PDB Chemical Component GAF

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GAF

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.537	1.531
C1	O5	1.423	1.426
C1	O1	1.436	1.428
C1	H1	1.115	1.089
C2	F2	1.392	1.400
C2	C3	1.511	1.531
C2	H2	1.115	1.090
C3	O3	1.413	1.429
C3	C4	1.536	1.532
C3	H3	1.115	1.090
O3	HO3	0.950	0.968
C4	O4	1.416	1.428
C4	C5	1.543	1.530
C4	H4	1.115	1.091
O4	HO4	0.950	0.966
C5	O5	1.437	1.425
C5	C6	1.541	1.530
C5	H5	1.115	1.089
C6	O6	1.422	1.428
C6	H61	1.115	1.090
C6	H62	1.114	1.090
O6	HO6	0.950	0.967
O1	HO1	0.949	0.967

Bond Angles for GAF

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O5	110.3	109.7
C2	C1	O1	107.7	109.3
C2	C1	H1	111.9	109.4
C1	C2	F2	111.7	109.5
C1	C2	C3	108.2	109.1
C1	C2	H2	109.1	109.5
O5	C1	O1	108.3	109.5
O5	C1	H1	111.9	109.4
C1	O5	C5	115.1	107.6
O1	C1	H1	106.5	109.5
C1	O1	HO1	107.7	106.8
F2	C2	C3	109.4	109.7
F2	C2	H2	109.1	109.5
C3	C2	H2	109.2	109.6
C2	C3	O3	107.4	109.6
C2	C3	C4	111.1	108.6
C2	C3	H3	109.0	109.6
O3	C3	C4	111.2	109.7
O3	C3	H3	109.1	109.6
C3	O3	HO3	107.4	106.8
C4	C3	H3	109.0	109.7
C3	C4	O4	106.4	109.6
C3	C4	C5	108.8	109.0
C3	C4	H4	110.2	109.5
O4	C4	C5	111.0	109.8
O4	C4	H4	110.2	109.5
C4	O4	HO4	106.4	106.8
C5	C4	H4	110.2	109.5
C4	C5	O5	109.2	109.7
C4	C5	C6	115.2	109.4
C4	C5	H5	108.1	109.4
O5	C5	C6	107.9	109.4
O5	C5	H5	108.1	109.5
C6	C5	H5	108.1	109.4
C5	C6	O6	108.1	109.5
C5	C6	H61	112.7	109.5
C5	C6	H62	112.7	109.5
O6	C6	H61	112.7	109.5
O6	C6	H62	112.7	109.5
C6	O6	HO6	108.1	106.9
H61	C6	H62	97.7	109.4

Torsion Angles for GAF

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O5	C1	C2	O1	118.0	120.1
O5	C1	C2	H1	234.7	239.9
C2	C1	O5	C5	299.6	292.4
O1	C1	C2	H1	116.7	119.9
C2	C1	O1	HO1	180.0	180.3
F2	C2	C1	C3	120.5	120.0
F2	C2	C1	H2	239.2	239.9
C3	C2	C1	H2	118.7	119.9
C1	C2	C3	O3	181.5	186.4
C1	C2	C3	C4	303.3	306.2
C1	C2	C3	H3	63.5	66.0
C2	C1	O5	O1	242.4	240.0
C2	C1	O5	H1	125.2	120.1
O5	C1	C2	F2	177.1	181.3
O5	C1	C2	C3	56.6	61.2
O5	C1	C2	H2	297.9	301.3
O1	C1	O5	H1	242.9	240.1
O5	C1	O1	HO1	60.7	60.1
C4	C5	O5	C1	59.5	67.7
C1	O5	C5	C6	185.4	187.8
C1	O5	C5	H5	302.1	307.7
C2	C1	O1	O5	119.3	120.2
C2	C1	O1	H1	239.9	240.1
O1	C1	C2	F2	59.1	61.2
O1	C1	C2	C3	298.6	301.2
O1	C1	C2	H2	179.9	181.3
O5	C1	O1	H1	120.5	119.9
O1	C1	O5	C5	57.2	52.4
C2	C1	H1	O5	235.6	239.7
C2	C1	H1	O1	117.4	119.8
H1	C1	C2	F2	302.4	301.3
H1	C1	C2	C3	181.9	181.3
H1	C1	C2	H2	63.2	61.4
O5	C1	H1	O1	241.8	240.1
H1	C1	O5	C5	174.4	172.3
H1	C1	O1	HO1	300.2	300.2
F2	C2	C1	O5	177.1	181.3
F2	C2	C1	O1	59.1	61.2
F2	C2	C1	H1	302.4	301.3
C1	C2	F2	C3	240.2	240.4
C1	C2	F2	H2	120.8	120.1
C3	C2	F2	H2	240.6	239.7
F2	C2	C3	O3	59.6	66.4
F2	C2	C3	C4	181.3	186.3
F2	C2	C3	H3	301.6	306.1
C3	C2	C1	O5	56.6	61.2
C3	C2	C1	O1	298.6	301.2
C3	C2	C1	H1	181.9	181.3
C1	C2	C3	F2	121.9	119.9
C1	C2	C3	H2	241.3	240.1
F2	C2	C3	H2	119.4	120.2
O3	C3	C2	C4	238.2	240.1
O3	C3	C2	H3	118.0	120.3
C2	C3	O3	HO3	180.0	300.1
C4	C3	C2	H3	239.8	240.2
C2	C3	C4	O4	297.1	293.7
C2	C3	C4	C5	56.8	53.8
C2	C3	C4	H4	177.6	173.6
H2	C2	C1	O5	297.9	301.3
H2	C2	C1	O1	179.9	181.3
H2	C2	C1	H1	63.2	61.4
C1	C2	H2	F2	237.7	239.9
C1	C2	H2	C3	118.1	119.6
F2	C2	H2	C3	240.5	239.7
H2	C2	C3	O3	300.2	306.2
H2	C2	C3	C4	62.0	66.1
H2	C2	C3	H3	182.2	185.9
O3	C3	C2	H2	300.2	306.2
C2	C3	O3	C4	121.7	119.2
C2	C3	O3	H3	242.0	239.7
C4	C3	O3	H3	120.3	120.5
O3	C3	C4	O4	56.6	53.5
O3	C3	C4	C5	176.3	173.7
O3	C3	C4	H4	297.2	293.4
C4	C3	C2	H2	62.0	66.1
C2	C3	C4	O3	240.5	240.2
C2	C3	C4	H3	120.2	119.7
O3	C3	C4	H3	239.7	239.6
C4	C3	O3	HO3	58.3	180.9
O4	C4	C3	C5	240.3	239.9
O4	C4	C3	H4	119.4	120.1
C3	C4	O4	HO4	180.0	300.0
C5	C4	C3	H4	239.1	240.2
C3	C4	C5	O5	304.7	298.6
C3	C4	C5	C6	183.2	178.5
C3	C4	C5	H5	62.1	58.7
H3	C3	C2	H2	182.2	185.9
C2	C3	H3	O3	117.0	120.4
C2	C3	H3	C4	238.5	240.9
O3	C3	H3	C4	121.6	120.5
H3	C3	O3	HO3	298.0	60.4
H3	C3	C4	O4	176.9	174.0
H3	C3	C4	C5	296.6	294.1
H3	C3	C4	H4	57.4	53.9
HO3	O3	C3	C4	58.3	180.9
HO3	O3	C3	H3	298.0	60.4
O4	C4	C3	H3	176.9	174.0
C3	C4	O4	C5	118.2	119.7
C3	C4	O4	H4	240.6	239.9
C5	C4	O4	H4	122.4	120.2
O4	C4	C5	O5	61.5	58.6
O4	C4	C5	C6	300.0	298.6
O4	C4	C5	H5	178.9	178.7
C1	O5	C5	C4	59.5	67.7
C5	C4	C3	H3	296.6	294.1
C3	C4	C5	O4	243.2	240.0
C3	C4	C5	H4	120.8	119.8
O4	C4	C5	H4	237.6	239.8
C5	C4	O4	HO4	61.8	180.3
O5	C5	C4	C6	121.6	120.1
O5	C5	C4	H5	242.6	239.9
C6	C5	C4	H5	121.0	119.8
C4	C5	C6	O6	85.2	180.1
C4	C5	C6	H61	320.0	60.1
C4	C5	C6	H62	210.5	300.2
H4	C4	C3	H3	57.4	53.9
C3	C4	H4	O4	117.1	120.2
C3	C4	H4	C5	240.0	240.5
O4	C4	H4	C5	122.9	120.3
H4	C4	O4	HO4	299.4	60.1
H4	C4	C5	O5	183.9	178.8
H4	C4	C5	C6	62.3	58.7
H4	C4	C5	H5	301.3	298.9
HO4	O4	C4	C5	61.8	180.3
HO4	O4	C4	H4	299.4	60.1
C5	O5	C1	O1	57.2	52.4
C5	O5	C1	H1	174.4	172.3
O5	C5	C4	H4	183.9	178.8
C4	C5	O5	C6	234.1	239.9
C4	C5	O5	H5	117.4	120.0
C6	C5	O5	H5	243.3	240.1
O5	C5	C6	O6	323.0	59.9
O5	C5	C6	H61	197.7	299.9
O5	C5	C6	H62	88.2	180.0
C6	C5	C4	H4	62.3	58.7
C4	C5	C6	O5	122.3	120.2
C4	C5	C6	H5	239.0	240.2
O5	C5	C6	H5	116.7	120.0
O6	C6	C5	H61	125.3	120.0
O6	C6	C5	H62	234.7	239.9
C5	C6	O6	HO6	180.0	180.0
H61	C6	C5	H62	109.5	119.9
H5	C5	C4	H4	301.3	298.9
C4	C5	H5	O5	241.9	239.8
C4	C5	H5	C6	125.4	119.8
O5	C5	H5	C6	243.5	240.1
H5	C5	C6	O6	206.3	299.9
H5	C5	C6	H61	81.0	179.9
H5	C5	C6	H62	331.5	60.0
O6	C6	C5	H5	206.3	299.9
C5	C6	O6	H61	234.7	240.0
C5	C6	O6	H62	125.3	120.1
H61	C6	O6	H62	250.6	240.1
H61	C6	C5	H5	81.0	179.9
C5	C6	H61	O6	122.7	120.0
C5	C6	H61	H62	241.4	240.0
O6	C6	H61	H62	118.6	120.0
H61	C6	O6	HO6	305.3	300.0
H62	C6	C5	H5	331.5	60.0
C5	C6	H62	O6	237.3	239.9
C5	C6	H62	H61	118.7	120.0
O6	C6	H62	H61	241.4	240.0
H62	C6	O6	HO6	54.7	59.9
HO6	O6	C6	H61	305.3	300.0
HO6	O6	C6	H62	54.7	59.9
HO1	O1	C1	H1	300.2	300.2