PDB Chemical Component GAO

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GAO

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
OP3 P 1.615 1.610
OP3 HOP3 0.951 0.966
P OP1 1.478 1.479
P OP2 1.482 1.609
P O5' 1.609 1.610
OP2 HOP2 0.950 0.967
O5' C5' 1.445 1.427
C5' C4' 1.517 1.530
C5' H5' 1.115 1.091
C5' H5'' 1.115 1.090
C4' O4' 1.431 1.444
C4' C3' 1.519 1.544
C4' H4' 1.115 1.090
O4' C1' 1.433 1.443
C3' O3' 1.437 1.429
C3' C2' 1.506 1.546
C3' H3' 1.115 1.090
O3' HO3' 0.951 0.967
C2' O2' 1.437 1.429
C2' C1' 1.520 1.544
C2' H2' 1.115 1.090
O2' HO2' 0.950 0.967
C1' N9 1.469 1.465
C1' H1' 1.114 1.090
N9 C8 1.349 1.365
N9 C4 1.368 1.368
C8 N7 1.290 1.301
C8 H8 1.103 1.080
N7 C5 1.401 1.355
C5 C6 1.421 1.414
C5 C4 1.386 1.399
C6 O6 1.227 1.220
C6 N1 1.382 1.351
N1 C2 1.374 1.362
N1 H1 1.021 0.970
C2 N2 1.318 1.372
C2 N3 1.323 1.315
N2 H21 1.020 0.971
N2 H22 1.019 0.970
N3 C4 1.348 1.338

Bond Angles for GAO

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
P OP3 HOP3 108.2 106.8
OP3 P OP1 108.2 109.5
OP3 P OP2 108.5 109.4
OP3 P O5' 102.7 109.5
OP1 P OP2 119.8 109.5
OP1 P O5' 108.2 109.5
OP2 P O5' 108.1 109.5
P OP2 HOP2 108.5 106.8
P O5' C5' 121.2 106.8
O5' C5' C4' 112.1 109.5
O5' C5' H5' 111.2 109.5
O5' C5' H5'' 111.2 109.5
C4' C5' H5' 111.2 109.5
C4' C5' H5'' 111.2 109.5
C5' C4' O4' 111.1 110.4
C5' C4' C3' 111.2 110.5
C5' C4' H4' 106.4 110.3
H5' C5' H5'' 99.2 109.4
O4' C4' C3' 107.0 104.8
O4' C4' H4' 110.7 110.4
C4' O4' C1' 107.8 105.3
C3' C4' H4' 110.5 110.3
C4' C3' O3' 111.0 110.5
C4' C3' C2' 105.3 104.1
C4' C3' H3' 112.0 110.5
O4' C1' C2' 107.1 104.9
O4' C1' N9 111.0 110.4
O4' C1' H1' 110.8 110.4
O3' C3' C2' 111.5 110.6
O3' C3' H3' 105.8 110.4
C3' O3' HO3' 110.9 106.8
C2' C3' H3' 111.4 110.6
C3' C2' O2' 110.6 110.5
C3' C2' C1' 105.5 104.0
C3' C2' H2' 112.2 110.5
O2' C2' C1' 111.8 110.6
O2' C2' H2' 105.9 110.5
C2' O2' HO2' 110.7 106.8
C1' C2' H2' 111.0 110.7
C2' C1' N9 111.6 110.4
C2' C1' H1' 110.2 110.4
N9 C1' H1' 106.2 110.3
C1' N9 C8 129.4 126.3
C1' N9 C4 126.5 126.3
C8 N9 C4 104.1 107.5
N9 C8 N7 117.8 109.8
N9 C8 H8 123.3 125.0
N9 C4 C5 106.3 106.1
N9 C4 N3 125.7 134.2
N7 C8 H8 119.0 125.2
C8 N7 C5 101.4 109.3
N7 C5 C6 130.3 134.1
N7 C5 C4 110.5 107.3
C6 C5 C4 119.2 118.6
C5 C6 O6 129.1 120.8
C5 C6 N1 111.3 118.4
C5 C4 N3 128.1 119.7
O6 C6 N1 119.7 120.8
C6 N1 C2 125.5 120.3
C6 N1 H1 117.5 119.8
C2 N1 H1 117.0 119.9
N1 C2 N2 116.5 119.0
N1 C2 N3 124.0 121.9
N2 C2 N3 119.5 119.0
C2 N2 H21 116.5 120.1
C2 N2 H22 109.6 120.0
C2 N3 C4 112.0 121.1
H21 N2 H22 109.7 119.9

Torsion Angles for GAO

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP3 OP2 131.4 240.0
OP1 P OP3 O5' 245.7 120.0
OP2 P OP3 O5' 114.2 240.0
OP3 P OP2 HOP2 180.0 60.0
OP3 P O5' C5' 291.9 180.0
HOP3 OP3 P OP1 180.0 300.0
HOP3 OP3 P OP2 48.5 60.0
HOP3 OP3 P O5' 294.3 180.0
OP1 P OP3 HOP3 180.0 300.0
OP3 P OP1 OP2 235.0 119.9
OP3 P OP1 O5' 110.6 240.0
OP2 P OP1 O5' 235.6 120.1
OP1 P OP2 HOP2 55.1 180.0
OP1 P O5' C5' 46.2 60.0
OP2 P OP3 HOP3 48.5 60.0
OP3 P OP2 OP1 124.8 240.0
OP3 P OP2 O5' 249.3 120.0
OP1 P OP2 O5' 124.5 239.9
OP2 P O5' C5' 177.3 300.0
O5' P OP3 HOP3 294.3 180.0
OP3 P O5' OP1 245.7 120.0
OP3 P O5' OP2 114.6 240.1
OP1 P O5' OP2 228.9 120.1
O5' P OP2 HOP2 290.7 300.0
P O5' C5' C4' 157.8 180.0
P O5' C5' H5' 283.1 60.0
P O5' C5' H5'' 32.6 300.0
HOP2 OP2 P O5' 290.7 300.0
C4' C5' O5' H5' 234.8 120.0
C4' C5' O5' H5'' 125.2 240.0
O5' C5' C4' O4' 304.2 61.5
O5' C5' C4' C3' 63.2 176.9
O5' C5' C4' H4' 183.6 299.2
H5' C5' O5' H5'' 250.5 120.0
O5' C5' C4' H5' 125.2 240.0
O5' C5' C4' H5'' 234.8 120.1
H5' C5' C4' H5'' 109.5 240.1
O4' C4' C5' C3' 241.0 244.5
O4' C4' C5' H4' 120.5 122.3
C5' C4' O4' C1' 149.0 159.5
C3' C4' C5' H4' 239.6 237.7
C5' C4' C3' O3' 100.1 98.3
C5' C4' C3' C2' 221.0 217.0
C5' C4' C3' H3' 342.2 335.8
O5' C5' H5' C4' 234.3 120.0
O5' C5' H5' H5'' 117.2 240.0
C4' C5' H5' H5'' 242.9 120.0
H5' C5' C4' O4' 178.9 181.5
H5' C5' C4' C3' 298.0 296.9
H5' C5' C4' H4' 58.4 59.2
O5' C5' H5'' C4' 125.7 240.0
O5' C5' H5'' H5' 242.9 120.0
C4' C5' H5'' H5' 117.1 240.0
H5'' C5' C4' O4' 69.4 301.4
H5'' C5' C4' C3' 188.4 56.9
H5'' C5' C4' H4' 308.9 179.1
O4' C4' C5' H5' 178.9 181.5
O4' C4' C5' H5'' 69.4 301.4
C5' C4' O4' C3' 121.6 119.0
C5' C4' O4' H4' 242.0 237.8
C3' C4' O4' H4' 120.4 118.8
O4' C4' C3' O3' 221.6 217.2
O4' C4' C3' C2' 342.4 335.9
O4' C4' C3' H3' 103.6 94.7
C4' O4' C1' C2' 333.8 319.6
C4' O4' C1' N9 211.7 200.6
C4' O4' C1' H1' 94.0 78.5
C3' C4' C5' H5' 298.0 296.9
C3' C4' C5' H5'' 188.4 56.9
C5' C4' C3' O4' 238.6 241.1
C5' C4' C3' H4' 118.0 122.3
O4' C4' C3' H4' 239.4 241.2
C3' C4' O4' C1' 27.5 40.5
O3' C3' C4' C2' 239.2 241.3
O3' C3' C4' H3' 118.0 122.5
C4' C3' O3' HO3' 180.0 179.9
C2' C3' C4' H3' 238.8 241.2
C4' C3' C2' O2' 122.9 118.8
C4' C3' C2' C1' 1.9 0.2
C4' C3' C2' H2' 240.9 241.3
H4' C4' C5' H5' 58.4 59.2
H4' C4' C5' H5'' 308.9 179.1
C5' C4' H4' O4' 120.8 122.3
C5' C4' H4' C3' 239.1 237.6
O4' C4' H4' C3' 118.3 115.4
H4' C4' O4' C1' 267.0 281.7
H4' C4' C3' O3' 342.1 336.1
H4' C4' C3' C2' 103.0 94.8
H4' C4' C3' H3' 224.2 213.5
C1' O4' C4' C3' 27.5 40.5
C1' O4' C4' H4' 267.0 281.7
C3' C2' C1' O4' 14.5 23.8
O2' C2' C1' O4' 254.2 265.3
O4' C1' C2' H2' 136.2 142.5
C2' C1' O4' N9 122.0 118.9
C2' C1' O4' H1' 239.8 241.1
N9 C1' O4' H1' 117.8 122.2
O4' C1' N9 C8 56.7 27.1
O4' C1' N9 C4 237.6 207.0
O3' C3' C4' H4' 342.1 336.1
C4' C3' O3' C2' 117.1 114.7
C4' C3' O3' H3' 238.3 237.4
C2' C3' O3' H3' 121.2 122.7
O3' C3' C2' O2' 243.3 237.5
O3' C3' C2' C1' 122.3 118.8
O3' C3' C2' H2' 1.3 0.0
C2' C3' C4' H4' 103.0 94.8
C4' C3' C2' O3' 239.6 241.3
C4' C3' C2' H3' 121.6 118.7
O4' C1' C2' C3' 14.5 23.8
O3' C3' C2' H3' 242.1 237.4
C2' C3' O3' HO3' 62.9 65.3
O2' C2' C3' C1' 121.0 118.6
O2' C2' C3' H2' 242.0 237.4
C3' C2' O2' HO2' 180.0 61.4
C1' C2' C3' H2' 121.0 118.8
C3' C2' C1' N9 136.1 142.8
C3' C2' C1' H1' 253.9 264.9
H3' C3' C4' H4' 224.2 213.5
C4' C3' H3' O3' 121.0 122.6
C4' C3' H3' C2' 242.3 245.3
O3' C3' H3' C2' 121.3 122.7
H3' C3' O3' HO3' 301.7 302.5
H3' C3' C2' O2' 1.3 0.1
H3' C3' C2' C1' 240.2 241.5
H3' C3' C2' H2' 119.3 122.6
HO3' O3' C3' C2' 62.9 65.3
HO3' O3' C3' H3' 301.7 302.5
O4' C1' C2' O2' 254.2 265.3
O2' C2' C3' H3' 1.3 0.1
C3' C2' O2' C1' 242.8 245.4
C3' C2' O2' H2' 121.7 122.6
C1' C2' O2' H2' 239.0 237.1
O2' C2' C1' N9 15.9 24.2
O2' C2' C1' H1' 133.6 146.3
O4' C1' C2' N9 238.3 241.1
O4' C1' C2' H1' 120.6 118.9
C1' C2' C3' H3' 240.2 241.5
C3' C2' C1' O2' 120.3 118.6
C3' C2' C1' H2' 238.3 241.3
O2' C2' C1' H2' 118.0 122.7
C1' C2' O2' HO2' 297.2 176.0
N9 C1' C2' H1' 242.3 237.8
C2' C1' N9 C8 297.3 271.5
C2' C1' N9 C4 118.2 91.5
H2' C2' C3' H3' 119.3 122.6
C3' C2' H2' O2' 239.2 237.4
C3' C2' H2' C1' 117.7 114.6
O2' C2' H2' C1' 238.5 237.2
H2' C2' O2' HO2' 58.3 298.9
H2' C2' C1' N9 257.9 261.4
H2' C2' C1' H1' 15.6 23.6
HO2' O2' C2' C1' 297.2 176.0
HO2' O2' C2' H2' 58.3 298.9
O4' C1' N9 C2' 119.4 115.6
O4' C1' N9 H1' 239.5 237.8
N9 C1' C2' H2' 257.9 261.4
C2' C1' N9 H1' 120.1 122.2
C8 N9 C1' C4 179.1 180.1
C1' N9 C8 N7 180.9 180.0
C1' N9 C8 H8 1.0 360.0
C1' N9 C4 C5 179.2 180.0
C1' N9 C4 N3 359.1 0.1
O4' C1' H1' C2' 241.7 244.5
O4' C1' H1' N9 120.7 122.2
H1' C1' C2' H2' 15.6 23.6
C2' C1' H1' N9 239.0 237.8
H1' C1' N9 C8 177.2 149.3
H1' C1' N9 C4 358.1 329.2
C8 N9 C1' H1' 177.2 149.3
C1' N9 C8 C4 180.8 180.0
C8 N9 C4 C5 359.9 359.9
C8 N9 C4 N3 179.8 180.0
N7 C8 N9 H8 180.0 180.1
N9 C8 N7 C5 359.9 359.9
C4 N9 C1' H1' 358.1 329.2
C1' N9 C4 C8 179.3 180.0
C4 N9 C8 N7 0.2 0.1
C4 N9 C8 H8 180.2 180.0
N7 C5 C4 N9 0.0 0.0
C6 C5 C4 N9 180.0 180.0
C5 C4 N9 N3 180.1 179.9
C2 N3 C4 N9 180.0 179.9
N7 C8 N9 C4 0.2 0.1
N9 C8 N7 H8 180.0 179.9
C8 N7 C5 C6 180.1 180.0
C8 N7 C5 C4 0.1 0.0
H8 C8 N9 C4 180.2 180.0
N9 C8 H8 N7 180.0 180.1
H8 C8 N7 C5 179.8 180.0
N9 C4 C5 N7 0.0 0.0
C5 N7 C8 H8 179.8 180.0
C6 C5 N7 C4 180.0 180.0
N7 C5 C6 O6 0.7 0.0
N7 C5 C6 N1 180.0 179.7
N7 C5 C4 N3 180.1 180.0
N9 C4 C5 C6 180.0 180.0
N7 C5 C6 C4 180.0 180.0
C6 C5 C4 N3 0.1 359.9
O6 C6 C5 N1 180.7 180.3
C5 C6 N1 C2 359.9 0.6
C5 C6 N1 H1 179.9 180.0
N9 C4 C5 N3 179.9 180.1
N7 C5 C4 C6 180.0 180.0
C4 C5 C6 O6 180.7 180.0
C4 C5 C6 N1 360.0 359.7
C2 N3 C4 C5 360.0 0.0
O6 C6 C5 C4 180.7 180.0
C5 C6 O6 N1 179.3 179.7
O6 C6 N1 C2 179.3 180.3
O6 C6 N1 H1 359.3 359.7
N1 C6 C5 C4 360.0 359.7
C5 C6 N1 O6 180.6 180.3
C2 N1 C6 H1 180.0 180.6
C6 N1 C2 N2 180.4 179.7
C6 N1 C2 N3 0.2 359.4
C6 N1 C2 H1 180.0 179.4
N2 C2 N1 N3 180.2 180.3
N1 C2 N2 H21 179.9 179.8
N1 C2 N2 H22 54.7 359.4
N1 C2 N3 C4 359.9 0.3
C6 N1 H1 C2 180.0 180.6
H1 N1 C2 N2 0.4 0.3
H1 N1 C2 N3 180.2 179.9
N2 C2 N1 H1 0.4 0.3
N1 C2 N2 N3 179.8 179.7
N2 C2 N3 C4 179.7 180.0
H21 N2 C2 H22 125.2 180.3
N9 C4 N3 C2 180.0 179.9
C5 C4 N3 C2 360.0 0.0
N3 C2 N1 H1 180.2 179.9
N1 C2 N3 N2 180.2 180.3
N3 C2 N2 H21 0.1 0.1
N3 C2 N2 H22 234.9 179.7
H21 N2 C2 N3 0.1 0.1
C2 N2 H21 H22 234.8 179.7
H22 N2 C2 N3 234.9 179.7
C2 N2 H22 H21 129.1 180.3
N9 C4 N3 C5 180.1 179.9