Atom Nomenclature for G97

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for G97

Atom Name (V3) Atom Name (V2)
CAH CAH
CAE CAE
CAD CAD
CAF CAF
CAI CAI
CAW CAW
C2 C2
N1 N1
N3 N3
C4 C4
CAM CAM
CAU CAU
NAQ NAQ
CAT CAT
OAB OAB
CAC CAC
CAA CAA
CAK CAK
CAL CAL
C5 C5
C6 C6
NAR NAR
CAV CAV
CAJ CAJ
CAG CAG
NAS NAS
NAN NAN
HAH HAH
HAE HAE
HAD HAD
HAF HAF
HAI HAI
HAM HAM
HNAQ HNAQ
HAC HAC
HAA HAA
HAAA HAAA
HAK HAK
HAL HAL
HNAR HNAR
HAJ HAJ
HAG HAG
HNAS HNAS