Atom Nomenclature for G7W

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for G7W

Atom Name (V3) Atom Name (V2)
C13 C1
C15 C2
C20 C3
C21 C4
C28 C5
F01 F1
C02 C6
C03 C7
C04 C8
C05 C9
C06 C10
C07 C11
C08 C12
C09 C13
N10 N1
C11 C14
C12 C15
C14 C16
N16 N2
N17 N3
C18 C17
C19 C18
N22 N4
C23 C19
N24 N5
C25 C20
N26 N6
C27 C21
C29 C22
O30 O1
O31 O2
C32 C23
C33 C24
C34 C25
F35 F2
F36 F3
F37 F4
H131 H1
H201 H2
H202 H3
H203 H4
H281 H5
H031 H6
H041 H7
H1 H8
H081 H10
H101 H12
H121 H13
H181 H14
H191 H15
H193 H16
H192 H17
H231 H18
H262 H19
H261 H20
H291 H21
H321 H22