Atom Nomenclature for G91

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for G91

Atom Name (V3) Atom Name (V2)
C4 C1
C14 C2
C5 C3
C6 C4
C11 C5
C7 C6
C9 C7
C10 C8
C12 C9
C3 C10
C1 C11
C2 C12
O13 O1
C15 C13
C16 C14
C17 C15
C18 C16
C19 C17
O20 O2
C21 C18
C22 C19
C23 C20
C24 C21
C25 C22
C26 C23
O27 O3
O28 O4
O29 O5
C30 C24
C31 C25
N32 N1
C33 C26
C34 C27
C35 C28
C36 C29
F37 F1
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29