PDB Chemical Component G7M

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for G7M

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
OP3 P 1.531 1.610
OP3 HOP3 0.950 0.968
P OP1 1.483 1.480
P OP2 1.480 1.610
P O5' 1.601 1.610
OP2 HOP2 0.950 0.968
O5' C5' 1.444 1.429
C5' C4' 1.526 1.529
C5' H5' 1.100 1.090
C5' H5'' 1.100 1.091
C4' O4' 1.454 1.438
C4' C3' 1.518 1.542
C4' H4' 1.100 1.089
O4' C1' 1.424 1.444
C3' O3' 1.422 1.429
C3' C2' 1.520 1.548
C3' H3' 1.100 1.090
O3' HO3' 0.950 0.967
C2' O2' 1.416 1.429
C2' C1' 1.534 1.550
C2' H2' 1.101 1.090
O2' HO2' 0.950 0.967
C1' N9 1.480 1.465
C1' H1' 1.100 1.090
N9 C8 1.382 1.365
N9 C4 1.376 1.369
C8 N7 1.310 1.301
C8 H8 1.080 1.081
N7 CN7 1.483 1.465
N7 C5 1.389 1.355
CN7 HN71 1.100 1.090
CN7 HN72 1.100 1.090
CN7 HN73 1.100 1.089
C5 C6 1.422 1.415
C5 C4 1.373 1.400
C6 O6 1.230 1.219
C6 N1 1.400 1.352
N1 C2 1.389 1.364
N1 H1 0.999 0.970
C2 N2 1.329 1.372
C2 N3 1.316 1.314
N2 H21 1.000 0.970
N2 H22 1.000 0.970
N3 C4 1.358 1.338

Bond Angles for G7M

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
P OP3 HOP3 109.5 114.0
OP3 P OP1 109.6 109.5
OP3 P OP2 113.4 109.5
OP3 P O5' 102.9 109.5
OP1 P OP2 117.4 109.4
OP1 P O5' 103.2 109.4
OP2 P O5' 108.7 109.5
P OP2 HOP2 109.5 114.0
P O5' C5' 118.5 123.1
O5' C5' C4' 108.8 109.5
O5' C5' H5' 109.7 109.4
O5' C5' H5'' 109.7 109.5
C4' C5' H5' 109.6 109.5
C4' C5' H5'' 109.6 109.5
C5' C4' O4' 107.4 109.9
C5' C4' C3' 115.6 109.9
C5' C4' H4' 109.2 109.9
H5' C5' H5'' 109.5 109.4
O4' C4' C3' 104.9 107.3
O4' C4' H4' 110.2 109.9
C4' O4' C1' 109.8 107.0
C3' C4' H4' 109.4 110.0
C4' C3' O3' 111.7 110.4
C4' C3' C2' 102.1 104.2
C4' C3' H3' 108.9 110.5
O4' C1' C2' 106.7 103.5
O4' C1' N9 106.6 110.7
O4' C1' H1' 110.0 110.7
O3' C3' C2' 114.5 110.5
O3' C3' H3' 110.3 110.5
C3' O3' HO3' 109.5 113.9
C2' C3' H3' 108.9 110.6
C3' C2' O2' 111.4 110.9
C3' C2' C1' 102.1 102.1
C3' C2' H2' 109.1 110.9
O2' C2' C1' 114.4 110.9
O2' C2' H2' 110.6 110.8
C2' O2' HO2' 109.5 114.0
C1' C2' H2' 108.9 111.0
C2' C1' N9 115.7 110.6
C2' C1' H1' 108.5 110.6
N9 C1' H1' 109.2 110.7
C1' N9 C8 128.9 126.3
C1' N9 C4 126.0 126.3
C8 N9 C4 105.0 107.5
N9 C8 N7 113.9 109.8
N9 C8 H8 123.0 125.1
N9 C4 C5 106.5 106.1
N9 C4 N3 124.6 134.2
N7 C8 H8 123.0 125.1
C8 N7 CN7 127.8 125.3
C8 N7 C5 103.7 109.3
CN7 N7 C5 127.9 125.4
N7 CN7 HN71 109.5 109.4
N7 CN7 HN72 109.5 109.5
N7 CN7 HN73 109.5 109.5
N7 C5 C6 129.9 134.1
N7 C5 C4 110.8 107.3
HN71 CN7 HN72 109.5 109.5
HN71 CN7 HN73 109.4 109.5
HN72 CN7 HN73 109.5 109.5
C6 C5 C4 119.3 118.6
C5 C6 O6 129.0 120.9
C5 C6 N1 111.1 118.4
C5 C4 N3 128.9 119.7
O6 C6 N1 119.9 120.8
C6 N1 C2 125.0 120.3
C6 N1 H1 117.5 119.9
C2 N1 H1 117.5 119.8
N1 C2 N2 115.1 119.0
N1 C2 N3 123.9 121.9
N2 C2 N3 121.0 119.1
C2 N2 H21 120.0 120.1
C2 N2 H22 120.0 120.0
C2 N3 C4 111.9 121.2
H21 N2 H22 120.0 119.9

Torsion Angles for G7M

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP3 OP2 226.5 240.0
OP1 P OP3 O5' 109.3 120.0
OP2 P OP3 O5' 242.8 240.0
OP3 P OP2 HOP2 230.4 60.0
OP3 P O5' C5' 301.9 175.0
HOP3 OP3 P OP1 360.0 299.9
HOP3 OP3 P OP2 133.4 59.9
HOP3 OP3 P O5' 250.6 180.0
OP1 P OP3 HOP3 360.0 299.9
OP3 P OP1 OP2 131.4 120.0
OP3 P OP1 O5' 250.9 240.0
OP2 P OP1 O5' 119.6 120.0
OP1 P OP2 HOP2 0.0 180.1
OP1 P O5' C5' 187.8 55.0
OP2 P OP3 HOP3 133.4 59.9
OP3 P OP2 OP1 230.4 240.0
OP3 P OP2 O5' 113.8 120.0
OP1 P OP2 O5' 243.4 240.1
OP2 P O5' C5' 62.4 295.0
O5' P OP3 HOP3 250.6 180.0
OP3 P O5' OP1 114.1 120.0
OP3 P O5' OP2 239.5 240.0
OP1 P O5' OP2 125.4 120.0
O5' P OP2 HOP2 116.6 300.0
P O5' C5' C4' 188.5 180.0
P O5' C5' H5' 308.4 300.0
P O5' C5' H5'' 68.6 59.9
HOP2 OP2 P O5' 116.6 300.0
C4' C5' O5' H5' 240.1 239.9
C4' C5' O5' H5'' 119.9 120.0
O5' C5' C4' O4' 305.4 66.5
O5' C5' C4' C3' 62.1 184.3
O5' C5' C4' H4' 185.9 305.4
H5' C5' O5' H5'' 239.8 240.1
O5' C5' C4' H5' 119.9 120.0
O5' C5' C4' H5'' 240.1 240.0
H5' C5' C4' H5'' 120.2 120.0
O4' C4' C5' C3' 243.3 242.2
O4' C4' C5' H4' 119.5 121.0
C5' C4' O4' C1' 142.4 145.9
C3' C4' C5' H4' 236.2 238.8
C5' C4' C3' O3' 84.3 119.9
C5' C4' C3' C2' 207.1 238.6
C5' C4' C3' H3' 322.2 357.4
O5' C5' H5' C4' 240.6 239.9
O5' C5' H5' H5'' 120.3 119.9
C4' C5' H5' H5'' 239.7 240.0
H5' C5' C4' O4' 185.5 306.4
H5' C5' C4' C3' 302.2 64.2
H5' C5' C4' H4' 66.0 185.4
O5' C5' H5'' C4' 119.4 120.0
O5' C5' H5'' H5' 239.7 240.1
C4' C5' H5'' H5' 120.3 120.0
H5'' C5' C4' O4' 65.3 186.5
H5'' C5' C4' C3' 182.0 304.3
H5'' C5' C4' H4' 305.8 65.4
O4' C4' C5' H5' 185.5 306.4
O4' C4' C5' H5'' 65.3 186.5
C5' C4' O4' C3' 123.5 119.4
C5' C4' O4' H4' 241.1 238.9
C3' C4' O4' H4' 117.6 119.6
O4' C4' C3' O3' 202.4 239.3
O4' C4' C3' C2' 325.2 358.0
O4' C4' C3' H3' 80.3 116.8
C4' O4' C1' C2' 4.9 319.9
C4' O4' C1' N9 240.7 201.5
C4' O4' C1' H1' 122.4 78.4
C3' C4' C5' H5' 302.2 64.2
C3' C4' C5' H5'' 182.0 304.3
C5' C4' C3' O4' 241.9 240.6
C5' C4' C3' H4' 123.7 121.1
O4' C4' C3' H4' 241.8 240.5
C3' C4' O4' C1' 18.9 26.5
O3' C3' C4' C2' 237.1 241.3
O3' C3' C4' H3' 122.0 122.5
C4' C3' O3' HO3' 180.0 180.0
C2' C3' C4' H3' 244.9 241.2
C4' C3' C2' O2' 274.2 220.9
C4' C3' C2' C1' 36.7 339.1
C4' C3' C2' H2' 151.8 97.4
H4' C4' C5' H5' 66.0 185.4
H4' C4' C5' H5'' 305.8 65.4
C5' C4' H4' O4' 117.8 121.0
C5' C4' H4' C3' 232.6 238.9
O4' C4' H4' C3' 114.8 117.9
H4' C4' O4' C1' 261.3 267.0
H4' C4' C3' O3' 320.5 358.8
H4' C4' C3' C2' 83.4 117.5
H4' C4' C3' H3' 198.5 236.3
C1' O4' C4' C3' 18.9 26.5
C1' O4' C4' H4' 261.3 267.0
C3' C2' C1' O4' 333.6 37.0
O2' C2' C1' O4' 94.0 155.2
O4' C1' C2' H2' 218.3 278.8
C2' C1' O4' N9 124.2 118.5
C2' C1' O4' H1' 242.5 241.5
N9 C1' O4' H1' 118.3 123.1
O4' C1' N9 C8 46.4 23.5
O4' C1' N9 C4 226.8 203.3
O3' C3' C4' H4' 320.5 358.8
C4' C3' O3' C2' 115.5 114.8
C4' C3' O3' H3' 238.7 237.5
C2' C3' O3' H3' 123.3 122.7
O3' C3' C2' O2' 35.1 339.6
O3' C3' C2' C1' 157.6 97.8
O3' C3' C2' H2' 272.7 216.0
C2' C3' C4' H4' 83.4 117.5
C4' C3' C2' O3' 239.1 241.4
C4' C3' C2' H3' 115.1 118.7
O4' C1' C2' C3' 333.6 37.0
O3' C3' C2' H3' 236.0 237.3
C2' C3' O3' HO3' 64.5 65.2
O2' C2' C3' C1' 237.5 241.8
O2' C2' C3' H2' 122.4 123.6
C3' C2' O2' HO2' 180.0 298.5
C1' C2' C3' H2' 244.9 241.7
C3' C2' C1' N9 91.9 155.6
C3' C2' C1' H1' 215.1 278.5
H3' C3' C4' H4' 198.5 236.3
C4' C3' H3' O3' 122.9 122.5
C4' C3' H3' C2' 249.4 245.2
O3' C3' H3' C2' 126.5 122.7
H3' C3' O3' HO3' 301.3 302.5
H3' C3' C2' O2' 159.1 102.3
H3' C3' C2' C1' 281.6 220.4
H3' C3' C2' H2' 36.7 338.7
HO3' O3' C3' C2' 64.5 65.2
HO3' O3' C3' H3' 301.3 302.5
O4' C1' C2' O2' 94.0 155.2
O2' C2' C3' H3' 159.1 102.3
C3' C2' O2' C1' 115.1 112.7
C3' C2' O2' H2' 238.5 236.4
C1' C2' O2' H2' 123.4 123.7
O2' C2' C1' N9 212.3 273.7
O2' C2' C1' H1' 335.5 36.7
O4' C1' C2' N9 241.6 241.5
O4' C1' C2' H1' 118.5 118.5
C1' C2' C3' H3' 281.6 220.4
C3' C2' C1' O2' 239.6 241.9
C3' C2' C1' H2' 115.3 118.2
O2' C2' C1' H2' 235.7 236.3
C1' C2' O2' HO2' 64.9 185.8
N9 C1' C2' H1' 236.9 237.0
C2' C1' N9 C8 288.0 269.5
C2' C1' N9 C4 108.4 89.2
H2' C2' C3' H3' 36.7 338.7
C3' C2' H2' O2' 122.8 123.6
C3' C2' H2' C1' 249.4 247.3
O2' C2' H2' C1' 126.5 123.7
H2' C2' O2' HO2' 301.5 62.1
H2' C2' C1' N9 336.6 37.4
H2' C2' C1' H1' 99.8 160.3
HO2' O2' C2' C1' 64.9 185.8
HO2' O2' C2' H2' 301.5 62.1
O4' C1' N9 C2' 118.4 114.1
O4' C1' N9 H1' 241.2 237.0
N9 C1' C2' H2' 336.6 37.4
C2' C1' N9 H1' 122.8 122.9
C8 N9 C1' C4 179.7 180.2
C1' N9 C8 N7 180.9 180.0
C1' N9 C8 H8 0.9 360.0
C1' N9 C4 C5 178.9 179.8
C1' N9 C4 N3 358.8 0.6
O4' C1' H1' C2' 243.6 245.9
O4' C1' H1' N9 116.6 123.0
H1' C1' C2' H2' 99.8 160.3
C2' C1' H1' N9 233.0 237.1
H1' C1' N9 C8 165.2 146.6
H1' C1' N9 C4 345.6 326.4
C8 N9 C1' H1' 165.2 146.6
C1' N9 C8 C4 180.3 179.8
C8 N9 C4 C5 359.2 359.6
C8 N9 C4 N3 179.1 180.4
N7 C8 N9 H8 180.0 180.1
N9 C8 N7 CN7 172.0 180.0
N9 C8 N7 C5 359.9 360.0
C4 N9 C1' H1' 345.6 326.4
C1' N9 C4 C8 179.7 180.2
C4 N9 C8 N7 0.6 0.2
C4 N9 C8 H8 180.6 180.2
N7 C5 C4 N9 0.7 0.4
C6 C5 C4 N9 180.7 180.1
C5 C4 N9 N3 180.1 179.3
C2 N3 C4 N9 179.6 179.7
N7 C8 N9 C4 0.6 0.2
N9 C8 N7 H8 180.0 179.9
CN7 N7 C8 C5 172.1 180.0
C8 N7 CN7 HN71 180.0 90.0
C8 N7 CN7 HN72 300.0 209.9
C8 N7 CN7 HN73 60.0 330.0
C8 N7 C5 C6 179.6 180.1
C8 N7 C5 C4 359.6 359.8
H8 C8 N9 C4 180.6 180.2
N9 C8 H8 N7 180.0 180.1
H8 C8 N7 CN7 352.0 0.1
H8 C8 N7 C5 179.9 180.1
CN7 N7 C8 H8 352.0 0.1
C8 N7 CN7 C5 189.7 180.0
CN7 N7 C5 C6 7.5 0.1
CN7 N7 C5 C4 187.5 179.8
HN71 CN7 N7 HN72 240.0 240.0
HN71 CN7 N7 HN73 119.9 120.0
HN72 CN7 N7 HN73 240.0 240.0
N9 C4 C5 N7 0.7 0.4
C5 N7 C8 H8 179.9 180.1
C8 N7 C5 CN7 172.1 180.0
C5 N7 CN7 HN71 350.3 270.0
C5 N7 CN7 HN72 110.3 30.0
C5 N7 CN7 HN73 230.3 150.0
C6 C5 N7 C4 180.0 180.3
N7 C5 C6 O6 359.4 359.9
N7 C5 C6 N1 179.5 179.9
N7 C5 C4 N3 180.9 179.7
HN71 CN7 N7 C5 350.3 270.0
N7 CN7 HN71 HN72 120.0 120.0
N7 CN7 HN71 HN73 240.0 240.0
HN72 CN7 HN71 HN73 120.0 120.0
HN72 CN7 N7 C5 110.3 30.0
N7 CN7 HN72 HN71 240.0 240.1
N7 CN7 HN72 HN73 120.0 120.0
HN71 CN7 HN72 HN73 240.0 240.0
HN73 CN7 N7 C5 230.3 150.0
N7 CN7 HN73 HN71 120.0 120.0
N7 CN7 HN73 HN72 240.0 240.0
HN71 CN7 HN73 HN72 120.0 120.0
N9 C4 C5 C6 180.7 180.1
N7 C5 C6 C4 180.0 179.7
C6 C5 C4 N3 0.9 359.5
O6 C6 C5 N1 179.9 180.0
C5 C6 N1 C2 360.0 0.0
C5 C6 N1 H1 179.9 179.9
N9 C4 C5 N3 179.9 180.6
N7 C5 C4 C6 180.0 180.2
C4 C5 C6 O6 179.5 180.3
C4 C5 C6 N1 359.5 0.3
C2 N3 C4 C5 359.4 0.5
O6 C6 C5 C4 179.5 180.3
C5 C6 O6 N1 180.1 180.0
O6 C6 N1 C2 180.0 180.0
O6 C6 N1 H1 0.0 359.9
N1 C6 C5 C4 359.5 0.3
C5 C6 N1 O6 179.9 180.0
C2 N1 C6 H1 180.0 180.1
C6 N1 C2 N2 180.3 180.0
C6 N1 C2 N3 0.3 359.9
C6 N1 C2 H1 180.0 179.9
N2 C2 N1 N3 180.0 180.1
N1 C2 N2 H21 180.0 359.9
N1 C2 N2 H22 360.0 180.0
N1 C2 N3 C4 0.0 359.8
C6 N1 H1 C2 180.0 180.1
H1 N1 C2 N2 0.3 0.1
H1 N1 C2 N3 180.3 180.0
N2 C2 N1 H1 0.3 0.1
N1 C2 N2 N3 180.0 179.9
N2 C2 N3 C4 180.0 179.7
H21 N2 C2 H22 180.0 180.0
N9 C4 N3 C2 179.6 179.7
C5 C4 N3 C2 359.4 0.5
N3 C2 N1 H1 180.3 180.0
N1 C2 N3 N2 180.0 180.1
N3 C2 N2 H21 0.0 180.0
N3 C2 N2 H22 180.0 0.1
H21 N2 C2 N3 0.0 180.0
C2 N2 H21 H22 180.0 180.0
H22 N2 C2 N3 180.0 0.1
C2 N2 H22 H21 180.0 180.0
N9 C4 N3 C5 180.2 179.2