PDB Chemical Component G7M

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for G7M

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
OP3 P 1.531 1.480
OP3 HOP3 0.950  
P OP1 1.483 1.611
P OP2 1.480 1.610
P O5' 1.601 1.610
OP2 HOP2 0.951 0.967
O5' C5' 1.444 1.429
C5' C4' 1.526 1.531
C5' H5' 1.116 1.090
C5' H5'' 1.114 1.091
C4' O4' 1.454 1.444
C4' C3' 1.518 1.545
C4' H4' 1.115 1.090
O4' C1' 1.424 1.444
C3' O3' 1.422 1.429
C3' C2' 1.520 1.547
C3' H3' 1.115 1.090
O3' HO3' 0.951 0.967
C2' O2' 1.416 1.429
C2' C1' 1.534 1.544
C2' H2' 1.116 1.090
O2' HO2' 0.950 0.967
C1' N9 1.480 1.466
C1' H1' 1.115 1.090
N9 C8 1.382 1.365
N9 C4 1.376 1.368
C8 N7 1.310 1.300
C8 H8 1.103 1.080
N7 CN7 1.483 1.465
N7 C5 1.389 1.356
CN7 HN71 1.115 1.090
CN7 HN72 1.114 1.090
CN7 HN73 1.116 1.090
C5 C6 1.422 1.414
C5 C4 1.373 1.399
C6 O6 1.230 1.220
C6 N1 1.400 1.352
N1 C2 1.389 1.363
N1 H1 1.020 0.970
C2 N2 1.329 1.372
C2 N3 1.316 1.315
N2 H21 1.020 0.970
N2 H22 1.020 0.970
N3 C4 1.358 1.339

Bond Angles for G7M

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
P OP3 HOP3 109.6  
OP3 P OP1 109.6 109.4
OP3 P OP2 113.4 109.5
OP3 P O5' 102.9 109.5
OP1 P OP2 117.4 109.5
OP1 P O5' 103.2 109.4
OP2 P O5' 108.7 109.5
P OP2 HOP2 113.4 106.8
P O5' C5' 118.5 106.8
O5' C5' C4' 108.8 109.5
O5' C5' H5' 112.5 109.5
O5' C5' H5'' 112.5 109.4
C4' C5' H5' 112.4 109.5
C4' C5' H5'' 112.4 109.5
C5' C4' O4' 107.4 110.4
C5' C4' C3' 115.6 110.5
C5' C4' H4' 105.4 110.3
H5' C5' H5'' 98.0 109.5
O4' C4' C3' 104.9 104.8
O4' C4' H4' 116.0 110.4
C4' O4' C1' 109.8 105.3
C3' C4' H4' 107.9 110.4
C4' C3' O3' 111.7 110.5
C4' C3' C2' 102.1 104.1
C4' C3' H3' 114.8 110.5
O4' C1' C2' 106.7 104.9
O4' C1' N9 106.6 110.4
O4' C1' H1' 115.5 110.3
O3' C3' C2' 114.5 110.6
O3' C3' H3' 102.3 110.5
C3' O3' HO3' 111.7 106.8
C2' C3' H3' 111.9 110.6
C3' C2' O2' 111.4 110.5
C3' C2' C1' 102.1 104.0
C3' C2' H2' 114.9 110.5
O2' C2' C1' 114.4 110.8
O2' C2' H2' 102.7 110.4
C2' O2' HO2' 111.4 106.8
C1' C2' H2' 111.9 110.5
C2' C1' N9 115.7 110.4
C2' C1' H1' 106.2 110.4
N9 C1' H1' 106.4 110.3
C1' N9 C8 128.9 126.2
C1' N9 C4 126.0 126.3
C8 N9 C4 105.0 107.5
N9 C8 N7 113.9 109.8
N9 C8 H8 125.4 125.1
N9 C4 C5 106.5 106.1
N9 C4 N3 124.6 134.2
N7 C8 H8 120.7 125.1
C8 N7 CN7 127.8 125.4
C8 N7 C5 103.7 109.3
CN7 N7 C5 127.9 125.3
N7 CN7 HN71 127.8 109.4
N7 CN7 HN72 105.8 109.5
N7 CN7 HN73 105.8 109.4
N7 C5 C6 129.9 134.1
N7 C5 C4 110.8 107.2
HN71 CN7 HN72 105.9 109.5
HN71 CN7 HN73 105.8 109.5
HN72 CN7 HN73 103.6 109.5
C6 C5 C4 119.3 118.6
C5 C6 O6 129.0 120.8
C5 C6 N1 111.1 118.4
C5 C4 N3 128.9 119.7
O6 C6 N1 119.9 120.8
C6 N1 C2 125.0 120.3
C6 N1 H1 118.0 119.8
C2 N1 H1 117.0 119.8
N1 C2 N2 115.1 119.1
N1 C2 N3 123.9 121.9
N2 C2 N3 121.0 119.1
C2 N2 H21 115.1 120.0
C2 N2 H22 110.2 119.9
C2 N3 C4 111.9 121.1
H21 N2 H22 110.1 120.1

Torsion Angles for G7M

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP3 OP2 226.5 120.0
OP1 P OP3 O5' 109.3 240.0
OP2 P OP3 O5' 242.8 120.1
OP3 P OP2 HOP2 180.0 60.0
OP3 P O5' C5' 301.9 305.1
HOP3 OP3 P OP1 180.0  
HOP3 OP3 P OP2 313.5  
HOP3 OP3 P O5' 70.7  
OP1 P OP3 HOP3 180.0  
OP3 P OP1 OP2 131.4 240.0
OP3 P OP1 O5' 250.9 120.0
OP2 P OP1 O5' 119.6 240.0
OP1 P OP2 HOP2 309.6 300.0
OP1 P O5' C5' 187.8 65.0
OP2 P OP3 HOP3 313.5  
OP3 P OP2 OP1 230.4 120.0
OP3 P OP2 O5' 113.8 239.9
OP1 P OP2 O5' 243.4 120.0
OP2 P O5' C5' 62.4 185.0
O5' P OP3 HOP3 70.7  
OP3 P O5' OP1 114.1 240.0
OP3 P O5' OP2 239.5 120.1
OP1 P O5' OP2 125.4 240.0
O5' P OP2 HOP2 66.2 180.0
P O5' C5' C4' 188.5 180.0
P O5' C5' H5' 313.7 60.0
P O5' C5' H5'' 63.3 300.0
HOP2 OP2 P O5' 66.2 180.0
C4' C5' O5' H5' 234.8 120.0
C4' C5' O5' H5'' 125.2 240.0
O5' C5' C4' O4' 305.4 66.4
O5' C5' C4' C3' 62.1 181.9
O5' C5' C4' H4' 181.1 304.2
H5' C5' O5' H5'' 250.5 120.0
O5' C5' C4' H5' 125.3 240.0
O5' C5' C4' H5'' 234.7 120.0
H5' C5' C4' H5'' 109.5 240.0
O4' C4' C5' C3' 243.3 244.6
O4' C4' C5' H4' 124.3 122.3
C5' C4' O4' C1' 142.4 159.5
C3' C4' C5' H4' 241.0 237.7
C5' C4' C3' O3' 84.3 98.4
C5' C4' C3' C2' 207.1 217.0
C5' C4' C3' H3' 328.4 335.8
O5' C5' H5' C4' 236.8 120.0
O5' C5' H5' H5'' 118.4 240.0
C4' C5' H5' H5'' 241.7 120.0
H5' C5' C4' O4' 180.2 186.5
H5' C5' C4' C3' 296.9 301.9
H5' C5' C4' H4' 55.9 64.2
O5' C5' H5'' C4' 123.2 240.0
O5' C5' H5'' H5' 241.6 120.0
C4' C5' H5'' H5' 118.3 240.0
H5'' C5' C4' O4' 70.7 306.5
H5'' C5' C4' C3' 187.4 61.9
H5'' C5' C4' H4' 306.4 184.2
O4' C4' C5' H5' 180.2 186.5
O4' C4' C5' H5'' 70.7 306.5
C5' C4' O4' C3' 123.5 119.0
C5' C4' O4' H4' 242.4 237.8
C3' C4' O4' H4' 118.9 118.8
O4' C4' C3' O3' 202.4 217.2
O4' C4' C3' C2' 325.2 335.9
O4' C4' C3' H3' 86.5 94.7
C4' O4' C1' C2' 4.9 319.5
C4' O4' C1' N9 240.7 200.6
C4' O4' C1' H1' 122.7 78.4
C3' C4' C5' H5' 296.9 301.9
C3' C4' C5' H5'' 187.4 61.9
C5' C4' C3' O4' 241.9 241.1
C5' C4' C3' H4' 117.6 122.3
O4' C4' C3' H4' 235.8 241.1
C3' C4' O4' C1' 18.9 40.5
O3' C3' C4' C2' 237.1 241.3
O3' C3' C4' H3' 115.9 122.6
C4' C3' O3' HO3' 180.0 180.0
C2' C3' C4' H3' 238.7 241.2
C4' C3' C2' O2' 274.2 241.2
C4' C3' C2' C1' 36.7 0.2
C4' C3' C2' H2' 158.0 118.7
H4' C4' C5' H5' 55.9 64.2
H4' C4' C5' H5'' 306.4 184.2
C5' C4' H4' O4' 118.7 122.2
C5' C4' H4' C3' 236.0 237.6
O4' C4' H4' C3' 117.3 115.4
H4' C4' O4' C1' 260.0 281.7
H4' C4' C3' O3' 326.6 336.1
H4' C4' C3' C2' 89.5 94.8
H4' C4' C3' H3' 210.8 213.5
C1' O4' C4' C3' 18.9 40.5
C1' O4' C4' H4' 260.0 281.7
C3' C2' C1' O4' 333.6 23.9
O2' C2' C1' O4' 94.0 142.6
O4' C1' C2' H2' 210.2 265.3
C2' C1' O4' N9 124.2 118.9
C2' C1' O4' H1' 242.2 241.1
N9 C1' O4' H1' 118.0 122.2
O4' C1' N9 C8 46.4 22.1
O4' C1' N9 C4 226.8 202.0
O3' C3' C4' H4' 326.6 336.1
C4' C3' O3' C2' 115.5 114.6
C4' C3' O3' H3' 236.8 237.4
C2' C3' O3' H3' 121.3 122.8
O3' C3' C2' O2' 35.1 359.8
O3' C3' C2' C1' 157.6 118.8
O3' C3' C2' H2' 278.9 237.3
C2' C3' C4' H4' 89.5 94.8
C4' C3' C2' O3' 239.1 241.4
C4' C3' C2' H3' 123.2 118.7
O4' C1' C2' C3' 333.6 23.9
O3' C3' C2' H3' 244.1 237.3
C2' C3' O3' HO3' 64.6 65.3
O2' C2' C3' C1' 237.5 241.0
O2' C2' C3' H2' 116.2 122.5
C3' C2' O2' HO2' 180.0 298.6
C1' C2' C3' H2' 238.7 241.5
C3' C2' C1' N9 91.9 142.8
C3' C2' C1' H1' 209.8 265.0
H3' C3' C4' H4' 210.8 213.5
C4' C3' H3' O3' 121.2 122.6
C4' C3' H3' C2' 244.3 245.3
O3' C3' H3' C2' 123.1 122.7
H3' C3' O3' HO3' 303.3 302.6
H3' C3' C2' O2' 151.0 122.5
H3' C3' C2' C1' 273.5 241.5
H3' C3' C2' H2' 34.8 0.0
HO3' O3' C3' C2' 64.6 65.3
HO3' O3' C3' H3' 303.3 302.6
O4' C1' C2' O2' 94.0 142.6
O2' C2' C3' H3' 151.0 122.5
C3' C2' O2' C1' 115.1 114.7
C3' C2' O2' H2' 236.5 237.5
C1' C2' O2' H2' 121.5 122.8
O2' C2' C1' N9 212.3 261.5
O2' C2' C1' H1' 330.2 23.7
O4' C1' C2' N9 241.6 241.1
O4' C1' C2' H1' 123.8 118.9
C1' C2' C3' H3' 273.5 241.5
C3' C2' C1' O2' 239.6 241.3
C3' C2' C1' H2' 123.4 118.5
O2' C2' C1' H2' 243.8 237.3
C1' C2' O2' HO2' 65.0 183.9
N9 C1' C2' H1' 242.1 237.8
C2' C1' N9 C8 288.0 266.5
C2' C1' N9 C4 108.4 86.5
H2' C2' C3' H3' 34.8 0.0
C3' C2' H2' O2' 121.1 122.5
C3' C2' H2' C1' 244.2 245.5
O2' C2' H2' C1' 123.1 123.0
H2' C2' O2' HO2' 303.5 61.1
H2' C2' C1' N9 328.5 24.2
H2' C2' C1' H1' 86.4 146.4
HO2' O2' C2' C1' 65.0 183.9
HO2' O2' C2' H2' 303.5 61.1
O4' C1' N9 C2' 118.4 115.6
O4' C1' N9 H1' 236.2 237.8
N9 C1' C2' H2' 328.5 24.2
C2' C1' N9 H1' 117.7 122.2
C8 N9 C1' C4 179.7 180.0
C1' N9 C8 N7 180.9 180.0
C1' N9 C8 H8 0.9 0.0
C1' N9 C4 C5 178.9 179.8
C1' N9 C4 N3 358.8 0.1
O4' C1' H1' C2' 241.9 244.5
O4' C1' H1' N9 118.1 122.2
H1' C1' C2' H2' 86.4 146.4
C2' C1' H1' N9 236.1 237.8
H1' C1' N9 C8 170.3 144.3
H1' C1' N9 C4 350.6 324.2
C8 N9 C1' H1' 170.3 144.3
C1' N9 C8 C4 180.3 180.0
C8 N9 C4 C5 359.2 359.8
C8 N9 C4 N3 179.1 180.1
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 CN7 172.0 179.9
N9 C8 N7 C5 359.9 0.3
C4 N9 C1' H1' 350.6 324.2
C1' N9 C4 C8 179.7 180.0
C4 N9 C8 N7 0.6 360.0
C4 N9 C8 H8 180.6 180.0
N7 C5 C4 N9 0.7 0.4
C6 C5 C4 N9 180.7 179.7
C5 C4 N9 N3 180.1 179.7
C2 N3 C4 N9 179.6 180.0
N7 C8 N9 C4 0.6 360.0
N9 C8 N7 H8 180.0 180.0
CN7 N7 C8 C5 172.1 179.7
C8 N7 CN7 HN71 180.0 90.0
C8 N7 CN7 HN72 305.3 210.1
C8 N7 CN7 HN73 54.8 330.1
C8 N7 C5 C6 179.6 180.4
C8 N7 C5 C4 359.6 359.6
H8 C8 N9 C4 180.6 180.0
N9 C8 H8 N7 180.0 180.0
H8 C8 N7 CN7 352.0 359.9
H8 C8 N7 C5 179.8 180.2
CN7 N7 C8 H8 352.0 359.9
C8 N7 CN7 C5 189.7 180.4
CN7 N7 C5 C6 7.5 0.7
CN7 N7 C5 C4 187.5 179.9
HN71 CN7 N7 HN72 234.7 240.0
HN71 CN7 N7 HN73 125.2 119.9
HN72 CN7 N7 HN73 250.5 240.0
N9 C4 C5 N7 0.7 0.4
C5 N7 C8 H8 179.8 180.2
C8 N7 C5 CN7 172.1 179.7
C5 N7 CN7 HN71 350.3 269.7
C5 N7 CN7 HN72 115.6 29.7
C5 N7 CN7 HN73 225.1 149.7
C6 C5 N7 C4 180.0 180.8
N7 C5 C6 O6 359.4 359.3
N7 C5 C6 N1 179.5 179.6
N7 C5 C4 N3 180.9 180.1
HN71 CN7 N7 C5 350.3 269.7
N7 CN7 HN71 HN72 125.3 120.1
N7 CN7 HN71 HN73 234.8 240.1
HN72 CN7 HN71 HN73 109.5 120.0
HN72 CN7 N7 C5 115.6 29.7
N7 CN7 HN72 HN71 222.1 240.0
N7 CN7 HN72 HN73 111.0 120.0
HN71 CN7 HN72 HN73 248.9 240.0
HN73 CN7 N7 C5 225.1 149.7
N7 CN7 HN73 HN71 137.9 119.9
N7 CN7 HN73 HN72 249.0 239.9
HN71 CN7 HN73 HN72 111.1 120.0
N9 C4 C5 C6 180.7 179.7
N7 C5 C6 C4 180.0 179.1
C6 C5 C4 N3 0.9 359.5
O6 C6 C5 N1 179.9 179.7
C5 C6 N1 C2 360.0 359.7
C5 C6 N1 H1 180.0 179.7
N9 C4 C5 N3 179.9 180.2
N7 C5 C4 C6 180.0 180.7
C4 C5 C6 O6 179.5 180.2
C4 C5 C6 N1 359.5 0.5
C2 N3 C4 C5 359.4 0.3
O6 C6 C5 C4 179.5 180.2
C5 C6 O6 N1 180.1 180.3
O6 C6 N1 C2 180.0 180.0
O6 C6 N1 H1 0.1 0.0
N1 C6 C5 C4 359.5 0.5
C5 C6 N1 O6 179.9 179.7
C2 N1 C6 H1 180.0 180.0
C6 N1 C2 N2 180.3 180.0
C6 N1 C2 N3 0.3 0.1
C6 N1 C2 H1 180.0 180.0
N2 C2 N1 N3 180.0 179.9
N1 C2 N2 H21 180.0 180.0
N1 C2 N2 H22 54.8 0.1
N1 C2 N3 C4 0.0 359.9
C6 N1 H1 C2 180.0 180.0
H1 N1 C2 N2 0.3 360.0
H1 N1 C2 N3 180.3 180.1
N2 C2 N1 H1 0.3 360.0
N1 C2 N2 N3 180.0 180.1
N2 C2 N3 C4 180.0 180.0
H21 N2 C2 H22 125.2 179.9
N9 C4 N3 C2 179.6 180.0
C5 C4 N3 C2 359.4 0.3
N3 C2 N1 H1 180.3 180.1
N1 C2 N3 N2 180.0 179.9
N3 C2 N2 H21 360.0 359.9
N3 C2 N2 H22 234.8 180.0
H21 N2 C2 N3 360.0 359.9
C2 N2 H21 H22 234.8 180.1
H22 N2 C2 N3 234.8 180.0
C2 N2 H22 H21 128.0 179.9
N9 C4 N3 C5 180.2 179.7