6	236.2
H4	C4	O4	HO4	228.5	303.8
HO4	O4	C4	H4	228.5	303.8
H211	C21	C2	H2	185.8	300.7
C2	C21	H211	H212	240.0	119.9
C2	C21	H211	H213	120.0	240.0
H212	C21	H211	H213	240.0	120.0
H212	C21	C2	H2	65.8	60.7
C2	C21	H212	H211	120.0	240.0
C2	C21	H212	H213	239.9	120.0
H211	C21	H212	H213	119.9	239.9
H213	C21	C2	H2	305.8	180.7
C2	C21	H213	H211	240.0	120.0
C2	C21	H213	H212	120.0	240.1
H211	C21	H213	H212	240.0	120.0