PDB Chemical Component G9V
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for G9V
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C19 |
N20 |
1.369 |
1.361 |
C19 |
C18 |
1.353 |
1.349 |
N20 |
C16 |
1.381 |
1.376 |
C18 |
C17 |
1.407 |
1.407 |
C16 |
C17 |
1.413 |
1.399 |
C16 |
C14 |
1.418 |
1.409 |
C17 |
C11 |
1.482 |
1.468 |
C3 |
N4 |
1.304 |
1.302 |
C3 |
N2 |
1.369 |
1.359 |
N4 |
C5 |
1.354 |
1.348 |
O15 |
C14 |
1.238 |
1.220 |
C14 |
N13 |
1.356 |
1.345 |
N2 |
C1 |
1.475 |
1.465 |
N2 |
C6 |
1.381 |
1.382 |
C5 |
C6 |
1.417 |
1.405 |
C5 |
C10 |
1.425 |
1.411 |
C11 |
C10 |
1.492 |
1.481 |
C11 |
C12 |
1.366 |
1.360 |
C6 |
C7 |
1.393 |
1.386 |
C10 |
C9 |
1.395 |
1.385 |
N13 |
C12 |
1.383 |
1.363 |
N13 |
C22 |
1.482 |
1.465 |
C7 |
C8 |
1.406 |
1.394 |
C9 |
C8 |
1.401 |
1.400 |
C8 |
C26 |
1.489 |
1.476 |
C22 |
C23 |
1.550 |
1.530 |
C23 |
C24 |
1.498 |
1.507 |
O27 |
C26 |
1.218 |
1.215 |
C26 |
N28 |
1.371 |
1.348 |
C24 |
C25 |
1.323 |
1.310 |
N28 |
C29 |
1.490 |
1.471 |
N28 |
C33 |
1.483 |
1.471 |
C29 |
C30 |
1.540 |
1.533 |
C33 |
C32 |
1.533 |
1.533 |
C30 |
O31 |
1.451 |
1.430 |
C32 |
O31 |
1.437 |
1.429 |
C7 |
H1 |
1.081 |
1.080 |
C9 |
H2 |
1.080 |
1.080 |
C29 |
H3 |
1.100 |
1.090 |
C29 |
H4 |
1.100 |
1.090 |
N20 |
H5 |
1.000 |
0.971 |
C18 |
H6 |
1.080 |
1.080 |
C1 |
H7 |
1.100 |
1.090 |
C1 |
H8 |
1.100 |
1.090 |
C1 |
H9 |
1.100 |
1.090 |
C24 |
H10 |
1.080 |
1.080 |
C25 |
H11 |
1.079 |
1.080 |
C25 |
H12 |
1.080 |
1.079 |
C32 |
H13 |
1.100 |
1.090 |
C32 |
H14 |
1.099 |
1.090 |
C22 |
H15 |
1.100 |
1.090 |
C22 |
H16 |
1.100 |
1.090 |
C12 |
H17 |
1.080 |
1.080 |
C19 |
H18 |
1.080 |
1.080 |
C33 |
H19 |
1.100 |
1.090 |
C33 |
H20 |
1.100 |
1.090 |
C3 |
H21 |
1.080 |
1.081 |
C23 |
H22 |
1.100 |
1.090 |
C23 |
H23 |
1.100 |
1.090 |
C30 |
H24 |
1.100 |
1.090 |
C30 |
H25 |
1.100 |
1.090 |
Bond Angles for G9V
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C19 |
N20 |
H5 |
125.7 |
125.6 |
C19 |
C18 |
H6 |
125.9 |
126.1 |
N20 |
C16 |
C17 |
107.1 |
107.0 |
N20 |
C16 |
C14 |
133.0 |
134.1 |
C16 |
N20 |
H5 |
125.7 |
125.5 |
C18 |
C17 |
C16 |
106.6 |
106.9 |
C18 |
C17 |
C11 |
134.9 |
134.5 |
C17 |
C18 |
H6 |
125.9 |
126.1 |
C17 |
C16 |
C14 |
119.9 |
118.9 |
C16 |
C14 |
O15 |
118.8 |
119.7 |
C16 |
C14 |
N13 |
119.9 |
120.6 |
C17 |
C11 |
C12 |
117.5 |
118.7 |
N4 |
C3 |
H21 |
125.0 |
125.0 |
O15 |
C14 |
N13 |
121.3 |
119.7 |
C6 |
N2 |
C1 |
126.2 |
126.5 |
N2 |
C1 |
H7 |
109.5 |
109.5 |
N2 |
C1 |
H8 |
109.5 |
109.5 |
N2 |
C1 |
H9 |
109.4 |
109.5 |
C11 |
C12 |
N13 |
122.5 |
121.0 |
C11 |
C12 |
H17 |
118.7 |
119.6 |
C6 |
C7 |
C8 |
119.9 |
120.0 |
C6 |
C7 |
H1 |
120.1 |
120.0 |
C10 |
C9 |
C8 |
121.1 |
120.2 |
C10 |
C9 |
H2 |
119.4 |
119.9 |
C22 |
N13 |
C12 |
117.7 |
118.9 |
N13 |
C12 |
H17 |
118.7 |
119.5 |
N13 |
C22 |
C23 |
109.8 |
109.4 |
N13 |
C22 |
H15 |
109.4 |
109.4 |
N13 |
C22 |
H16 |
109.4 |
109.5 |
C7 |
C8 |
C9 |
120.1 |
120.3 |
C7 |
C8 |
C26 |
118.6 |
119.9 |
C8 |
C7 |
H1 |
120.0 |
120.0 |
C9 |
C8 |
C26 |
121.2 |
119.9 |
C8 |
C9 |
H2 |
119.4 |
119.8 |
C8 |
C26 |
N28 |
121.2 |
120.0 |
C23 |
C22 |
H15 |
109.4 |
109.5 |
C23 |
C22 |
H16 |
109.4 |
109.5 |
C22 |
C23 |
H22 |
108.5 |
109.5 |
C22 |
C23 |
H23 |
108.5 |
109.5 |
C23 |
C24 |
H10 |
120.4 |
120.0 |
C25 |
C24 |
H10 |
120.4 |
120.0 |
C24 |
C25 |
H11 |
120.0 |
120.0 |
C24 |
C25 |
H12 |
120.0 |
120.0 |
N28 |
C29 |
C30 |
107.3 |
108.4 |
N28 |
C29 |
H3 |
110.0 |
109.7 |
N28 |
C29 |
H4 |
110.0 |
109.7 |
N28 |
C33 |
H19 |
109.6 |
109.7 |
N28 |
C33 |
H20 |
109.6 |
109.6 |
C29 |
C30 |
O31 |
107.8 |
109.2 |
C30 |
C29 |
H3 |
110.0 |
109.7 |
C30 |
C29 |
H4 |
110.0 |
109.7 |
C29 |
C30 |
H24 |
109.9 |
109.5 |
C29 |
C30 |
H25 |
109.9 |
109.6 |
C33 |
C32 |
H13 |
109.3 |
109.5 |
C33 |
C32 |
H14 |
109.3 |
109.5 |
O31 |
C32 |
H13 |
109.3 |
109.6 |
O31 |
C32 |
H14 |
109.3 |
109.5 |
H3 |
C29 |
H4 |
109.5 |
109.7 |
H7 |
C1 |
H8 |
109.5 |
109.5 |
H7 |
C1 |
H9 |
109.5 |
109.4 |
H8 |
C1 |
H9 |
109.5 |
109.5 |
H11 |
C25 |
H12 |
120.0 |
120.0 |
H13 |
C32 |
H14 |
109.5 |
109.5 |
H15 |
C22 |
H16 |
109.5 |
109.5 |
H19 |
C33 |
H20 |
109.5 |
109.7 |
H22 |
C23 |
H23 |
109.5 |
109.4 |
H24 |
C30 |
H25 |
109.5 |
109.5 |
Torsion Angles for G9V
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C19 |
N20 |
C16 |
C14 |
179.7 |
180.2 |
C16 |
N20 |
C19 |
H5 |
180.0 |
179.7 |
C18 |
C19 |
N20 |
H5 |
179.2 |
179.8 |
C17 |
C18 |
C19 |
H6 |
180.0 |
180.2 |
C19 |
N20 |
C16 |
H5 |
180.0 |
180.3 |
C18 |
C17 |
C16 |
N20 |
359.9 |
0.0 |
C17 |
C16 |
N20 |
C14 |
180.8 |
180.0 |
N20 |
C16 |
C14 |
O15 |
359.5 |
0.1 |
N20 |
C16 |
C14 |
N13 |
180.5 |
180.0 |
C19 |
C18 |
C17 |
H6 |
180.0 |
179.8 |
N20 |
C16 |
C17 |
C18 |
359.9 |
0.0 |
C18 |
C17 |
C16 |
C14 |
180.6 |
180.0 |
C18 |
C17 |
C11 |
C12 |
179.4 |
180.0 |
N20 |
C16 |
C17 |
C14 |
179.3 |
180.0 |
C17 |
C16 |
N20 |
H5 |
180.5 |
180.0 |
C18 |
C17 |
C16 |
C11 |
181.5 |
180.2 |
C16 |
C17 |
C18 |
H6 |
179.6 |
180.0 |
C17 |
C16 |
C14 |
O15 |
178.6 |
180.0 |
C17 |
C16 |
C14 |
N13 |
359.6 |
0.0 |
C16 |
C17 |
C11 |
C12 |
1.4 |
0.2 |
N20 |
C16 |
C14 |
C17 |
180.9 |
180.0 |
C14 |
C16 |
N20 |
H5 |
359.7 |
359.9 |
O15 |
C14 |
C16 |
N13 |
178.9 |
180.0 |
N20 |
C16 |
C17 |
C11 |
178.4 |
179.8 |
C18 |
C17 |
C11 |
C16 |
177.9 |
179.7 |
C11 |
C17 |
C18 |
H6 |
1.5 |
0.2 |
C17 |
C11 |
C12 |
N13 |
359.3 |
359.9 |
C17 |
C11 |
C12 |
H17 |
179.3 |
179.9 |
C3 |
N2 |
C1 |
H7 |
180.0 |
270.0 |
C3 |
N2 |
C1 |
H8 |
300.0 |
30.0 |
C3 |
N2 |
C1 |
H9 |
60.0 |
150.0 |
C16 |
C14 |
O15 |
N13 |
181.1 |
180.0 |
C16 |
C14 |
N13 |
O15 |
178.9 |
180.0 |
C14 |
N13 |
C12 |
H17 |
179.3 |
179.9 |
C14 |
N13 |
C22 |
C23 |
258.6 |
270.0 |
C14 |
N13 |
C22 |
H15 |
18.6 |
30.0 |
C14 |
N13 |
C22 |
H16 |
138.5 |
150.0 |
H7 |
C1 |
N2 |
H8 |
240.0 |
239.9 |
H7 |
C1 |
N2 |
H9 |
120.0 |
120.0 |
H8 |
C1 |
N2 |
H9 |
240.0 |
240.0 |
C6 |
N2 |
C1 |
H7 |
356.4 |
90.0 |
C6 |
N2 |
C1 |
H8 |
116.5 |
210.1 |
C6 |
N2 |
C1 |
H9 |
236.4 |
330.1 |
N2 |
C6 |
C7 |
C8 |
179.7 |
180.1 |
N2 |
C6 |
C7 |
H1 |
359.7 |
359.8 |
C5 |
C6 |
C7 |
H1 |
177.2 |
179.7 |
C5 |
C10 |
C9 |
H2 |
179.4 |
180.0 |
C11 |
C10 |
C9 |
C8 |
182.4 |
180.0 |
C11 |
C10 |
C9 |
H2 |
2.4 |
0.5 |
C22 |
N13 |
C12 |
C11 |
182.7 |
179.9 |
N13 |
C12 |
C11 |
H17 |
180.0 |
179.9 |
C6 |
C7 |
C8 |
C9 |
1.6 |
359.8 |
C6 |
C7 |
C8 |
C26 |
177.4 |
179.7 |
C8 |
C7 |
C6 |
H1 |
180.0 |
180.3 |
C7 |
C8 |
C9 |
C10 |
0.1 |
0.5 |
C10 |
C9 |
C8 |
C26 |
184.4 |
180.5 |
C8 |
C9 |
C10 |
H2 |
180.0 |
179.5 |
C16 |
C14 |
N13 |
C12 |
1.2 |
0.1 |
O15 |
C14 |
N13 |
C12 |
182.3 |
180.1 |
C11 |
C12 |
N13 |
H17 |
180.0 |
180.1 |
C12 |
N13 |
C22 |
C23 |
75.3 |
90.0 |
C12 |
N13 |
C22 |
H15 |
195.3 |
210.0 |
C12 |
N13 |
C22 |
H16 |
315.2 |
330.0 |
C16 |
C14 |
N13 |
C22 |
177.7 |
180.1 |
O15 |
C14 |
N13 |
C22 |
358.8 |
0.1 |
C11 |
C12 |
N13 |
C22 |
182.7 |
179.9 |
C22 |
N13 |
C12 |
H17 |
2.7 |
359.9 |
C23 |
C22 |
N13 |
H15 |
240.0 |
240.0 |
C23 |
C22 |
N13 |
H16 |
120.1 |
120.0 |
N13 |
C22 |
C23 |
H22 |
301.0 |
60.0 |
N13 |
C22 |
C23 |
H23 |
59.8 |
300.0 |
H15 |
C22 |
N13 |
H16 |
240.1 |
240.0 |
C6 |
C7 |
C8 |
H1 |
180.0 |
179.7 |
C10 |
C9 |
C8 |
C7 |
0.1 |
0.5 |
C9 |
C8 |
C7 |
C26 |
184.2 |
180.0 |
C7 |
C8 |
C9 |
H2 |
180.1 |
180.0 |
C7 |
C8 |
C26 |
N28 |
288.1 |
310.9 |
C10 |
C9 |
C8 |
H2 |
180.0 |
180.5 |
C7 |
C8 |
C9 |
C26 |
175.7 |
180.0 |
C9 |
C8 |
C7 |
H1 |
181.6 |
180.0 |
C9 |
C8 |
C26 |
N28 |
103.9 |
130.9 |
C7 |
C8 |
C26 |
C9 |
184.2 |
180.0 |
C26 |
C8 |
C7 |
H1 |
357.4 |
0.0 |
C26 |
C8 |
C9 |
H2 |
4.4 |
0.0 |
C23 |
C22 |
N13 |
C12 |
75.3 |
90.0 |
N13 |
C22 |
C23 |
H15 |
120.0 |
120.0 |
N13 |
C22 |
C23 |
H16 |
239.9 |
240.0 |
C22 |
C23 |
C24 |
H10 |
301.5 |
305.0 |
H15 |
C22 |
C23 |
H16 |
119.9 |
120.1 |
H22 |
C23 |
C22 |
H23 |
241.1 |
120.0 |
N13 |
C22 |
C23 |
C24 |
180.4 |
180.0 |
C25 |
C24 |
C23 |
H10 |
180.0 |
180.0 |
C23 |
C24 |
C25 |
H11 |
180.0 |
180.0 |
C23 |
C24 |
C25 |
H12 |
0.0 |
0.1 |
C26 |
N28 |
C29 |
C30 |
238.8 |
230.5 |
C26 |
N28 |
C29 |
H3 |
358.4 |
350.3 |
C26 |
N28 |
C29 |
H4 |
119.1 |
110.8 |
C26 |
N28 |
C33 |
H19 |
244.6 |
9.7 |
C26 |
N28 |
C33 |
H20 |
4.9 |
249.2 |
C23 |
C24 |
C25 |
H10 |
180.0 |
180.0 |
H11 |
C25 |
C24 |
H12 |
180.0 |
179.9 |
N28 |
C29 |
C30 |
O31 |
304.2 |
307.7 |
C30 |
C29 |
N28 |
H3 |
240.3 |
240.3 |
C30 |
C29 |
N28 |
H4 |
119.7 |
119.7 |
N28 |
C29 |
C30 |
H24 |
64.0 |
67.6 |
N28 |
C29 |
C30 |
H25 |
184.5 |
187.8 |
H3 |
C29 |
N28 |
H4 |
239.3 |
239.4 |
C8 |
C26 |
N28 |
C33 |
177.5 |
183.8 |
C33 |
N28 |
C29 |
C30 |
57.2 |
50.5 |
C33 |
N28 |
C29 |
H3 |
176.9 |
170.3 |
C33 |
N28 |
C29 |
H4 |
297.5 |
290.8 |
N28 |
C33 |
C32 |
H13 |
169.7 |
292.3 |
N28 |
C33 |
C32 |
H14 |
289.4 |
172.3 |
H19 |
C33 |
N28 |
H20 |
239.7 |
120.4 |
N28 |
C29 |
C30 |
H3 |
119.6 |
119.8 |
N28 |
C29 |
C30 |
H4 |
240.3 |
240.3 |
H3 |
C29 |
C30 |
H4 |
120.7 |
120.5 |
H24 |
C30 |
C29 |
H25 |
239.5 |
239.8 |
O31 |
C32 |
C33 |
H13 |
239.9 |
120.0 |
O31 |
C32 |
C33 |
H14 |
120.1 |
240.0 |
H13 |
C32 |
C33 |
H14 |
240.2 |
120.1 |
O31 |
C30 |
C29 |
H3 |
184.6 |
188.0 |
O31 |
C30 |
C29 |
H4 |
63.9 |
67.4 |
C29 |
C30 |
O31 |
H24 |
119.7 |
119.9 |
C29 |
C30 |
O31 |
H25 |
240.3 |
240.0 |
C30 |
O31 |
C32 |
H13 |
182.3 |
57.3 |
C30 |
O31 |
C32 |
H14 |
62.5 |
177.5 |
C29 |
C30 |
O31 |
C32 |
60.7 |
62.6 |
C33 |
C32 |
O31 |
H13 |
120.1 |
240.1 |
C33 |
C32 |
O31 |
H14 |
239.9 |
120.0 |
H13 |
C32 |
O31 |
H14 |
119.8 |
239.9 |
C6 |
C7 |
H1 |
C8 |
180.0 |
180.3 |
H1 |
C7 |
C8 |
C9 |
181.6 |
180.0 |
H1 |
C7 |
C8 |
C26 |
357.4 |
0.0 |
C10 |
C9 |
H2 |
C8 |
180.0 |
179.5 |
H2 |
C9 |
C8 |
C26 |
4.4 |
0.0 |
N28 |
C29 |
H3 |
C30 |
242.0 |
241.1 |
N28 |
C29 |
H3 |
H4 |
121.0 |
120.6 |
H3 |
C29 |
C30 |
O31 |
184.6 |
188.0 |
C30 |
C29 |
H3 |
H4 |
239.0 |
239.5 |
H3 |
C29 |
C30 |
H24 |
304.3 |
307.9 |
H3 |
C29 |
C30 |
H25 |
64.8 |
68.1 |
N28 |
C29 |
H4 |
C30 |
118.0 |
118.9 |
N28 |
C29 |
H4 |
H3 |
239.0 |
239.4 |
H4 |
C29 |
C30 |
O31 |
63.9 |
67.4 |
C30 |
C29 |
H4 |
H3 |
121.0 |
120.5 |
H4 |
C29 |
C30 |
H24 |
183.6 |
187.3 |
H4 |
C29 |
C30 |
H25 |
304.1 |
307.5 |
H5 |
N20 |
C16 |
C17 |
180.5 |
180.0 |
H5 |
N20 |
C16 |
C14 |
359.7 |
359.9 |
H6 |
C18 |
C17 |
C16 |
179.6 |
180.0 |
H6 |
C18 |
C17 |
C11 |
1.5 |
0.2 |
N2 |
C1 |
H7 |
H8 |
120.0 |
120.1 |
N2 |
C1 |
H7 |
H9 |
240.0 |
240.0 |
H8 |
C1 |
H7 |
H9 |
120.0 |
120.0 |
N2 |
C1 |
H8 |
H7 |
240.0 |
239.9 |
N2 |
C1 |
H8 |
H9 |
119.9 |
120.0 |
H7 |
C1 |
H8 |
H9 |
240.0 |
240.0 |
N2 |
C1 |
H9 |
H7 |
120.0 |
120.0 |
N2 |
C1 |
H9 |
H8 |
240.0 |
240.0 |
H7 |
C1 |
H9 |
H8 |
120.0 |
120.0 |
H10 |
C24 |
C25 |
H11 |
0.0 |
359.9 |
H10 |
C24 |
C25 |
H12 |
180.0 |
180.0 |
H11 |
C25 |
C24 |
H10 |
0.0 |
359.9 |
C24 |
C25 |
H11 |
H12 |
180.0 |
180.1 |
H12 |
C25 |
C24 |
H10 |
180.0 |
180.0 |
C24 |
C25 |
H12 |
H11 |
180.0 |
179.9 |
C33 |
C32 |
H13 |
H14 |
119.7 |
239.9 |
O31 |
C32 |
H13 |
H14 |
240.3 |
120.2 |
C33 |
C32 |
H14 |
H13 |
240.3 |
120.0 |
O31 |
C32 |
H14 |
H13 |
119.7 |
239.8 |
H15 |
C22 |
N13 |
C12 |
195.3 |
210.0 |
N13 |
C22 |
H15 |
C23 |
239.7 |
240.0 |
N13 |
C22 |
H15 |
H16 |
119.9 |
120.0 |
C23 |
C22 |
H15 |
H16 |
240.1 |
240.0 |
H15 |
C22 |
C23 |
H22 |
181.0 |
300.1 |
H15 |
C22 |
C23 |
H23 |
299.8 |
180.1 |
H16 |
C22 |
N13 |
C12 |
315.2 |
330.0 |
N13 |
C22 |
H16 |
C23 |
120.3 |
119.9 |
N13 |
C22 |
H16 |
H15 |
240.2 |
240.0 |
C23 |
C22 |
H16 |
H15 |
119.9 |
120.1 |
H16 |
C22 |
C23 |
H22 |
61.1 |
180.0 |
H16 |
C22 |
C23 |
H23 |
179.9 |
60.0 |
C11 |
C12 |
H17 |
N13 |
180.0 |
179.9 |
H18 |
C19 |
N20 |
H5 |
359.2 |
0.3 |
H18 |
C19 |
C18 |
H6 |
0.7 |
359.8 |
N28 |
C33 |
H19 |
H20 |
120.3 |
239.6 |
H19 |
C33 |
C32 |
H13 |
49.8 |
52.1 |
H19 |
C33 |
C32 |
H14 |
169.6 |
292.0 |
N28 |
C33 |
H20 |
H19 |
239.7 |
120.4 |
H20 |
C33 |
C32 |
H13 |
289.5 |
172.6 |
H20 |
C33 |
C32 |
H14 |
49.3 |
52.6 |
H22 |
C23 |
C22 |
H15 |
181.0 |
300.1 |
H22 |
C23 |
C22 |
H16 |
61.1 |
180.0 |
C22 |
C23 |
H22 |
H23 |
118.2 |
240.0 |
H22 |
C23 |
C24 |
H10 |
180.9 |
65.0 |
H23 |
C23 |
C22 |
H15 |
299.8 |
180.1 |
H23 |
C23 |
C22 |
H16 |
179.9 |
60.0 |
C22 |
C23 |
H23 |
H22 |
241.8 |
120.0 |
H23 |
C23 |
C24 |
H10 |
62.0 |
185.0 |
C29 |
C30 |
H24 |
O31 |
241.6 |
240.2 |
H24 |
C30 |
C29 |
H3 |
304.3 |
307.9 |
H24 |
C30 |
C29 |
H4 |
183.6 |
187.3 |
C29 |
C30 |
H24 |
H25 |
120.7 |
120.2 |
C29 |
C30 |
H25 |
O31 |
118.4 |
119.8 |
H25 |
C30 |
C29 |
H3 |
64.8 |
68.1 |
H25 |
C30 |
C29 |
H4 |
304.1 |
307.5 |
C29 |
C30 |
H25 |
H24 |
239.2 |
239.8 |