PDB Chemical Component GB1

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GB1

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C15	C14	1.406	1.383
C15	C10	1.405	1.382
C15	H15	1.080	1.080
C14	C13	1.385	1.382
C14	H14	1.080	1.079
C13	C12	1.377	1.383
C13	H13	1.080	1.080
C12	C11	1.399	1.382
C12	H12	1.080	1.080
C11	C10	1.401	1.383
C11	H11	1.080	1.081
C10	C8	1.542	1.507
C8	C9	1.522	1.530
C8	N7	1.481	1.469
C8	H8	1.100	1.090
C9	O9	1.417	1.428
C9	H91	1.100	1.090
C9	H92	1.100	1.090
O9	HO9	0.950	0.967
N7	C6	1.462	1.469
N7	HN7	1.000	1.010
C6	C5	1.520	1.530
C6	H61	1.100	1.090
C6	H62	1.100	1.091
C5	N1	1.476	1.479
C5	C4	1.527	1.539
C5	H5	1.100	1.090
N1	C2	1.459	1.485
N1	HN1	1.000	1.009
C2	C3	1.528	1.549
C2	H21	1.100	1.090
C2	H22	1.100	1.090
C3	O3	1.412	1.428
C3	C4	1.524	1.550
C3	H3	1.100	1.091
O3	HO3	0.950	0.968
C4	O4	1.414	1.430
C4	H4	1.100	1.090
O4	HO4	0.950	0.967

Bond Angles for GB1

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C14	C15	C10	122.6	120.0
C14	C15	H15	118.7	119.9
C15	C14	C13	120.3	120.0
C15	C14	H14	119.8	120.0
C10	C15	H15	118.7	120.1
C15	C10	C11	117.3	120.0
C15	C10	C8	122.7	120.0
C13	C14	H14	119.8	120.0
C14	C13	C12	116.1	120.0
C14	C13	H13	121.9	120.1
C12	C13	H13	121.9	119.9
C13	C12	C11	125.6	120.0
C13	C12	H12	117.2	120.0
C11	C12	H12	117.2	120.0
C12	C11	C10	118.0	120.0
C12	C11	H11	121.0	120.0
C10	C11	H11	121.0	120.0
C11	C10	C8	120.0	120.0
C10	C8	C9	108.1	109.5
C10	C8	N7	103.9	109.5
C10	C8	H8	117.9	109.5
C9	C8	N7	119.4	109.5
C9	C8	H8	102.0	109.4
C8	C9	O9	104.0	109.5
C8	C9	H91	112.5	109.5
C8	C9	H92	111.3	109.4
N7	C8	H8	106.3	109.5
C8	N7	C6	124.3	106.7
C8	N7	HN7	104.8	106.7
O9	C9	H91	112.5	109.5
O9	C9	H92	111.3	109.5
C9	O9	HO9	109.5	106.8
H91	C9	H92	105.4	109.5
C6	N7	HN7	104.8	106.7
N7	C6	C5	114.2	109.5
N7	C6	H61	106.9	109.4
N7	C6	H62	107.9	109.4
C5	C6	H61	106.8	109.5
C5	C6	H62	107.9	109.5
C6	C5	N1	111.2	109.9
C6	C5	C4	111.0	109.9
C6	C5	H5	104.3	109.9
H61	C6	H62	113.2	109.5
N1	C5	C4	98.0	107.3
N1	C5	H5	116.1	109.9
C5	N1	C2	114.4	105.8
C5	N1	HN1	107.9	106.7
C4	C5	H5	116.4	109.9
C5	C4	C3	108.4	104.9
C5	C4	O4	100.6	110.6
C5	C4	H4	115.3	110.3
C2	N1	HN1	107.9	106.7
N1	C2	C3	95.9	103.3
N1	C2	H21	117.0	110.7
N1	C2	H22	114.3	110.7
C3	C2	H21	117.0	110.6
C3	C2	H22	114.3	110.6
C2	C3	O3	116.1	110.8
C2	C3	C4	102.6	102.9
C2	C3	H3	112.4	110.7
H21	C2	H22	99.5	110.7
O3	C3	C4	116.0	110.8
O3	C3	H3	97.8	110.7
C3	O3	HO3	109.5	106.8
C4	C3	H3	112.4	110.8
C3	C4	O4	108.3	110.3
C3	C4	H4	108.4	110.3
O4	C4	H4	115.4	110.3
C4	O4	HO4	109.5	106.8

Torsion Angles for GB1

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C10	C15	C14	H15	180.0	180.5
C14	C15	C10	C11	359.9	359.5
C14	C15	C10	C8	178.8	179.8
C13	C14	C15	H14	180.0	180.2
C15	C14	C13	C12	359.5	359.8
C15	C14	C13	H13	179.5	179.8
C14	C15	C10	H15	180.0	179.5
C10	C15	C14	C13	0.4	0.5
C10	C15	C14	H14	180.4	180.3
C12	C11	C10	C15	0.1	0.3
C15	C10	C11	H11	180.1	180.3
C11	C10	C15	C8	181.1	179.7
C15	C10	C8	C9	238.4	79.7
C15	C10	C8	N7	110.7	319.7
C15	C10	C8	H8	353.4	199.7
C14	C15	H15	C10	180.0	180.5
H15	C15	C14	C13	180.4	180.0
H15	C15	C14	H14	0.4	359.8
H15	C15	C10	C11	179.8	180.0
H15	C15	C10	C8	358.8	0.3
C13	C14	C15	C10	0.4	0.5
C13	C14	C15	H15	180.4	180.0
C15	C14	C13	H14	180.0	179.8
C12	C13	C14	H13	180.0	180.0
C14	C13	C12	C11	0.5	359.9
C14	C13	C12	H12	180.5	180.0
H14	C14	C15	C10	180.4	180.3
H14	C14	C15	H15	0.4	359.8
C15	C14	H14	C13	180.0	180.2
H14	C14	C13	C12	179.5	180.0
H14	C14	C13	H13	359.5	360.0
C12	C13	C14	H14	179.5	180.0
C14	C13	C12	H13	180.0	180.0
C11	C12	C13	H12	180.0	180.0
C13	C12	C11	C10	359.7	0.0
C13	C12	C11	H11	179.7	180.0
H13	C13	C14	H14	359.5	360.0
C14	C13	H13	C12	180.0	180.0
H13	C13	C12	C11	180.5	180.0
H13	C13	C12	H12	0.5	360.0
C15	C10	C11	C12	0.1	0.3
C11	C12	C13	H13	180.5	180.0
C13	C12	C11	H12	180.0	180.0
C10	C11	C12	H11	180.0	180.0
C12	C11	C10	C8	181.1	180.0
H12	C12	C13	H13	0.5	360.0
C13	C12	H12	C11	180.0	180.0
H12	C12	C11	C10	179.7	180.0
H12	C12	C11	H11	359.7	360.0
C11	C10	C15	H15	179.8	180.0
C15	C10	C11	C8	179.0	180.3
C10	C11	C12	H12	179.7	180.0
C12	C11	C10	H11	180.0	180.0
C11	C10	C8	C9	57.3	260.0
C11	C10	C8	N7	289.6	140.0
C11	C10	C8	H8	172.3	20.0
H11	C11	C12	H12	359.7	360.0
C12	C11	H11	C10	180.0	180.0
H11	C11	C10	C8	1.1	360.0
C8	C10	C15	H15	358.8	0.3
C15	C10	C8	C11	181.1	179.7
C8	C10	C11	H11	1.1	360.0
C9	C8	C10	N7	127.7	120.0
C9	C8	C10	H8	245.1	240.0
C10	C8	C9	O9	175.6	305.0
C10	C8	C9	H91	53.6	185.0
C10	C8	C9	H92	295.6	65.0
N7	C8	C10	H8	117.3	120.0
C10	C8	N7	C6	299.0	205.0
C10	C8	N7	HN7	59.0	318.8
C10	C8	C9	N7	241.7	240.0
C10	C8	C9	H8	125.0	120.0
N7	C8	C9	H8	243.3	240.0
C9	C8	N7	C6	178.6	85.0
C9	C8	N7	HN7	298.6	198.8
O9	C9	C8	H91	122.0	120.0
O9	C9	C8	H92	240.0	240.0
C8	C9	O9	HO9	4.3	180.0
H91	C9	C8	H92	118.0	120.0
C10	C8	N7	C9	120.4	120.0
C10	C8	N7	H8	234.9	240.0
C9	C8	N7	H8	114.5	120.0
N7	C8	C9	O9	293.9	65.0
N7	C8	C9	H91	171.9	305.0
N7	C8	C9	H92	53.9	185.0
C6	N7	C8	HN7	240.0	246.2
C8	N7	C6	C5	193.9	180.0
C8	N7	C6	H61	76.0	300.0
C8	N7	C6	H62	313.9	60.0
C10	C8	H8	C9	241.8	240.0
C10	C8	H8	N7	116.0	120.0
C9	C8	H8	N7	234.2	240.0
H8	C8	C9	O9	50.7	185.0
H8	C8	C9	H91	288.7	65.0
H8	C8	C9	H92	170.7	305.0
H8	C8	N7	C6	64.1	325.0
H8	C8	N7	HN7	184.1	78.8
O9	C9	C8	N7	293.9	65.0
O9	C9	C8	H8	50.7	185.0
C8	C9	O9	H91	238.0	240.0
C8	C9	O9	H92	120.0	120.0
H91	C9	O9	H92	242.0	239.9
H91	C9	C8	N7	171.9	305.0
H91	C9	C8	H8	288.7	65.0
C8	C9	H91	O9	117.1	120.0
C8	C9	H91	H92	238.5	240.0
O9	C9	H91	H92	121.5	120.0
H91	C9	O9	HO9	126.3	300.0
H92	C9	C8	N7	53.9	185.0
H92	C9	C8	H8	170.7	305.0
C8	C9	H92	O9	244.4	240.0
C8	C9	H92	H91	122.2	120.0
O9	C9	H92	H91	237.8	240.0
H92	C9	O9	HO9	244.3	60.1
HO9	O9	C9	H91	126.3	300.0
HO9	O9	C9	H92	244.3	60.1
C6	N7	C8	H8	64.1	325.0
C8	N7	C6	HN7	120.0	113.8
C5	C6	N7	H61	117.9	240.0
C5	C6	N7	H62	240.0	120.0
N7	C6	C5	N1	165.1	56.8
N7	C6	C5	C4	273.2	174.6
N7	C6	C5	H5	39.2	295.7
H61	C6	N7	H62	122.1	240.0
HN7	N7	C8	H8	184.1	78.8
C8	N7	HN7	C6	227.8	246.2
HN7	N7	C6	C5	73.9	66.2
HN7	N7	C6	H61	316.0	186.2
HN7	N7	C6	H62	193.9	306.2
C5	C6	N7	HN7	73.9	66.2
N7	C6	C5	H61	242.1	120.0
N7	C6	C5	H62	120.0	240.0
H61	C6	C5	H62	237.9	120.0
N1	C5	C6	C4	252.0	242.2
N1	C5	C6	H5	125.9	121.1
C6	C5	N1	C2	91.2	144.7
C6	C5	N1	HN1	211.2	258.1
C4	C5	C6	H5	234.0	238.9
C6	C5	C4	C3	238.1	239.4
C6	C5	C4	O4	124.6	120.5
C6	C5	C4	H4	359.8	358.2
H61	C6	N7	HN7	316.0	186.2
N7	C6	H61	C5	122.6	240.0
N7	C6	H61	H62	241.3	120.0
C5	C6	H61	H62	118.7	240.0
H61	C6	C5	N1	283.1	296.8
H61	C6	C5	C4	31.1	54.6
H61	C6	C5	H5	157.1	175.7
H62	C6	N7	HN7	193.9	306.2
N7	C6	H62	C5	236.1	120.0
N7	C6	H62	H61	118.1	240.0
C5	C6	H62	H61	242.0	120.0
H62	C6	C5	N1	45.2	176.8
H62	C6	C5	C4	153.2	294.6
H62	C6	C5	H5	279.2	55.7
N1	C5	C6	H61	283.1	296.8
N1	C5	C6	H62	45.2	176.8
C6	C5	N1	C4	116.3	119.5
C6	C5	N1	H5	240.9	239.0
C4	C5	N1	H5	124.7	119.5
N1	C5	C4	C3	354.5	358.9
N1	C5	C4	O4	241.1	240.0
N1	C5	C4	H4	116.3	117.7
C2	N1	C5	HN1	240.0	246.6
C5	N1	C2	C3	43.8	320.8
C5	N1	C2	H21	279.4	79.2
C5	N1	C2	H22	163.8	202.4
C4	C5	C6	H61	31.1	54.6
C4	C5	C6	H62	153.2	294.6
C6	C5	C4	N1	243.5	240.5
C6	C5	C4	H5	119.0	121.1
N1	C5	C4	H5	235.5	240.5
C4	C5	N1	C2	334.9	25.2
C4	C5	N1	HN1	95.0	138.6
C2	C3	C4	C5	31.2	338.0
O3	C3	C4	C5	263.6	219.5
C5	C4	C3	H3	152.1	96.3
C3	C4	C5	O4	113.4	118.9
C3	C4	C5	H4	238.3	241.2
O4	C4	C5	H4	124.8	122.3
C5	C4	O4	HO4	104.3	177.1
H5	C5	C6	H61	157.1	175.7
H5	C5	C6	H62	279.2	55.7
C6	C5	H5	N1	122.8	121.1
C6	C5	H5	C4	237.4	238.9
N1	C5	H5	C4	114.6	117.8
H5	C5	N1	C2	210.3	265.7
H5	C5	N1	HN1	330.3	19.1
H5	C5	C4	C3	119.0	118.4
H5	C5	C4	O4	5.6	359.5
H5	C5	C4	H4	240.8	237.2
C2	N1	C5	C4	334.9	25.2
C2	N1	C5	H5	210.3	265.7
C5	N1	C2	HN1	120.0	113.4
C3	C2	N1	H21	124.3	241.6
C3	C2	N1	H22	240.0	118.4
N1	C2	C3	O3	85.7	155.9
N1	C2	C3	C4	318.1	37.5
N1	C2	C3	H3	197.1	279.1
H21	C2	N1	H22	115.7	236.9
HN1	N1	C5	C4	95.0	138.6
HN1	N1	C5	H5	330.3	19.1
C5	N1	HN1	C2	235.9	247.3
HN1	N1	C2	C3	283.7	207.4
HN1	N1	C2	H21	159.4	325.9
HN1	N1	C2	H22	43.7	89.0
C5	C4	C3	C2	31.2	338.0
C3	C2	N1	HN1	283.7	207.4
N1	C2	C3	H21	235.7	118.5
N1	C2	C3	H22	120.0	241.5
H21	C2	C3	H22	244.3	123.1
O3	C3	C2	C4	127.6	118.5
O3	C3	C2	H3	248.6	236.9
C2	C3	O3	HO3	14.5	61.5
C4	C3	C2	H3	121.0	118.4
C2	C3	C4	O4	139.4	97.1
C2	C3	C4	H4	265.3	219.1
H21	C2	N1	HN1	159.4	325.9
N1	C2	H21	C3	112.8	246.1
N1	C2	H21	H22	236.4	123.1
C3	C2	H21	H22	123.6	237.0
H21	C2	C3	O3	210.0	37.5
H21	C2	C3	C4	82.4	279.0
H21	C2	C3	H3	321.4	160.6
H22	C2	N1	HN1	43.7	89.0
N1	C2	H22	C3	250.9	113.9
N1	C2	H22	H21	125.5	236.9
C3	C2	H22	H21	234.5	123.0
H22	C2	C3	O3	325.7	274.4
H22	C2	C3	C4	198.1	155.9
H22	C2	C3	H3	77.1	37.5
C5	C4	C3	O3	263.6	219.5
O3	C3	C2	H21	210.0	37.5
O3	C3	C2	H22	325.7	274.4
C2	C3	O3	C4	239.4	246.5
C2	C3	O3	H3	119.7	123.2
C4	C3	O3	H3	240.3	236.7
O3	C3	C4	O4	11.8	338.6
O3	C3	C4	H4	137.7	100.7
C3	C4	C5	H5	119.0	118.4
C5	C4	C3	O4	251.8	240.9
C5	C4	C3	H4	125.9	118.8
C4	C3	C2	H21	82.4	279.0
C4	C3	C2	H22	198.1	155.9
C2	C3	C4	O3	127.6	118.4
C2	C3	C4	H3	239.0	241.6
O3	C3	C4	H3	111.4	123.2
C4	C3	O3	HO3	135.1	175.0
O4	C4	C3	H4	234.1	238.0
C3	C4	O4	HO4	350.8	61.4
H3	C3	C2	H21	321.4	160.6
H3	C3	C2	H22	77.1	37.5
C2	C3	H3	O3	237.6	236.8
C2	C3	H3	C4	115.2	113.5
O3	C3	H3	C4	237.6	236.7
H3	C3	O3	HO3	254.8	298.3
H3	C3	C4	O4	260.4	215.4
H3	C3	C4	H4	26.3	337.5
HO3	O3	C3	C4	135.1	175.0
HO3	O3	C3	H3	254.8	298.3
O4	C4	C5	H5	5.6	359.5
C5	C4	O4	C3	113.5	115.6
C5	C4	O4	H4	235.2	237.7
O4	C4	C3	H3	260.4	215.4
C3	C4	O4	H4	121.7	122.1
H4	C4	C5	H5	240.8	237.2
C5	C4	H4	C3	238.3	244.5
C5	C4	H4	O4	116.7	122.5
H4	C4	C3	H3	26.3	337.5
C3	C4	H4	O4	238.4	238.0
H4	C4	O4	HO4	229.1	299.4
HO4	O4	C4	H4	229.1	299.4