PDB Chemical Component GA2
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for GA2
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N1 |
C2 |
1.419 |
1.363 |
N1 |
C6 |
1.464 |
1.351 |
N1 |
HN1 |
1.020 |
0.970 |
C2 |
N3 |
1.319 |
1.314 |
C2 |
N2 |
1.327 |
1.372 |
C4 |
N9 |
1.332 |
1.368 |
C4 |
N3 |
1.347 |
1.337 |
C4 |
C5 |
1.380 |
1.398 |
C8 |
N9 |
1.389 |
1.365 |
C8 |
N7 |
1.317 |
1.301 |
C8 |
H8 |
1.103 |
1.079 |
C4' |
O4' |
1.451 |
1.428 |
C4' |
C2' |
1.509 |
1.529 |
C4' |
H4'1 |
1.116 |
1.090 |
C4' |
H4'2 |
1.114 |
1.089 |
O4' |
HO4' |
0.951 |
0.967 |
C3' |
O3' |
1.464 |
1.429 |
C3' |
C2' |
1.601 |
1.529 |
C3' |
H3'1 |
1.114 |
1.091 |
C3' |
H3'2 |
1.115 |
1.089 |
O3' |
HO3' |
0.949 |
0.967 |
C2' |
O1' |
1.410 |
1.428 |
C2' |
H2' |
1.114 |
1.090 |
O1' |
C1' |
1.400 |
1.429 |
C1' |
N9 |
1.458 |
1.464 |
C1' |
H1'1 |
1.115 |
1.089 |
C1' |
H1'2 |
1.116 |
1.090 |
N2 |
HN21 |
1.020 |
0.971 |
N2 |
HN22 |
1.019 |
0.970 |
C6 |
O6 |
1.269 |
1.220 |
C6 |
C5 |
1.467 |
1.414 |
C5 |
N7 |
1.428 |
1.355 |
Bond Angles for GA2
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
N1 |
C6 |
124.7 |
120.3 |
C2 |
N1 |
HN1 |
115.9 |
119.9 |
N1 |
C2 |
N3 |
124.2 |
122.0 |
N1 |
C2 |
N2 |
123.4 |
119.0 |
C6 |
N1 |
HN1 |
119.4 |
119.8 |
N1 |
C6 |
O6 |
124.1 |
120.8 |
N1 |
C6 |
C5 |
108.6 |
118.4 |
N3 |
C2 |
N2 |
112.4 |
119.0 |
C2 |
N3 |
C4 |
112.2 |
121.1 |
C2 |
N2 |
HN21 |
123.4 |
120.0 |
C2 |
N2 |
HN22 |
107.3 |
120.0 |
N9 |
C4 |
N3 |
120.9 |
134.2 |
N9 |
C4 |
C5 |
108.5 |
106.1 |
C4 |
N9 |
C8 |
104.6 |
107.5 |
C4 |
N9 |
C1' |
121.8 |
126.3 |
N3 |
C4 |
C5 |
130.5 |
119.7 |
C4 |
C5 |
C6 |
119.8 |
118.6 |
C4 |
C5 |
N7 |
109.9 |
107.3 |
N9 |
C8 |
N7 |
115.7 |
109.8 |
N9 |
C8 |
H8 |
124.5 |
125.1 |
C8 |
N9 |
C1' |
133.6 |
126.2 |
N7 |
C8 |
H8 |
119.7 |
125.1 |
C8 |
N7 |
C5 |
101.2 |
109.3 |
O4' |
C4' |
C2' |
106.8 |
109.5 |
O4' |
C4' |
H4'1 |
113.2 |
109.4 |
O4' |
C4' |
H4'2 |
113.2 |
109.5 |
C4' |
O4' |
HO4' |
106.8 |
106.8 |
C2' |
C4' |
H4'1 |
113.3 |
109.5 |
C2' |
C4' |
H4'2 |
113.2 |
109.5 |
C4' |
C2' |
C3' |
118.2 |
109.5 |
C4' |
C2' |
O1' |
110.4 |
109.5 |
C4' |
C2' |
H2' |
101.1 |
109.5 |
H4'1 |
C4' |
H4'2 |
97.2 |
109.4 |
O3' |
C3' |
C2' |
116.4 |
109.5 |
O3' |
C3' |
H3'1 |
109.7 |
109.5 |
O3' |
C3' |
H3'2 |
109.7 |
109.4 |
C3' |
O3' |
HO3' |
116.3 |
106.8 |
C2' |
C3' |
H3'1 |
109.7 |
109.5 |
C2' |
C3' |
H3'2 |
109.7 |
109.5 |
C3' |
C2' |
O1' |
104.6 |
109.5 |
C3' |
C2' |
H2' |
107.4 |
109.5 |
H3'1 |
C3' |
H3'2 |
100.5 |
109.4 |
O1' |
C2' |
H2' |
115.6 |
109.4 |
C2' |
O1' |
C1' |
105.9 |
106.9 |
O1' |
C1' |
N9 |
100.5 |
109.5 |
O1' |
C1' |
H1'1 |
115.7 |
109.5 |
O1' |
C1' |
H1'2 |
115.6 |
109.4 |
N9 |
C1' |
H1'1 |
115.7 |
109.5 |
N9 |
C1' |
H1'2 |
115.7 |
109.5 |
H1'1 |
C1' |
H1'2 |
94.8 |
109.4 |
HN21 |
N2 |
HN22 |
107.3 |
119.9 |
O6 |
C6 |
C5 |
127.3 |
120.9 |
C6 |
C5 |
N7 |
130.3 |
134.1 |
Torsion Angles for GA2
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C6 |
N1 |
C2 |
HN1 |
180.0 |
179.5 |
C2 |
N1 |
C6 |
O6 |
180.0 |
180.2 |
C2 |
N1 |
C6 |
C5 |
0.4 |
0.5 |
N3 |
C2 |
N1 |
N2 |
179.6 |
179.8 |
N1 |
C2 |
N3 |
C4 |
358.2 |
0.2 |
N1 |
C2 |
N2 |
HN21 |
180.0 |
179.7 |
N1 |
C2 |
N2 |
HN22 |
54.8 |
359.5 |
C2 |
N1 |
C6 |
HN1 |
180.0 |
180.5 |
C6 |
N1 |
C2 |
N3 |
0.3 |
359.5 |
C6 |
N1 |
C2 |
N2 |
180.6 |
179.7 |
C4 |
C5 |
C6 |
N1 |
0.5 |
359.7 |
O6 |
C6 |
N1 |
C5 |
179.6 |
179.7 |
N1 |
C6 |
C5 |
N7 |
180.9 |
179.7 |
C2 |
N1 |
HN1 |
C6 |
180.0 |
179.5 |
HN1 |
N1 |
C2 |
N3 |
180.3 |
180.0 |
HN1 |
N1 |
C2 |
N2 |
0.7 |
0.2 |
HN1 |
N1 |
C6 |
O6 |
360.0 |
359.7 |
HN1 |
N1 |
C6 |
C5 |
180.4 |
180.1 |
N3 |
C2 |
N1 |
C6 |
0.3 |
359.5 |
N3 |
C2 |
N1 |
HN1 |
180.3 |
180.0 |
N1 |
C2 |
N3 |
N2 |
180.3 |
180.2 |
N3 |
C2 |
N2 |
HN21 |
0.3 |
359.9 |
N3 |
C2 |
N2 |
HN22 |
235.1 |
179.7 |
N9 |
C4 |
N3 |
C2 |
180.3 |
180.1 |
C2 |
N3 |
C4 |
C5 |
3.0 |
0.1 |
N2 |
C2 |
N1 |
C6 |
180.6 |
179.7 |
N2 |
C2 |
N1 |
HN1 |
0.7 |
0.2 |
N1 |
C2 |
N2 |
N3 |
179.7 |
179.8 |
N2 |
C2 |
N3 |
C4 |
177.9 |
180.0 |
HN21 |
N2 |
C2 |
HN22 |
125.2 |
180.2 |
C2 |
N3 |
C4 |
N9 |
180.3 |
180.1 |
N3 |
C4 |
N9 |
C5 |
182.2 |
180.0 |
N9 |
C4 |
C5 |
C6 |
180.0 |
180.0 |
N9 |
C4 |
C5 |
N7 |
359.6 |
360.0 |
C4 |
N9 |
C8 |
N7 |
0.2 |
359.9 |
C4 |
N9 |
C8 |
H8 |
180.2 |
180.0 |
C8 |
N9 |
C4 |
C1' |
180.1 |
180.0 |
O1' |
C1' |
N9 |
C4 |
178.0 |
180.0 |
C4 |
N9 |
C1' |
H1'1 |
52.7 |
300.1 |
C4 |
N9 |
C1' |
H1'2 |
303.3 |
60.0 |
C4 |
N3 |
C2 |
N2 |
177.9 |
180.0 |
N9 |
C4 |
N3 |
C5 |
177.3 |
180.0 |
N3 |
C4 |
N9 |
C8 |
182.3 |
180.1 |
N3 |
C4 |
N9 |
C1' |
2.3 |
0.0 |
N3 |
C4 |
C5 |
C6 |
357.5 |
360.0 |
N3 |
C4 |
C5 |
N7 |
177.2 |
180.0 |
N1 |
C6 |
C5 |
C4 |
0.5 |
359.7 |
N9 |
C4 |
C5 |
N3 |
182.5 |
180.0 |
C5 |
C4 |
N9 |
C8 |
0.1 |
0.1 |
C5 |
C4 |
N9 |
C1' |
180.1 |
180.0 |
C8 |
N7 |
C5 |
C4 |
0.5 |
360.0 |
O6 |
C6 |
C5 |
C4 |
180.9 |
180.0 |
C6 |
C5 |
C4 |
N7 |
180.4 |
180.0 |
C8 |
N9 |
C4 |
N3 |
182.3 |
180.1 |
C8 |
N9 |
C4 |
C5 |
0.1 |
0.1 |
C4 |
N9 |
C8 |
C1' |
179.9 |
180.0 |
N7 |
C8 |
N9 |
H8 |
180.0 |
179.9 |
N9 |
C8 |
N7 |
C5 |
359.6 |
0.1 |
O1' |
C1' |
N9 |
C8 |
358.0 |
360.0 |
C8 |
N9 |
C1' |
H1'1 |
232.7 |
120.0 |
C8 |
N9 |
C1' |
H1'2 |
123.2 |
240.0 |
C4 |
C5 |
N7 |
C8 |
0.5 |
360.0 |
N9 |
C8 |
N7 |
H8 |
180.0 |
180.1 |
N7 |
C8 |
N9 |
C1' |
180.3 |
180.0 |
C6 |
C5 |
N7 |
C8 |
180.0 |
180.0 |
N9 |
C8 |
H8 |
N7 |
180.0 |
179.9 |
H8 |
C8 |
N9 |
C1' |
0.3 |
0.0 |
H8 |
C8 |
N7 |
C5 |
179.6 |
180.0 |
C2' |
C4' |
O4' |
H4'1 |
234.7 |
120.0 |
C2' |
C4' |
O4' |
H4'2 |
125.3 |
239.9 |
O4' |
C4' |
C2' |
C3' |
159.4 |
300.0 |
O4' |
C4' |
C2' |
O1' |
39.1 |
60.1 |
O4' |
C4' |
C2' |
H2' |
276.2 |
180.0 |
H4'1 |
C4' |
O4' |
H4'2 |
250.6 |
119.9 |
O4' |
C4' |
C2' |
H4'1 |
125.3 |
240.0 |
O4' |
C4' |
C2' |
H4'2 |
234.7 |
120.1 |
C2' |
C4' |
O4' |
HO4' |
180.0 |
180.0 |
H4'1 |
C4' |
C2' |
H4'2 |
109.4 |
240.0 |
O3' |
C3' |
C2' |
C4' |
217.2 |
60.0 |
C4' |
C2' |
C3' |
H3'1 |
91.9 |
180.0 |
C4' |
C2' |
C3' |
H3'2 |
342.5 |
300.0 |
C3' |
C2' |
C4' |
O1' |
120.3 |
239.9 |
C3' |
C2' |
C4' |
H2' |
243.2 |
120.0 |
O1' |
C2' |
C4' |
H2' |
122.9 |
240.0 |
C4' |
C2' |
O1' |
C1' |
277.9 |
150.0 |
O4' |
C4' |
H4'1 |
C2' |
238.2 |
120.0 |
O4' |
C4' |
H4'1 |
H4'2 |
119.1 |
240.0 |
H4'1 |
C4' |
O4' |
HO4' |
305.3 |
60.0 |
C2' |
C4' |
H4'1 |
H4'2 |
240.8 |
120.0 |
H4'1 |
C4' |
C2' |
C3' |
34.2 |
60.0 |
H4'1 |
C4' |
C2' |
O1' |
273.8 |
180.0 |
H4'1 |
C4' |
C2' |
H2' |
151.0 |
300.0 |
O4' |
C4' |
H4'2 |
C2' |
121.8 |
240.0 |
O4' |
C4' |
H4'2 |
H4'1 |
240.9 |
119.9 |
H4'2 |
C4' |
O4' |
HO4' |
54.7 |
300.0 |
C2' |
C4' |
H4'2 |
H4'1 |
119.2 |
240.0 |
H4'2 |
C4' |
C2' |
C3' |
284.7 |
179.9 |
H4'2 |
C4' |
C2' |
O1' |
164.4 |
300.0 |
H4'2 |
C4' |
C2' |
H2' |
41.5 |
59.9 |
HO4' |
O4' |
C4' |
C2' |
180.0 |
180.0 |
HO4' |
O4' |
C4' |
H4'1 |
305.3 |
60.0 |
HO4' |
O4' |
C4' |
H4'2 |
54.7 |
300.0 |
C4' |
C2' |
C3' |
O3' |
217.2 |
60.0 |
C2' |
C3' |
O3' |
H3'1 |
234.7 |
120.0 |
C2' |
C3' |
O3' |
H3'2 |
125.2 |
240.0 |
O3' |
C3' |
C2' |
O1' |
340.5 |
300.0 |
O3' |
C3' |
C2' |
H2' |
103.8 |
180.0 |
H3'1 |
C3' |
O3' |
H3'2 |
250.5 |
119.9 |
C3' |
C2' |
C4' |
H4'1 |
34.2 |
60.0 |
C3' |
C2' |
C4' |
H4'2 |
284.7 |
179.9 |
C4' |
C2' |
C3' |
O1' |
236.7 |
120.1 |
C4' |
C2' |
C3' |
H2' |
113.4 |
240.0 |
O3' |
C3' |
C2' |
H3'1 |
125.3 |
240.0 |
O3' |
C3' |
C2' |
H3'2 |
234.7 |
120.0 |
C2' |
C3' |
O3' |
HO3' |
179.9 |
179.9 |
H3'1 |
C3' |
C2' |
H3'2 |
109.4 |
240.0 |
O1' |
C2' |
C3' |
H2' |
236.7 |
120.0 |
C3' |
C2' |
O1' |
C1' |
149.7 |
270.0 |
O3' |
C3' |
H3'1 |
C2' |
231.0 |
120.0 |
O3' |
C3' |
H3'1 |
H3'2 |
115.5 |
240.1 |
H3'1 |
C3' |
O3' |
HO3' |
305.2 |
59.9 |
C2' |
C3' |
H3'1 |
H3'2 |
244.6 |
120.1 |
H3'1 |
C3' |
C2' |
O1' |
215.2 |
60.0 |
H3'1 |
C3' |
C2' |
H2' |
338.5 |
300.0 |
O3' |
C3' |
H3'2 |
C2' |
129.0 |
240.0 |
O3' |
C3' |
H3'2 |
H3'1 |
244.5 |
120.0 |
H3'2 |
C3' |
O3' |
HO3' |
54.7 |
300.0 |
C2' |
C3' |
H3'2 |
H3'1 |
115.5 |
240.0 |
H3'2 |
C3' |
C2' |
O1' |
105.8 |
180.0 |
H3'2 |
C3' |
C2' |
H2' |
229.1 |
60.0 |
HO3' |
O3' |
C3' |
C2' |
179.9 |
179.9 |
HO3' |
O3' |
C3' |
H3'1 |
305.2 |
59.9 |
HO3' |
O3' |
C3' |
H3'2 |
54.7 |
300.0 |
O1' |
C2' |
C4' |
H4'1 |
273.8 |
180.0 |
O1' |
C2' |
C4' |
H4'2 |
164.4 |
300.0 |
C4' |
C2' |
O1' |
C3' |
128.2 |
240.0 |
C4' |
C2' |
O1' |
H2' |
246.0 |
120.0 |
O1' |
C2' |
C3' |
H3'1 |
215.2 |
60.0 |
O1' |
C2' |
C3' |
H3'2 |
105.8 |
180.0 |
C3' |
C2' |
O1' |
H2' |
117.8 |
240.0 |
C2' |
O1' |
C1' |
N9 |
250.6 |
180.0 |
C2' |
O1' |
C1' |
H1'1 |
15.9 |
59.9 |
C2' |
O1' |
C1' |
H1'2 |
125.4 |
300.0 |
H2' |
C2' |
C4' |
H4'1 |
151.0 |
300.0 |
H2' |
C2' |
C4' |
H4'2 |
41.5 |
59.9 |
C4' |
C2' |
H2' |
C3' |
235.5 |
120.0 |
C4' |
C2' |
H2' |
O1' |
119.2 |
240.0 |
H2' |
C2' |
C3' |
H3'1 |
338.5 |
300.0 |
H2' |
C2' |
C3' |
H3'2 |
229.1 |
60.0 |
C3' |
C2' |
H2' |
O1' |
243.7 |
120.0 |
H2' |
C2' |
O1' |
C1' |
31.9 |
30.0 |
C4 |
N9 |
C1' |
O1' |
178.0 |
180.0 |
C8 |
N9 |
C1' |
O1' |
358.0 |
360.0 |
C1' |
O1' |
C2' |
H2' |
31.9 |
30.0 |
N9 |
C1' |
O1' |
H1'1 |
234.7 |
120.1 |
N9 |
C1' |
O1' |
H1'2 |
125.3 |
240.0 |
H1'1 |
C1' |
O1' |
H1'2 |
250.6 |
119.9 |
C1' |
N9 |
C4 |
N3 |
2.3 |
0.0 |
C1' |
N9 |
C4 |
C5 |
180.1 |
180.0 |
C4 |
N9 |
C1' |
C8 |
180.1 |
180.0 |
C1' |
N9 |
C8 |
N7 |
180.3 |
180.0 |
C1' |
N9 |
C8 |
H8 |
0.3 |
0.0 |
O1' |
C1' |
N9 |
H1'1 |
125.3 |
239.9 |
O1' |
C1' |
N9 |
H1'2 |
234.8 |
120.0 |
H1'1 |
C1' |
N9 |
H1'2 |
109.5 |
240.1 |
O1' |
C1' |
H1'1 |
N9 |
242.9 |
120.1 |
O1' |
C1' |
H1'1 |
H1'2 |
121.4 |
240.1 |
N9 |
C1' |
H1'1 |
H1'2 |
238.5 |
120.0 |
O1' |
C1' |
H1'2 |
N9 |
117.0 |
239.9 |
O1' |
C1' |
H1'2 |
H1'1 |
238.5 |
120.0 |
N9 |
C1' |
H1'2 |
H1'1 |
121.5 |
240.0 |
C2 |
N2 |
HN21 |
HN22 |
234.7 |
179.8 |
C2 |
N2 |
HN22 |
HN21 |
134.4 |
180.2 |
O6 |
C6 |
N1 |
HN1 |
360.0 |
359.7 |
N1 |
C6 |
O6 |
C5 |
180.5 |
180.3 |
C4 |
C5 |
C6 |
O6 |
180.9 |
180.0 |
O6 |
C6 |
C5 |
N7 |
1.4 |
0.0 |
C5 |
C6 |
N1 |
HN1 |
180.4 |
180.1 |
N1 |
C6 |
C5 |
O6 |
179.6 |
179.7 |
C4 |
C5 |
C6 |
N7 |
179.5 |
180.0 |
C8 |
N7 |
C5 |
C6 |
180.0 |
180.0 |
C4 |
C5 |
N7 |
C6 |
180.4 |
180.0 |
C5 |
N7 |
C8 |
H8 |
179.6 |
180.0 |