PDB Chemical Component GAB
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for GAB
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1' |
O1' |
1.248 |
1.215 |
C1' |
O2' |
1.330 |
1.347 |
C1' |
C1 |
1.459 |
1.477 |
O2' |
HO2' |
0.950 |
0.967 |
C1 |
C2 |
1.523 |
1.394 |
C1 |
C6 |
1.361 |
1.396 |
C2 |
C3 |
1.479 |
1.387 |
C2 |
H2 |
1.080 |
1.080 |
C3 |
C4 |
1.430 |
1.389 |
C3 |
N3 |
1.329 |
1.397 |
C4 |
C5 |
1.367 |
1.382 |
C4 |
H4 |
1.080 |
1.081 |
C5 |
C6 |
1.457 |
1.379 |
C5 |
H5 |
1.080 |
1.080 |
C6 |
H6 |
1.080 |
1.080 |
N3 |
HN31 |
1.000 |
0.970 |
N3 |
HN32 |
1.000 |
0.970 |
Bond Angles for GAB
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1' |
C1' |
O2' |
105.9 |
119.9 |
O1' |
C1' |
C1 |
130.4 |
120.0 |
O2' |
C1' |
C1 |
123.6 |
120.1 |
C1' |
O2' |
HO2' |
109.5 |
120.0 |
C1' |
C1 |
C2 |
119.7 |
120.1 |
C1' |
C1 |
C6 |
120.0 |
120.1 |
C2 |
C1 |
C6 |
120.2 |
119.8 |
C1 |
C2 |
C3 |
114.8 |
119.8 |
C1 |
C2 |
H2 |
122.6 |
120.1 |
C1 |
C6 |
C5 |
120.7 |
120.0 |
C1 |
C6 |
H6 |
119.6 |
120.0 |
C3 |
C2 |
H2 |
122.6 |
120.1 |
C2 |
C3 |
C4 |
121.3 |
120.0 |
C2 |
C3 |
N3 |
118.1 |
120.0 |
C4 |
C3 |
N3 |
120.5 |
120.0 |
C3 |
C4 |
C5 |
119.8 |
120.3 |
C3 |
C4 |
H4 |
120.1 |
119.9 |
C3 |
N3 |
HN31 |
109.5 |
120.0 |
C3 |
N3 |
HN32 |
109.5 |
120.0 |
C5 |
C4 |
H4 |
120.1 |
119.8 |
C4 |
C5 |
C6 |
121.8 |
120.2 |
C4 |
C5 |
H5 |
119.1 |
119.9 |
C6 |
C5 |
H5 |
119.1 |
119.9 |
C5 |
C6 |
H6 |
119.6 |
120.0 |
HN31 |
N3 |
HN32 |
109.5 |
119.9 |
Torsion Angles for GAB
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O2' |
C1' |
O1' |
C1 |
182.6 |
180.0 |
O1' |
C1' |
O2' |
HO2' |
360.0 |
-0.0 |
O1' |
C1' |
C1 |
C2 |
358.3 |
0.2 |
O1' |
C1' |
C1 |
C6 |
180.3 |
180.0 |
O1' |
C1' |
O2' |
C1 |
177.6 |
180.0 |
O2' |
C1' |
C1 |
C2 |
175.3 |
180.2 |
O2' |
C1' |
C1 |
C6 |
357.2 |
360.0 |
O1' |
C1' |
C1 |
O2' |
183.1 |
180.0 |
C1 |
C1' |
O2' |
HO2' |
182.4 |
180.0 |
C2 |
C1 |
C1' |
C6 |
178.0 |
180.2 |
C1' |
C1 |
C2 |
C3 |
168.9 |
180.2 |
C1' |
C1 |
C2 |
H2 |
348.9 |
359.8 |
C1' |
C1 |
C6 |
C5 |
186.2 |
180.0 |
C1' |
C1 |
C6 |
H6 |
6.2 |
360.0 |
HO2' |
O2' |
C1' |
C1 |
182.4 |
180.0 |
C1' |
C1 |
C2 |
C6 |
182.0 |
179.8 |
C2 |
C1 |
C6 |
C5 |
8.2 |
359.8 |
C2 |
C1 |
C6 |
H6 |
188.2 |
179.8 |
C3 |
C2 |
C1 |
H2 |
180.0 |
180.4 |
C1 |
C2 |
C3 |
C4 |
9.0 |
359.6 |
C1 |
C2 |
C3 |
N3 |
185.2 |
179.8 |
C1' |
C1 |
C6 |
C2 |
178.0 |
180.2 |
C6 |
C1 |
C2 |
C3 |
346.9 |
0.4 |
C6 |
C1 |
C2 |
H2 |
166.9 |
180.0 |
C4 |
C5 |
C6 |
C1 |
1.6 |
-0.0 |
C1 |
C6 |
C5 |
H5 |
181.6 |
180.0 |
C5 |
C6 |
C1 |
H6 |
180.0 |
180.0 |
C3 |
C2 |
C1 |
C6 |
346.9 |
0.4 |
C1 |
C2 |
C3 |
H2 |
180.0 |
179.6 |
C4 |
C3 |
C2 |
N3 |
183.7 |
179.9 |
C2 |
C3 |
C4 |
C5 |
0.0 |
0.2 |
C2 |
C3 |
C4 |
H4 |
180.0 |
180.2 |
C2 |
C3 |
N3 |
HN31 |
294.0 |
179.7 |
C2 |
C3 |
N3 |
HN32 |
54.0 |
359.6 |
H2 |
C2 |
C1 |
C6 |
166.9 |
180.0 |
C1 |
C2 |
H2 |
C3 |
180.0 |
180.4 |
H2 |
C2 |
C3 |
C4 |
189.0 |
180.0 |
H2 |
C2 |
C3 |
N3 |
5.3 |
0.1 |
C4 |
C3 |
C2 |
H2 |
189.0 |
180.0 |
C2 |
C3 |
C4 |
N3 |
176.2 |
180.1 |
C4 |
C3 |
N3 |
HN31 |
110.3 |
359.9 |
C4 |
C3 |
N3 |
HN32 |
230.3 |
179.7 |
C5 |
C4 |
C3 |
H4 |
180.0 |
180.0 |
C3 |
C4 |
C5 |
C6 |
354.1 |
360.0 |
C3 |
C4 |
C5 |
H5 |
174.1 |
180.0 |
N3 |
C3 |
C2 |
H2 |
5.3 |
0.1 |
C2 |
C3 |
N3 |
C4 |
183.7 |
179.9 |
N3 |
C3 |
C4 |
C5 |
183.8 |
180.0 |
N3 |
C3 |
C4 |
H4 |
3.8 |
0.0 |
HN31 |
N3 |
C3 |
HN32 |
240.0 |
180.2 |
C1 |
C6 |
C5 |
C4 |
1.6 |
-0.0 |
C5 |
C4 |
C3 |
N3 |
183.8 |
180.0 |
C3 |
C4 |
C5 |
H4 |
180.0 |
180.0 |
C6 |
C5 |
C4 |
H5 |
180.0 |
180.0 |
C4 |
C5 |
C6 |
H6 |
181.6 |
180.0 |
H4 |
C4 |
C3 |
N3 |
3.8 |
0.0 |
C3 |
C4 |
H4 |
C5 |
180.0 |
180.0 |
H4 |
C4 |
C5 |
C6 |
174.1 |
180.0 |
H4 |
C4 |
C5 |
H5 |
354.1 |
360.0 |
C1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
C6 |
C5 |
C4 |
H4 |
174.1 |
180.0 |
C4 |
C5 |
C6 |
H5 |
180.0 |
180.0 |
H5 |
C5 |
C4 |
H4 |
354.1 |
360.0 |
C4 |
C5 |
H5 |
C6 |
180.0 |
180.0 |
H5 |
C5 |
C6 |
H6 |
1.7 |
-0.0 |
C1 |
C6 |
H6 |
C5 |
180.0 |
180.0 |
H6 |
C6 |
C5 |
H5 |
1.7 |
-0.0 |
C3 |
N3 |
HN31 |
HN32 |
120.0 |
179.8 |
C3 |
N3 |
HN32 |
HN31 |
240.0 |
180.2 |