Atom Nomenclature for G83

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for G83

Atom Name (V3) Atom Name (V2)
O19 O19
C17 C17
O15 O15
C13 C13
C4 C4
C6 C6
C8 C8
C10 C10
C1 C1
C2 C2
N21 N21
C23 C23
C25 C25
C14 C14
O1 O1
O2 O2
C29 C29
C12 C12
C43 C43
C45 C45
C31 C31
O35 O35
N33 N33
C37 C37
C41 C41
C51 C51
C53 C53
C7 C7
C9 C9
C11 C11
C55 C55
C39 C39
O47 O47
N49 N49
C57 C57
C59 C59
C61 C61
C73 C73
C71 C71
N69 N69
C65 C65
O66 O66
C63 C63
C82 C82
C84 C84
O88 O88
O86 O86
C3 C3
C5 C5
H21 H21
H131 H131
H132 H132
H6 H6
H2 H2
H8 H8
H10 H10
H1 H1
H23 H23
H251 H251
H252 H252
H121 H121
H122 H122
H123 H123
H431 H431
H432 H432
H433 H433
H451 H451
H452 H452
H453 H453
H33 H33
H37 H37
H411 H411
H412 H412
H53 H53
H55 H55
H7 H7
H9 H9
H11 H11
H49 H49
H57 H57
H591 H591
H592 H592
H631 H631
H632 H632
H61 H61
H731 H731
H732 H732
H711 H711
H712 H712
H69 H69
H821 H821
H822 H822
H31C H31C
H32C H32C
H51C H51C
H52C H52C
H53C H53C