Atom Nomenclature for G6Y

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for G6Y

Atom Name (V3) Atom Name (V2)
C4 C1
C5 C2
C6 C3
N1 N1
N3 N2
CBE C4
CBD C5
C2 C6
NAG N3
NAH N4
CAI C7
CAJ C8
CAK C9
CBC C10
CAL C11
CAM C12
CAQ C13
CAP C14
OAX O1
CAY C15
CAO C16
CAN C17
CAR C18
CAS C19
CAT C20
CAU C21
CAZ C22
OBB O2
OBA O3
CAV C23
CAW C24
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24